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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:29791..34132 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00160.1 vs.
Match: XP_012195879.1 (hypothetical protein SPRG_01924 [Saprolegnia parasitica CBS 223.65]; KDO33112.1 hypothetical protein SPRG_01924 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 105.9 bits (263), Expect = 3.500e-19 Identity = 77/243 (31.69%), Postives = 117/243 (48.15%), Query Frame = 0
Query: 15 GHLPLLQSWASEY------SEQGLIIPYAGSIRAAILLDLPPSLPPSLPPSFSPSLERVHLLTSGARGALPNMDLLHLASTLLPAKR--VEMDWNPSSRFPFQGKG-------------REGGREGGRDAYFDRLRKMSGFGLSLALGPNGGHACFLRHGIDALTIKAEPTSDEDNQGGRRGMDLLLLFQGLEKILRSLNNLEARLYHGFFLYLMPSRDHFVSLSEYIYAMVLLLLPFLPRFL 237
GH P +++W Y + + +AG IRAAI L+ + V +L +G G LPN+DL++ A L ++R V MD +R G R+ G +YFD L + F +LA+GP+G HA F+RH IDA+T+ A S G + LL + +E +R+++N+E +L+ F+ YL+ S FVS+ EY Y +VL+LLP L
Sbjct: 222 GHSPAVEAWLDAYHNDPFATSNAALDMHAGVIRAAINLETSGD---------AHRHNTVAVLGAGVNGQLPNLDLINSAVEALESERIPVAMDRCADARLDCDGDALSSTLRAVRRFVVRQLGASSALSSYFDGLYHLLRFIQTLAMGPSGPHANFIRHNIDAITLSAVQAS-----GATTPLSLLGWLRSIETTVRAMSNVEEKLHQSFYYYLLVSPRLFVSIGEYYYVLVLVLLPLFAHVL 450
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp ATGTTCATTCCTGCTATTCGACGGGAAGAAGAGAAGGCCTGGGGCCATCT CCCTCTCCTCCAGTCATGGGCCTCTGAGTATTCGGAACAAGGCCTTATCA TTCCCTACGCCGGCAGCATCCGCGCCGCTATCCTCCTCGACCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCACCCTCCCTCGAGAGGGT GCACCTGCTGACATCAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTAC TGCATTTAGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGG AACCCCTCGTCCCGCTTCCCTTTCCAGGGAAAAGGGAGGGAGGGAGGGAG GGAGGGAGGGAGGGACGCCTACTTCGATCGACTGAGGAAAATGAGCGGGT TTGGACTGTCTCTGGCCCTCGGGCCCAATGGAGGACATGCGTGCTTCCTG AGACACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGA GGACAATCAAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAG GTCTTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTAT CACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCT CTCAGAGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCC GATTTCTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTC TTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTT CCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTC GCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCG ACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTC GTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTT CATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGC ATTTGGATCATGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCT CGCCGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCT CCCCTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCT TCGCGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCT CTACTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCC TCAACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTC ATTTTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCG GGAGGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAAACGAAAACAT GTCAAAAGAATCATGAAGTACATAAATTAATACGGACTTTGGCAGAGAAT AAATGAAAAAGAAGAATCAAGAAATGAGACGTCATTACAGACCCTGTTTA TGTCGTGAGGAAGGTCAATGGCGTCATGTAAGCTGCTGTGAAATGCGTCC GTTATTAATTTCAAAAATAAATAAAAATTCCTTCCTTCCCCCCTCTTACG TGCTCTCTCACACAAATACGTTCGTTTCATCTTTCTTTGTGTGTGTGCGT GCTACTCTCACCATCTGCTTCGAACAGTCAGGGAAAGGGCGAGAGGAAGG GAGGGAAGGGCACGCCTACTTTCTTTTCGTTGGCGGCTTTGTCGGAAGAG CAGAGGGGACAGGAGAGTAGTAGAGGAGAAAGAGGAGGGAGAGATGGCAT GCCTGGAGGAGGAGGGAAGAGACGAAAGTGGAAGGAAAGACGTTGAAAGC CACCTCTATCCCCAGCAGGAGGAGGAGCCGGGGGAGGGAGGGAGG back to topprotein sequence of NO25G00160.1 >NO25G00160.1-protein ID=NO25G00160.1-protein|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp MFIPAIRREEEKAWGHLPLLQSWASEYSEQGLIIPYAGSIRAAILLDLPP SLPPSLPPSFSPSLERVHLLTSGARGALPNMDLLHLASTLLPAKRVEMDW NPSSRFPFQGKGREGGREGGRDAYFDRLRKMSGFGLSLALGPNGGHACFL RHGIDALTIKAEPTSDEDNQGGRRGMDLLLLFQGLEKILRSLNNLEARLY HGFFLYLMPSRDHFVSLSEYIYAMVLLLLPFLPRFLTFSVRAGYTSLPFV FSSFLLLLCWSGGLYSFLLFEGGREEGKEERSSRSCLLIPSILLLFFFSA TLSLRLFLSLFPTSSSSSSSPSSSSSSSSSSFSSSSSSSSRRAGLGALLC IWIMYSQLALTFLNYSLAVLLSLPLLLFTFLLPSPSFPSSSPSPSPSSSS SRVLRQRLAIVFLLLLLYFLPFFLPPALPRLLLLNHLLYFDVHVPWFCFV IFPCLALLTVLAWAGGREGGTEGRREDQQ* back to topmRNA from alignment at chr25:29791..34132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4342bp|location=Sequence derived from alignment at chr25:29791..34132+ (Nannochloropsis oceanica) ATGTTCATTCCTGCTATTCGACGTATGTGGAGCCAAAATCCCTGCGCTTC
TCCTGAATAGCAGAAATGAAATTCTTCATCTCTATCCGTTTCCTCCCTCC
CTGCTCCCCCGACGCCGCCAGCTCGCACTCGCTGACATTCCATGTTCGTA
CGAGGCTGTACACCCTCATCCCACCAGGGGAAGAAGCGAAGGCCATGGGC
CACCTTTCTCATACAGAGAGTACGACAAACACACATTTACTGACACACAC
ATATATACACAGAGTACAAGAAACACACATTCACTAACGCACACACATAT
ATACACAGAGTACAACAAACACACATTCACTAACGCACACACATATACAC
ACACACCCTCATCCCAACAGGGGAAGAAGAGAAGGCCTGGGGCCATCTCC
CTCTCCTCCAGGTGCGTGGACACCCGCCCCTCATTCACTCCCTCCCTCTC
CCCCTCCCTCCCTTCCTCCTCCTTCCCATTCGCTTTTCATCATCCCCTTC
CTCCCTTCCTTTCTCCCTCCATCCTTCCCTCCATAGTCATGGGCCTCTGA
GTATTCGGAACAAGGCCTTATCATTCCCTACGCCGGCAGCATCCGCGCCG
CTATCCTCCTCGACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCTCACCCTCCCTCGAGAGGGTGCACCTGCTGACATCAGGTACGCGAGG
AAGGGAGGGAGGGAAGGGAGGGAGGGAAGGGAAGGAGGGTAGGGAAGGAG
GGAAGGGAAGGAGGGAAGGGAAGGATTAAAGGGAAGGATTAAAGAGAAGG
ATTAAAGGGAAGGATCCAACAGGGAGGCTTCCTAGCTTCGACCTTCTATC
CCTTGTCCTCCCCCCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTACTGCATTT
AGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGGTAGGCAA
GGAGGGAGGGAGGGAGGGAGGGAGGGTGAAAGTGCCTTCCGCATCACGAG
CATTCTTCTGCTCCGTCAAGAAGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGAAAGACACTCGGACTGGTTTTCATTTTCATTC
TCTTTCCTTTCTTTTTACTCGCAGGAACCCCTCGTCCCGCTTCCCTTTCC
AGGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGCCTACTTC
GATCGACTGAGGAAAATGAGCGGGTTTGGACTGTCTCTGGCCCTCGGGCC
CAATGGAGGACATGCGTGCTTCCTGAGGTAAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGCGAGTAGGTTGTGTTGTGTTCA
TCGGCATTTTTCTCATCTTGTGTGTTGTAATTGATCGAACCTTAACCTCC
TCTTGTGTTCTAATGTTGTCAGCTTATGTCCTTAACCTCGTTTTATGTTC
TAATGTTGTCATCTTATGTGTTGTAATTGATCGAACCTTTCCTTGACAGA
CACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGAGGA
CAATCAAGGTAACCCCTCCATCCCTCCCTCCGTTCCTCTCTCCATCCCTC
CGTCTTATTATCCTCTTTCTTACCCTCCCTCCGTCCCTCCCTCCGTCCCT
CCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCGTC
CCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCC
TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCGTC
TCTAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAGGTCTTG
AGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTATCACGTA
CGTGCTCTCCCTCCCTTCCTCCCTCCTCCCCTCCCTCTTTCCCTTTTTTC
AATCCTCTTGGCTCATCTGACCCGCCCTCTCTCCCTCCTTTGTTCCTTTG
TTGAACCCTCCCTCCCTCCCTACCTCCCTCCAGGGCTTTTTTTTGTACCT
GATGCCGTCCCGCGATCACTTTGTGTCCCTCTCAGAGTACATCTATGCCA
TGGTGAGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGGGAGGGGAGGGAAG
AGAATGAACAAAGAAAAATATAAATGCTCATACTTTTACTCGCCCTCTGT
AGGTGCTGCTCCTCCTTCCCTTTCTGCCCCGATTTCTCACCTTCTCCGTG
CGGGCGGTAAGGAAGAAATAATAGTAAATAAAATAATACTAATAAATTAA
ATAACAAGAAGAAATGAAATAAACCTAATTAATAGAATAATAACAATAAA
TAGAAAGGGAGGGAAAGGCCGAATGCCACCGACTGGAATTATTCGTACCT
ACGCTTCTATCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTA
GGGCTACACCTCCCTCCCTTTCGTCTTCTCGTCCTTTCTCCTCCTCCTCT
GCTGGAGCGGCGGGCTCTACTCCTTCCTCCTCTTCGAAGGCGGGAGGGAA
GAAGGGAAGGAGGAACGGTCGAGTCGCTCCTGCCTCTTAATTCCCTCCAT
CCTCCTCCTCTTCTTCTTCTCTGCGACTTTATCCCTTCGCCTCTTCCTCT
CCCTGTTCCCCACCTCTTCTTCGTCGTCCTCCTCCCCCTCCTCGTCCTCC
TCCTCCTCGTCCTCCTCCTTCTCTTCATCCTCCTCCTCTTCCTCCAGGAG
AGCAGGCTTGGGCGCCTTGCTGTGCATTTGGATCATGTGAGGAGGGAGGG
AGAGATGGAGGAAGGGAGGGAGTGAGGGAGGGAGAGAAGGAGGGAGGGAG
GGATGGATGGTTTTGAAGAAGTGCTTTATTCTAAGGTACGGATAGGAGGG
AGGAAAGGAGGGGGGGAAGGGGGGAGGGGTAGTCACAAATGCACTCGAGC
TGCGGCGGGACTGGAGGAAAAGTTCCTTTCCTTTCTCTTCTGTACAAGAA
GGGAAGGAGAAACGGCTCTCCCTCCGTTAGACTCAACCGTTGACAACGTG
TGCTAGAGGAAGAAGGGGGGACGGGAGGGAGGGGAGGAGGGAGGGCAGGG
AGCCTCTTCATGAGCCCTTCGTGCCGTCCCTTTGCCCCTTGCTCGCTTAC
CGTTTTCCTGAAGGTGATAAAGCCACGTGTGTACGGACGCGCTTTTTAAA
ATTTAACGGTTGGCGCGTTTCGAAGAAGGCTCACCACATCATTTTAACAT
GTATGTATGTAAATAAATTCATTCATTCATTCTAATATATATTATGAATA
AATTTATTCATTCATATATGTGAATAAATTCATTTATATATTGACTTAAA
TATATATACACTTATATATATACAATGAATATATCTCGCTCCCTCCCTCT
CATCACAGGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCTCGC
CGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCTCCC
CTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCTTCG
CGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCTCTA
CTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCCTCA
ACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTCATT
TTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCGGGA
GGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAAACGAAAACATGTC
AAAAGAATCATGAAGTACATAAATTAATACGGACTTTGGCAGAGAATAAA
TGAAAAAGAAGAATCAAGAAATGAGACGTCATTACAGACCCTGTTTATGT
CGTGAGGAAGGTCAATGGCGTCATGTAAGCTGCTGTGAAATGCGTCCGTT
ATTAATTTCAAAAATAAATAAAAATTCCTTCCTTCCCCCCTCTTACGTGC
TCTCTCACACAAATACGTTCGTTTCATCTTTCTTTGTGTGTGTGCGTGCT
ACTCTCACCATCTGCTTCGAACAGTCAGGGAAAGGGCGAGAGGAAGGGAG
GGAAGGGCACGCCTACTTTCTTTTCGTTGGCGGCTTTGTCGGAAGAGCAG
AGGGGACAGGAGAGTAGTAGAGGAGAAAGAGGAGGGAGAGATGGCATGCC
TGGAGGAGGAGGGAAGAGACGAAAGTGGAAGGAAAGACGTTGAAAGCCAC
CTCTATCCCCAGCAGGAGGAGGAGCCGGGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr25:29791..34132+ >NO25G00160.1 ID=NO25G00160.1|Name=NO25G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr25:29791..34132+ (Nannochloropsis oceanica) ATGTTCATTCCTGCTATTCGACGGGAAGAAGAGAAGGCCTGGGGCCATCT CCCTCTCCTCCAGTCATGGGCCTCTGAGTATTCGGAACAAGGCCTTATCA TTCCCTACGCCGGCAGCATCCGCGCCGCTATCCTCCTCGACCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCACCCTCCCTCGAGAGGGT GCACCTGCTGACATCAGGCGCCCGTGGTGCTCTTCCCAACATGGATCTAC TGCATTTAGCCTCCACCCTCTTGCCCGCAAAGAGGGTGGAGATGGACTGG AACCCCTCGTCCCGCTTCCCTTTCCAGGGAAAAGGGAGGGAGGGAGGGAG GGAGGGAGGGAGGGACGCCTACTTCGATCGACTGAGGAAAATGAGCGGGT TTGGACTGTCTCTGGCCCTCGGGCCCAATGGAGGACATGCGTGCTTCCTG AGACACGGAATCGACGCCCTCACTATCAAAGCCGAGCCCACCTCAGACGA GGACAATCAAGGCGGCCGCCGTGGCATGGATTTGCTCCTCCTCTTTCAAG GTCTTGAGAAAATTCTCCGATCCCTCAACAACTTGGAAGCCCGCCTGTAT CACGGCTTTTTTTTGTACCTGATGCCGTCCCGCGATCACTTTGTGTCCCT CTCAGAGTACATCTATGCCATGGTGCTGCTCCTCCTTCCCTTTCTGCCCC GATTTCTCACCTTCTCCGTGCGGGCGGGCTACACCTCCCTCCCTTTCGTC TTCTCGTCCTTTCTCCTCCTCCTCTGCTGGAGCGGCGGGCTCTACTCCTT CCTCCTCTTCGAAGGCGGGAGGGAAGAAGGGAAGGAGGAACGGTCGAGTC GCTCCTGCCTCTTAATTCCCTCCATCCTCCTCCTCTTCTTCTTCTCTGCG ACTTTATCCCTTCGCCTCTTCCTCTCCCTGTTCCCCACCTCTTCTTCGTC GTCCTCCTCCCCCTCCTCGTCCTCCTCCTCCTCGTCCTCCTCCTTCTCTT CATCCTCCTCCTCTTCCTCCAGGAGAGCAGGCTTGGGCGCCTTGCTGTGC ATTTGGATCATGTACTCCCAGCTCGCCCTCACCTTCCTCAACTACAGCCT CGCCGTCCTCCTCTCCCTCCCCCTCCTCCTCTTCACCTTCCTTTTGCCCT CCCCTTCCTTTCCCTCCTCCTCTCCCTCCCCTTCCCCCTCCTCCTCCTCT TCGCGTGTCCTCAGACAAAGGCTCGCAATCGTCTTCCTCCTTCTTCTCCT CTACTTCCTCCCCTTCTTCCTCCCTCCCGCCCTCCCTCGGCTTCTCCTCC TCAACCACCTCCTCTACTTCGACGTGCACGTGCCTTGGTTCTGCTTTGTC ATTTTCCCCTGTCTGGCCTTACTGACCGTACTGGCATGGGCGGGCGGGCG GGAGGGAGGGACGGAGGGACGGAGGGAAGACCAACAGTAA back to top
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