NO25G00160.1, NO25G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00160.1
Unique NameNO25G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1945
Alignment locationchr25:29791..34132 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:29791..34132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO25G00160.1 vs.
Match: XP_012195879.1 (hypothetical protein SPRG_01924 [Saprolegnia parasitica CBS 223.65]; KDO33112.1 hypothetical protein SPRG_01924 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 105.9 bits (263), Expect = 3.500e-19
Identity = 77/243 (31.69%), Postives = 117/243 (48.15%), Query Frame = 0
Query:   15 GHLPLLQSWASEY------SEQGLIIPYAGSIRAAILLDLPPSLPPSLPPSFSPSLERVHLLTSGARGALPNMDLLHLASTLLPAKR--VEMDWNPSSRFPFQGKG-------------REGGREGGRDAYFDRLRKMSGFGLSLALGPNGGHACFLRHGIDALTIKAEPTSDEDNQGGRRGMDLLLLFQGLEKILRSLNNLEARLYHGFFLYLMPSRDHFVSLSEYIYAMVLLLLPFLPRFL 237
            GH P +++W   Y      +    +  +AG IRAAI L+             +     V +L +G  G LPN+DL++ A   L ++R  V MD    +R    G               R+ G      +YFD L  +  F  +LA+GP+G HA F+RH IDA+T+ A   S     G    + LL   + +E  +R+++N+E +L+  F+ YL+ S   FVS+ EY Y +VL+LLP     L
Sbjct:  222 GHSPAVEAWLDAYHNDPFATSNAALDMHAGVIRAAINLETSGD---------AHRHNTVAVLGAGVNGQLPNLDLINSAVEALESERIPVAMDRCADARLDCDGDALSSTLRAVRRFVVRQLGASSALSSYFDGLYHLLRFIQTLAMGPSGPHANFIRHNIDAITLSAVQAS-----GATTPLSLLGWLRSIETTVRAMSNVEEKLHQSFYYYLLVSPRLFVSIGEYYYVLVLVLLPLFAHVL 450          
The following BLAST results are available for this feature:
BLAST of NO25G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_012195879.13.500e-1931.69hypothetical protein SPRG_01924 [Saprolegnia paras... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00160NO25G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00160.1NO25G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00160.1.cds1NO25G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds2NO25G00160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds3NO25G00160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds4NO25G00160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds5NO25G00160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds6NO25G00160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds7NO25G00160.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds8NO25G00160.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds9NO25G00160.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds10NO25G00160.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00160.1.cds11NO25G00160.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
ATGTTCATTCCTGCTATTCGACGGGAAGAAGAGAAGGCCTGGGGCCATCT
CCCTCTCCTCCAGTCATGGGCCTCTGAGTATTCGGAACAAGGCCTTATCA
TTCCCTACGCCGGCAGCATCCGCGCCGCTATCCTCCTCGACCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCACCCTCCCTCGAGAGGGT
GCACCTGCTGACATCAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTAC
TGCATTTAGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGG
AACCCCTCGTCCCGCTTCCCTTTCCAGGGAAAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGACGCCTACTTCGATCGACTGAGGAAAATGAGCGGGT
TTGGACTGTCTCTGGCCCTCGGGCCCAATGGAGGACATGCGTGCTTCCTG
AGACACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGA
GGACAATCAAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAG
GTCTTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTAT
CACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCT
CTCAGAGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCC
GATTTCTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTC
TTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTT
CCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTC
GCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCG
ACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTC
GTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTT
CATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGC
ATTTGGATCATGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCT
CGCCGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCT
CCCCTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCT
TCGCGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCT
CTACTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCC
TCAACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTC
ATTTTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCG
GGAGGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAAACGAAAACAT
GTCAAAAGAATCATGAAGTACATAAATTAATACGGACTTTGGCAGAGAAT
AAATGAAAAAGAAGAATCAAGAAATGAGACGTCATTACAGACCCTGTTTA
TGTCGTGAGGAAGGTCAATGGCGTCATGTAAGCTGCTGTGAAATGCGTCC
GTTATTAATTTCAAAAATAAATAAAAATTCCTTCCTTCCCCCCTCTTACG
TGCTCTCTCACACAAATACGTTCGTTTCATCTTTCTTTGTGTGTGTGCGT
GCTACTCTCACCATCTGCTTCGAACAGTCAGGGAAAGGGCGAGAGGAAGG
GAGGGAAGGGCACGCCTACTTTCTTTTCGTTGGCGGCTTTGTCGGAAGAG
CAGAGGGGACAGGAGAGTAGTAGAGGAGAAAGAGGAGGGAGAGATGGCAT
GCCTGGAGGAGGAGGGAAGAGACGAAAGTGGAAGGAAAGACGTTGAAAGC
CACCTCTATCCCCAGCAGGAGGAGGAGCCGGGGGAGGGAGGGAGG
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protein sequence of NO25G00160.1

>NO25G00160.1-protein ID=NO25G00160.1-protein|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MFIPAIRREEEKAWGHLPLLQSWASEYSEQGLIIPYAGSIRAAILLDLPP
SLPPSLPPSFSPSLERVHLLTSGARGALPNMDLLHLASTLLPAKRVEMDW
NPSSRFPFQGKGREGGREGGRDAYFDRLRKMSGFGLSLALGPNGGHACFL
RHGIDALTIKAEPTSDEDNQGGRRGMDLLLLFQGLEKILRSLNNLEARLY
HGFFLYLMPSRDHFVSLSEYIYAMVLLLLPFLPRFLTFSVRAGYTSLPFV
FSSFLLLLCWSGGLYSFLLFEGGREEGKEERSSRSCLLIPSILLLFFFSA
TLSLRLFLSLFPTSSSSSSSPSSSSSSSSSSFSSSSSSSSRRAGLGALLC
IWIMYSQLALTFLNYSLAVLLSLPLLLFTFLLPSPSFPSSSPSPSPSSSS
SRVLRQRLAIVFLLLLLYFLPFFLPPALPRLLLLNHLLYFDVHVPWFCFV
IFPCLALLTVLAWAGGREGGTEGRREDQQ*
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mRNA from alignment at chr25:29791..34132+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4342bp|location=Sequence derived from alignment at chr25:29791..34132+ (Nannochloropsis oceanica)
ATGTTCATTCCTGCTATTCGACGTATGTGGAGCCAAAATCCCTGCGCTTC TCCTGAATAGCAGAAATGAAATTCTTCATCTCTATCCGTTTCCTCCCTCC CTGCTCCCCCGACGCCGCCAGCTCGCACTCGCTGACATTCCATGTTCGTA CGAGGCTGTACACCCTCATCCCACCAGGGGAAGAAGCGAAGGCCATGGGC CACCTTTCTCATACAGAGAGTACGACAAACACACATTTACTGACACACAC ATATATACACAGAGTACAAGAAACACACATTCACTAACGCACACACATAT ATACACAGAGTACAACAAACACACATTCACTAACGCACACACATATACAC ACACACCCTCATCCCAACAGGGGAAGAAGAGAAGGCCTGGGGCCATCTCC CTCTCCTCCAGGTGCGTGGACACCCGCCCCTCATTCACTCCCTCCCTCTC CCCCTCCCTCCCTTCCTCCTCCTTCCCATTCGCTTTTCATCATCCCCTTC CTCCCTTCCTTTCTCCCTCCATCCTTCCCTCCATAGTCATGGGCCTCTGA GTATTCGGAACAAGGCCTTATCATTCCCTACGCCGGCAGCATCCGCGCCG CTATCCTCCTCGACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC TTCTCACCCTCCCTCGAGAGGGTGCACCTGCTGACATCAGGTACGCGAGG AAGGGAGGGAGGGAAGGGAGGGAGGGAAGGGAAGGAGGGTAGGGAAGGAG GGAAGGGAAGGAGGGAAGGGAAGGATTAAAGGGAAGGATTAAAGAGAAGG ATTAAAGGGAAGGATCCAACAGGGAGGCTTCCTAGCTTCGACCTTCTATC CCTTGTCCTCCCCCCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTACTGCATTT AGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGGTAGGCAA GGAGGGAGGGAGGGAGGGAGGGAGGGTGAAAGTGCCTTCCGCATCACGAG CATTCTTCTGCTCCGTCAAGAAGAGAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGGAAAGACACTCGGACTGGTTTTCATTTTCATTC TCTTTCCTTTCTTTTTACTCGCAGGAACCCCTCGTCCCGCTTCCCTTTCC AGGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGCCTACTTC GATCGACTGAGGAAAATGAGCGGGTTTGGACTGTCTCTGGCCCTCGGGCC CAATGGAGGACATGCGTGCTTCCTGAGGTAAGGGAGGGAGGGAGGGAGGG AGGGAGGGAGGGAGGGAGGGAGGGAGGGCGAGTAGGTTGTGTTGTGTTCA TCGGCATTTTTCTCATCTTGTGTGTTGTAATTGATCGAACCTTAACCTCC TCTTGTGTTCTAATGTTGTCAGCTTATGTCCTTAACCTCGTTTTATGTTC TAATGTTGTCATCTTATGTGTTGTAATTGATCGAACCTTTCCTTGACAGA CACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGAGGA CAATCAAGGTAACCCCTCCATCCCTCCCTCCGTTCCTCTCTCCATCCCTC CGTCTTATTATCCTCTTTCTTACCCTCCCTCCGTCCCTCCCTCCGTCCCT CCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCGTC CCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCC TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCGTC TCTAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAGGTCTTG AGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTATCACGTA CGTGCTCTCCCTCCCTTCCTCCCTCCTCCCCTCCCTCTTTCCCTTTTTTC AATCCTCTTGGCTCATCTGACCCGCCCTCTCTCCCTCCTTTGTTCCTTTG TTGAACCCTCCCTCCCTCCCTACCTCCCTCCAGGGCTTTTTTTTGTACCT GATGCCGTCCCGCGATCACTTTGTGTCCCTCTCAGAGTACATCTATGCCA TGGTGAGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGGGAGGGGAGGGAAG AGAATGAACAAAGAAAAATATAAATGCTCATACTTTTACTCGCCCTCTGT AGGTGCTGCTCCTCCTTCCCTTTCTGCCCCGATTTCTCACCTTCTCCGTG CGGGCGGTAAGGAAGAAATAATAGTAAATAAAATAATACTAATAAATTAA ATAACAAGAAGAAATGAAATAAACCTAATTAATAGAATAATAACAATAAA TAGAAAGGGAGGGAAAGGCCGAATGCCACCGACTGGAATTATTCGTACCT ACGCTTCTATCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTA GGGCTACACCTCCCTCCCTTTCGTCTTCTCGTCCTTTCTCCTCCTCCTCT GCTGGAGCGGCGGGCTCTACTCCTTCCTCCTCTTCGAAGGCGGGAGGGAA GAAGGGAAGGAGGAACGGTCGAGTCGCTCCTGCCTCTTAATTCCCTCCAT CCTCCTCCTCTTCTTCTTCTCTGCGACTTTATCCCTTCGCCTCTTCCTCT CCCTGTTCCCCACCTCTTCTTCGTCGTCCTCCTCCCCCTCCTCGTCCTCC TCCTCCTCGTCCTCCTCCTTCTCTTCATCCTCCTCCTCTTCCTCCAGGAG AGCAGGCTTGGGCGCCTTGCTGTGCATTTGGATCATGTGAGGAGGGAGGG AGAGATGGAGGAAGGGAGGGAGTGAGGGAGGGAGAGAAGGAGGGAGGGAG GGATGGATGGTTTTGAAGAAGTGCTTTATTCTAAGGTACGGATAGGAGGG AGGAAAGGAGGGGGGGAAGGGGGGAGGGGTAGTCACAAATGCACTCGAGC TGCGGCGGGACTGGAGGAAAAGTTCCTTTCCTTTCTCTTCTGTACAAGAA GGGAAGGAGAAACGGCTCTCCCTCCGTTAGACTCAACCGTTGACAACGTG TGCTAGAGGAAGAAGGGGGGACGGGAGGGAGGGGAGGAGGGAGGGCAGGG AGCCTCTTCATGAGCCCTTCGTGCCGTCCCTTTGCCCCTTGCTCGCTTAC CGTTTTCCTGAAGGTGATAAAGCCACGTGTGTACGGACGCGCTTTTTAAA ATTTAACGGTTGGCGCGTTTCGAAGAAGGCTCACCACATCATTTTAACAT GTATGTATGTAAATAAATTCATTCATTCATTCTAATATATATTATGAATA AATTTATTCATTCATATATGTGAATAAATTCATTTATATATTGACTTAAA TATATATACACTTATATATATACAATGAATATATCTCGCTCCCTCCCTCT CATCACAGGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCTCGC CGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCTCCC CTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCTTCG CGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCTCTA CTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCCTCA ACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTCATT TTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCGGGA GGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAAACGAAAACATGTC AAAAGAATCATGAAGTACATAAATTAATACGGACTTTGGCAGAGAATAAA TGAAAAAGAAGAATCAAGAAATGAGACGTCATTACAGACCCTGTTTATGT CGTGAGGAAGGTCAATGGCGTCATGTAAGCTGCTGTGAAATGCGTCCGTT ATTAATTTCAAAAATAAATAAAAATTCCTTCCTTCCCCCCTCTTACGTGC TCTCTCACACAAATACGTTCGTTTCATCTTTCTTTGTGTGTGTGCGTGCT ACTCTCACCATCTGCTTCGAACAGTCAGGGAAAGGGCGAGAGGAAGGGAG GGAAGGGCACGCCTACTTTCTTTTCGTTGGCGGCTTTGTCGGAAGAGCAG AGGGGACAGGAGAGTAGTAGAGGAGAAAGAGGAGGGAGAGATGGCATGCC TGGAGGAGGAGGGAAGAGACGAAAGTGGAAGGAAAGACGTTGAAAGCCAC CTCTATCCCCAGCAGGAGGAGGAGCCGGGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr25:29791..34132+

>NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr25:29791..34132+ (Nannochloropsis oceanica)
ATGTTCATTCCTGCTATTCGACGGGAAGAAGAGAAGGCCTGGGGCCATCT
CCCTCTCCTCCAGTCATGGGCCTCTGAGTATTCGGAACAAGGCCTTATCA
TTCCCTACGCCGGCAGCATCCGCGCCGCTATCCTCCTCGACCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCACCCTCCCTCGAGAGGGT
GCACCTGCTGACATCAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTAC
TGCATTTAGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGG
AACCCCTCGTCCCGCTTCCCTTTCCAGGGAAAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGACGCCTACTTCGATCGACTGAGGAAAATGAGCGGGT
TTGGACTGTCTCTGGCCCTCGGGCCCAATGGAGGACATGCGTGCTTCCTG
AGACACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGA
GGACAATCAAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAG
GTCTTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTAT
CACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCT
CTCAGAGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCC
GATTTCTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTC
TTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTT
CCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTC
GCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCG
ACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTC
GTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTT
CATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGC
ATTTGGATCATGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCT
CGCCGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCT
CCCCTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCT
TCGCGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCT
CTACTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCC
TCAACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTC
ATTTTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCG
GGAGGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAA
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Synonyms
Publications