NO24G02480.2, NO24G02480.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02480.2
Unique NameNO24G02480.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr24:679094..682759 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:679094..682759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02480.2 vs.
Match: EWM24460.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 297.4 bits (760), Expect = 7.200e-77
Identity = 165/237 (69.62%), Postives = 189/237 (79.75%), Query Frame = 0 
Query:  113 LEKERKLQTTIPMLGKIEAWEEARKQGAKEVLEIKPSKRRRRTAPSSTPSTSSSSFTSSS-------SSPDEKGGL--KGGREEEEGEEEEEEEEEYVPIDAMYRDELDISAADGTNMRGYLVSSKMAQQFWRREERPVVLLLTDERGWRSVQMRKLADHMAFLTNHVFLVPDLYRGEVYGEDSTKEAWREAHPPIRLLQDARSAMACLVRNYNATATGIVGFGVGGGQALSAVASG 341
            +EKER+LQ  +PML  +EAWEEAR +GAKEV+EI P   R+ TA +S           +           +EK G+  K  +EEEE EEEEEEEEEYVPIDAM+RDE+D++AADGT+MRGYLVSSKMAQ+FWRREERPVVLLL DERGWRSVQ RKLADHM+FL+NHVF VPDLYRG+V+ +  +KEAWR AHPPIRLLQDARSAM  LVRNYNATATGIVGFGVGGGQALSAVASG
Sbjct:    1 MEKERRLQAAMPMLQTVEAWEEARMEGAKEVVEITPRLPRKPTARASEGKMKEKKKDGAGFKDEEGLRQEEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASG 237
The following BLAST results are available for this feature:
BLAST of NO24G02480.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24460.17.200e-7769.62conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02480NO24G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02480.2NO24G02480.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02480.2.cds1NO24G02480.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds2NO24G02480.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds3NO24G02480.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds4NO24G02480.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds5NO24G02480.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds6NO24G02480.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds7NO24G02480.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds8NO24G02480.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02480.2.cds9NO24G02480.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02480.2 ID=NO24G02480.2|Name=NO24G02480.2|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp
TCCTCGAACCCCCCAACCCCCCCCTCCTCATCTGCTGCCACTGCTGTTGC
CGCCGACGACGTCGAGGCGTTGTACGTGTCGTCCATGCCGGACTACCCGC
CTGACGCCCCGCAGCACCAGATCAAGAAGCGACATGTGGGGTGGGACGGA
GCCCTGGAAGGGTACACACTGGCAGATGGCAGCTATGTGGGCGTCAAGGA
GGATCCCCGCCTCAACGACAAGGACCGGCGGGACATGGAGGAGGCTTTTC
GCAAGGAGGTGCTTCGGTGGGAAGCTGACTATCCGCAGCAGTGGGCCCAG
CTGATGAGCATGTGCGACGAGGCAGCCGCAACCAAGCAGGCGGCGATTGG
CGTGGAGGCAGCCCTGAAGGAGCGGGAGAAGGACGAGGAGATGGAGAAGC
GGGTGAGGGAGATCGAGAGGCTGGAGAAGGAGAGGAAGCTGCAGACGACC
ATCCCGATGCTCGGGAAGATAGAGGCCTGGGAGGAGGCGAGGAAGCAGGG
CGCGAAGGAGGTACTGGAGATCAAGCCCAGCAAAAGAAGGCGTCGCACCG
CCCCATCCTCCACCCCCTCCACTTCGTCCTCCTCCTTCACGTCCTCCTCA
TCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGGGGCGAGAGGAGGAGGA
AGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTACGTGCCTATCGATGCCA
TGTACCGCGACGAGCTCGACATCTCCGCTGCTGATGGGACCAACATGCGC
GGCTACCTAGTCTCCAGTAAGATGGCCCAGCAATTCTGGCGACGGGAAGA
GAGGCCCGTCGTCCTCCTGCTCACGGATGAAAGGGGATGGCGGAGTGTCC
AAATGCGGAAGCTGGCCGACCACATGGCATTCTTGACGAACCACGTGTTT
TTAGTGCCCGACTTGTACAGAGGCGAGGTCTACGGGGAGGATAGCACCAA
GGAGGCGTGGAGGGAGGCGCACCCGCCCATCCGCCTCCTCCAAGACGCCC
GGAGCGCCATGGCCTGTCTTGTGCGGAACTACAACGCCACCGCTACTGGC
ATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTCTCTCCGCCGTTGCTAG
TGGTACGTCTCCTTCCACCTCCCTCATTTCCTCCCTCTCTCCCTCCTCCC
CCTCCTTCTCCCCTGTCACTTCTCATCTCTTACTCCCCGCCCTCCTTCCT
CAAGCGATATCAAAAACGCACGACTTATCCTCCCTCCCTCCCTCCCTCTG
CCAGGCTACATCAAGTCCCACGCCGTGGTGGCCATGTCCCCTTCTGGCTA
CGACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCGACCCCCACACTGGTAG
TCTTTGCCGGTCAGGACAGCGAAGAGGTTAGGAAGGGAGGGAGGAAAGGA
GGGAAGGAGAGAGGGAAGGGGGGACAGACAGGGGGAGTGCATACTACATG
CACCCAAAATGTCCAAAGTCTTGTCTGAGGTTCCCACACTTCTAGTGTAG
GAGCAGTGGGCGGGTGGACGGTCGTGGGAGAGATGTGAGAGAACTTCGGC
GATTGGAATAAATGTGGTCTAGTATTGTAATCCTCTTCCCATCTATACTC
TTTCTAACAGGCACCGCTTCAGGACGCCCTGACCTTGATGGACGGCTTTG
CCTCACACAAAGCACTGCCTTACATGGTGGGTGTCAGTCTCCTGCCCTCC
TTCTTTCGCTCCTTTTCCCCTTCGTTCCCATTGAAATTTCTTGTAATCCT
TCCCCCCTCCCTCCCCTTTCCTCGCTCCATCCTTTGCTTTTTCCTTCCCT
CCCCAGGTCCGGGTATTTAAAGACTGCCATTCCCACTTTCTCACCCGCCC
AAAGCAAGGGGAGGAGGGGCCGGCGGAGGATGCCGTGATGCTGGCCACCA
GCTGGTTGGAGATACAGCTGCGGAGAGGGAAGGCCAAGATGATAAGAGAC
TCCCGAATTGTCTAGGGAGGGAGAGAGGGAGGAAGGTTGAGAGAAATGTA
TGTAATTAAGAGGAGTTGGAGAACCAGCTTCCATAAAATATAAGGGGAGA
GGTGAAAAGAAGAAGAAAACTAGAGCAGTTGTGACACAAATCGAACCTGG
AAAGATCGGGCGCAGA
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protein sequence of NO24G02480.2

>NO24G02480.2-protein ID=NO24G02480.2-protein|Name=NO24G02480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MPDYPPDAPQHQIKKRHVGWDGALEGYTLADGSYVGVKEDPRLNDKDRRD
MEEAFRKEVLRWEADYPQQWAQLMSMCDEAAATKQAAIGVEAALKEREKD
EEMEKRVREIERLEKERKLQTTIPMLGKIEAWEEARKQGAKEVLEIKPSK
RRRRTAPSSTPSTSSSSFTSSSSSPDEKGGLKGGREEEEGEEEEEEEEEY
VPIDAMYRDELDISAADGTNMRGYLVSSKMAQQFWRREERPVVLLLTDER
GWRSVQMRKLADHMAFLTNHVFLVPDLYRGEVYGEDSTKEAWREAHPPIR
LLQDARSAMACLVRNYNATATGIVGFGVGGGQALSAVASGTSPSTSLISS
LSPSSPSFSPVTSHLLLPALLPQAISKTHDLSSLPPSLCQATSSPTPWWP
CPLLATTRLRSRRPCRRPPHW*
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mRNA from alignment at chr24:679094..682759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02480.2 ID=NO24G02480.2|Name=NO24G02480.2|organism=Nannochloropsis oceanica|type=mRNA|length=3666bp|location=Sequence derived from alignment at chr24:679094..682759- (Nannochloropsis oceanica)
TCCTCGAACCCCCCAACCCCCCCCTCCTCATCTGCTGCCACTGCTGTTGC
CGCCGACGACGTCGAGGCGTTGTACGTGTCGTCCATGCCGGACTACCCGC
CTGACGCCCCGCAGCACCAGATCAAGAAGCGACATGTGGGGTGGGACGGA
GCCCTGGAAGGGTACACACTGGCAGATGGCAGCTATGTGGGCGTCAAGGT
AGGGAGGAAGGGAGGGAGTGAGGGAGAGAGGAAGGGAGGGAATTGCTTAC
CACTACATGGATGTTCTAGTGGAGGGTTTATCTCACATTCTTCTCTTCCC
TCTACCTGTGTGTGTGTGTCTCGCTCCCTCTCTTTTCCTCAATCTGCTTT
TATTCCTCTTCTCGGCTCTGTAACAGGAGGATCCCCGCCTCAACGACAAG
GACCGGCGGGACATGGAGGAGGCTTTTCGCAAGGAGGTGCTTCGGTGCGT
CCCTCCCTTCCTCCCTTCCTCGCTCTATACCCATCCTCATCCATCCTATC
CCTTATTTCAACCTTTTCTCTGGCCCACCCTGCGCTGCCCACTCCTCCCT
CCCCACCATCTCACTCCCTTCTCCTGCTTTCTCTCTCTCCCTCCCTCCCT
CCCTCCCTCCGCTCTTCCGTCCCTCGTAGGTGGGAAGCTGACTATCCGCA
GCAGTGGGCCCAGCTGATGAGCATGTGCGACGAGGCAGCCGCAACCAAGC
AGGCGGCGATTGGCGTGGTAGGGAGGGAGGGAGAAAGGGAGGGAGGAAGG
AAGGGATGACCGGAGGACAGAGATGGAGGAGCAGGGGCGTGGTGCTGTGC
TGGAAGCTTTGGCCCTCTTCTTGCCTTTGGATGGAACGCGTAAACTCGCG
CTCCTTCCCCCCCTCCCTCCCTTCCTTTCTCCCTCATTGAAGCAGCTCTG
TCTAAGCAGGAGGACGAGAGCGAGGGACAGGTGCCAAAAATTGAGAGATC
GGAATCGGAAGAGCAACCACTGACCTCCCCTCCCTCCCTACACCCCTCTC
CTCTCCTCCCTTTACCGCACCAGGAGGCAGCCCTGAAGGAGCGGGAGAAG
GACGAGGAGATGGAGAAGCGGGTGAGGGAGATCGAGAGGCTGGAGAAGGA
GAGGAAGCTGCAGACGACCATCCCGATGCTCGGGAAGATAGAGGCCTGGG
AGGAGGCGAGGAAGCAGGGCGCGAAGGAGGTACTGGAGATCAAGCCCAGG
TAGGGAGGGAGGGAAGGAGGGAGGGAGGAGCAGAAAGAAATAAAGCAGTT
TTTGTCATCCTGTTCCATCGTTAAGTCGCACTCACGCCTGCTCTTCCTCC
CTCTCCCTTCCTCCCTCCCTCCGCCCCCCTTCCTTCTTGCCAGCAAAAGA
AGGCGTCGCACCGCCCCATCCTCCACCCCCTCCACTTCGTCCTCCTCCTT
CACGTCCTCCTCATCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGGGGC
GAGAGGAGGAGGAAGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTACGTG
CCTATCGATGCCATGTACCGCGACGAGCTCGACATCTCCGCTGCTGATGG
GACCAACGTACGTCCTCCCTCCTTCCCTCCCTTCTTCCCTTCCTCCTTCC
CTTCTTTCCTACCTCCATTTCTGCCTCCTACTCCTCTTCTATGTCCTCCC
TCTCGCCCTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCAGATGCGCGGC
TACCTAGTCTCCAGTAAGATGGCCCAGCAATTCTGGCGACGGGAAGAGAG
GCCCGTCGTCCTCCTGCTCACGGATGAAAGGGGATGGTAAGAGAAGGGAG
GGAGAGAGGGAGAGGGACAGGGAGGGAGGGAGCTGAATGTCGAGACTGTC
GCCACCTCCTCTTATGACTCCCAAGCAGCTCGCGCCTCTCCCTATTTATC
TCCCTACCTCTTTCCCTCCCTTCCCTTCTCCCCTCTCTCGATCTGCAGGC
GGAGTGTCCAAATGCGGAAGCTGGCCGACCACATGGCATTCTTGACGAAC
CACGTGTTTTTAGTGCCCGACTTGTACAGAGGCGAGGTCTACGGGGAGGA
TAGCACCAAGGAGGCGTGGAGGGAGGCGGTGAGCGAGGGAGGGAAAGAGA
GACGGAGGATGACGAAGGCGGATAGAAGACTGGATGGGATGGCGATGTTT
GACTCACTTCTTTTTTGTTCTCTCCTCTCTTTTCTCCCTCCTTCCTTCCC
TCTTTACTCCTTTGTGTAGCACCCGCCCATCCGCCTCCTCCAAGACGCCC
GGAGCGCCATGGCCTGTCTTGTGCGGAACTACAACGCCACCGCTACTGGT
ACGTTCTATCCCCTCCTCCCTCTCTCCCTCCTCTCTCCTCTCGCTCTCTC
TTCCCTCATCCCTTACATCCTTTGGGGGTCAAACCAAACCACACTCTTTT
TCCTCCATCGTCGTGTATCCGCCCTACGTACCCGTGTCATCCGATCTACA
CCTTCCGGAGCCCTGTCACCCTCTATACTTAGACTATTTGCAGTCATATC
ACCTTGTTGACACTCATACATGTATATATATATATATCACCCTACACATA
CTCTTTTCCCAATTTACACTCCATTTATCCCAATTACCCTACAAACAGGC
ATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTCTCTCCGCCGTTGCTAG
TGGTACGTCTCCTTCCACCTCCCTCATTTCCTCCCTCTCTCCCTCCTCCC
CCTCCTTCTCCCCTGTCACTTCTCATCTCTTACTCCCCGCCCTCCTTCCT
CAAGCGATATCAAAAACGCACGACTTATCCTCCCTCCCTCCCTCCCTCTG
CCAGGCTACATCAAGTCCCACGCCGTGGTGGCCATGTCCCCTTCTGGCTA
CGACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCGACCCCCACACTGGTAG
TCTTTGCCGGTCAGGACAGCGAAGAGGTTAGGAAGGGAGGGAGGAAAGGA
GGGAAGGAGAGAGGGAAGGGGGGACAGACAGGGGGAGTGCATACTACATG
CACCCAAAATGTCCAAAGTCTTGTCTGAGGTTCCCACACTTCTAGTGTAG
GAGCAGTGGGCGGGTGGACGGTCGTGGGAGAGATGTGAGAGAACTTCGGC
GATTGGAATAAATGTGGTCTAGTATTGTAATCCTCTTCCCATCTATACTC
TTTCTAACAGGCACCGCTTCAGGACGCCCTGACCTTGATGGACGGCTTTG
CCTCACACAAAGCACTGCCTTACATGGTGGGTGTCAGTCTCCTGCCCTCC
TTCTTTCGCTCCTTTTCCCCTTCGTTCCCATTGAAATTTCTTGTAATCCT
TCCCCCCTCCCTCCCCTTTCCTCGCTCCATCCTTTGCTTTTTCCTTCCCT
CCCCAGGTCCGGGTATTTAAAGACTGCCATTCCCACTTTCTCACCCGCCC
AAAGCAAGGGGAGGAGGGGCCGGCGGAGGATGCCGTGATGCTGGCCACCA
GCTGGTTGGAGATACAGCTGCGGAGAGGGAAGGCCAAGATGATAAGAGAC
TCCCGAATTGTCTAGGGAGGGAGAGAGGGAGGAAGGTTGAGAGAAATGTA
TGTAATTAAGAGGAGTTGGAGAACCAGCTTCCATAAAATATAAGGGGAGA
GGTGAAAAGAAGAAGAAAACTAGAGCAGTTGTGACACAAATCGAACCTGG
AAAGATCGGGCGCAGA
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Coding sequence (CDS) from alignment at chr24:679094..682759-

>NO24G02480.2 ID=NO24G02480.2|Name=NO24G02480.2|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr24:679094..682759- (Nannochloropsis oceanica)
ATGCCGGACTACCCGCCTGACGCCCCGCAGCACCAGATCAAGAAGCGACA
TGTGGGGTGGGACGGAGCCCTGGAAGGGTACACACTGGCAGATGGCAGCT
ATGTGGGCGTCAAGGAGGATCCCCGCCTCAACGACAAGGACCGGCGGGAC
ATGGAGGAGGCTTTTCGCAAGGAGGTGCTTCGGTGGGAAGCTGACTATCC
GCAGCAGTGGGCCCAGCTGATGAGCATGTGCGACGAGGCAGCCGCAACCA
AGCAGGCGGCGATTGGCGTGGAGGCAGCCCTGAAGGAGCGGGAGAAGGAC
GAGGAGATGGAGAAGCGGGTGAGGGAGATCGAGAGGCTGGAGAAGGAGAG
GAAGCTGCAGACGACCATCCCGATGCTCGGGAAGATAGAGGCCTGGGAGG
AGGCGAGGAAGCAGGGCGCGAAGGAGGTACTGGAGATCAAGCCCAGCAAA
AGAAGGCGTCGCACCGCCCCATCCTCCACCCCCTCCACTTCGTCCTCCTC
CTTCACGTCCTCCTCATCTTCCCCGGATGAGAAGGGGGGCCTGAAGGGGG
GGCGAGAGGAGGAGGAAGGTGAGGAGGAGGAGGAGGAGGAGGAAGAGTAC
GTGCCTATCGATGCCATGTACCGCGACGAGCTCGACATCTCCGCTGCTGA
TGGGACCAACATGCGCGGCTACCTAGTCTCCAGTAAGATGGCCCAGCAAT
TCTGGCGACGGGAAGAGAGGCCCGTCGTCCTCCTGCTCACGGATGAAAGG
GGATGGCGGAGTGTCCAAATGCGGAAGCTGGCCGACCACATGGCATTCTT
GACGAACCACGTGTTTTTAGTGCCCGACTTGTACAGAGGCGAGGTCTACG
GGGAGGATAGCACCAAGGAGGCGTGGAGGGAGGCGCACCCGCCCATCCGC
CTCCTCCAAGACGCCCGGAGCGCCATGGCCTGTCTTGTGCGGAACTACAA
CGCCACCGCTACTGGCATCGTGGGCTTCGGTGTCGGGGGTGGGCAAGCTC
TCTCCGCCGTTGCTAGTGGTACGTCTCCTTCCACCTCCCTCATTTCCTCC
CTCTCTCCCTCCTCCCCCTCCTTCTCCCCTGTCACTTCTCATCTCTTACT
CCCCGCCCTCCTTCCTCAAGCGATATCAAAAACGCACGACTTATCCTCCC
TCCCTCCCTCCCTCTGCCAGGCTACATCAAGTCCCACGCCGTGGTGGCCA
TGTCCCCTTCTGGCTACGACGCGCCTAAGGTCGCGGAGGCCCTGCAGGCG
ACCCCCACACTGGTAG
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Synonyms
Publications