Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:639031..642628 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02350.1 vs.
Match: XP_005847983.1 (hypothetical protein CHLNCDRAFT_145492 [Chlorella variabilis]; EFN55881.1 hypothetical protein CHLNCDRAFT_145492 [Chlorella variabilis])
HSP 1 Score: 131.0 bits (328), Expect = 7.800e-27
Identity = 99/261 (37.93%), Postives = 124/261 (47.51%), Query Frame = 0
Query: 66 RDAMGGLSGGMTSVVGGFGLGLASLVAAPTIGAQQYGVKGFLAGLGAGLAGCVVLPVGGGGWRLLHHRRRGEYSHLCPSNVSRSRLGLAFAKMGQIRFEGGGCACPGRQGGRGRGRDSGNNNCSSNSIYRRKWRGGQGRKKGGREGGREGGGEEEARSLYEILGVDRTASPDTIKKAYYRAALAVHPDRVVAHDRYTQGRFQRLSEAYQILSTPDLRAAYDKEGMKACQHATFIDGDVFFTMLFGSERFRPYLGKLFLASA 327
RD GL+ G S+ G G LVAAP IGA Q G KGF G AG+AG V+LPV G R + SN S+ R A I G A G R +WR Q R +GG GGGE + YE+LGV+R ASP+ IK+ YY A +HPD+ D +FQRL EAYQ+L +LR YD G + ++DG FFT LFGS+RF +G+L L +A
Sbjct: 23 RDLGAGLASGAKSIAKGVLAGAIGLVAAPAIGAAQDGFKGFAKGAAAGIAGAVILPVTGVAVGTAQVVRGAVNTPEAISNASKGR-HWDEASRSWIDAPGMALAVDG----------------DDQRAARSQWRRVQQRARGG------GGGEGVEQEFYELLGVERDASPEEIKRQYYLLARRMHPDKNPG-DPEANAKFQRLGEAYQVLGNAELRKRYDAHGAEGLD-VNYVDGAEFFTALFGSDRFSHLVGELMLTAA 258
The following BLAST results are available for this feature:
BLAST of NO24G02350.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 7.80e-27 / Id = 37.93 Sequence XP_005847983.1
Match Name E-value Identity Description
XP_005847983.1 7.800e-27 37.93 hypothetical protein CHLNCDRAFT_145492 [Chlorella ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp CTTCGAGTCGGCTGCAGAAAGGAGAGTGGTGACCGGCCTGTTTCTTACTA TGTGGTAGTGTGTCGATGTGTTGTGGGGCGAGCCGCGTGGATAAGCGTGG ATCTGGGGCGTTGTATGGAATGCAAGCAAGATACATGGCTCTGTGTGTTG ATCACCAGGAGCTTGGGCTGAGGAAAATCAGCCTGTATCCCACACAAACA CCAATCGATCCCCCCCCCACACGACAAGATGACATGATACGAAAGCCATC GCCATGATTGGTGTCAAAGGAATAAAAGGCTGGCCGGACTAGTCACGCTG ACGACTGATGATTATGAAGTGTATAATTCTTCCGGCGTTGGGGGGGGAAT CATTGACGATTGTGGGATCGTGAGTGACTTTCCTTGTGCCTTATTTTCTT ACTTGTTGGAAACCAAACACACGTGCTACTAGGCCAAGAGCCTTCCCAAC TTTACAATTCAGTGACACAGAGCAAAACTCCCCCTGCGAGAAGGGGTTTC TGGCCGCTTTCAATTCATAAGTGAGCCTCCAGAGCCCCAAGGATCGCCTG TTCGCCGCGCCAGCGCAACACCTGCCGCAAAGCTGCCCACACGATTGATT CAACTCAAGTTCCACTTCCACTTGTCCCCGTCCTGACCCACACCCACACC CACGCCCATAGGAAGTTCGAGTTTTGGCAGGCACCTGTCTCGTACTGTGT ACATGACTTTTTTGCCGCTGGCCAAGGTTAACTTTTGCTACGTCCGCCTT CGCCCGATCATGTCCCGCTGCTGATGGCCATCCTCGAGCCACAGCCACCC CAAAAAGGCACACAGAACCCATCCATTACAGCAACAGATTGCGGCATATG TCCAACTTATCGTCGCTCGTGTCTAGCCAAATTGTCCTTTTTTCTACGCC TTCTCCTCTGACCTTCGTTCTTCCCCTTCCACCCCCACCCCTAACCGACC GTCCCATTGTACGTTGTACAGAGAGCGCGATGAACACCCCACCACCACTC TATCCCTCGCCGAGGGGCTCCCCACCATCGATGTGGGACGCCGTGCTGCC CGAGAACAAGACGATCCGCCGGGCTCGCTGGGGGGCTTGATGAGATCTGC CTCCACATCCTCCCCTTCAGTGTCTCTTGGAGGCGCTCGTCTTCCCCCTT CGCCCTCCTCCGCCCTCGCCCTCTCCCGGAGTAGCAGCAGCAGCAGCATG GGCAACCAGAGCACCGGTAAGGGCGGAAATAGCCTTGTAACTTGGGCTCA TTCCTCCTCGCGGTCACTTTTGAATCATTCGGCGCGAGATGCGATGGGTG GGCTCTCAGGCGGGATGACTTCGGTAGTTGGCGGATTCGGTCTCGGCCTG GCATCCCTCGTCGCCGCCCCGACCATCGGTGCGCAGCAATACGGCGTGAA GGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTGCGTGGTGCTGC CAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAGGCGGCGTGGTGAA TACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCGTCTGGGACTCGC TTTTGCAAAAATGGGTCAAATACGATTTGAAGGAGGAGGCTGCGCGTGTC CTGGACGGCAAGGAGGAAGAGGACGAGGACGAGACAGCGGCAACAACAAC TGCAGCAGCAACAGCATCTACAGAAGAAAGTGGAGGGGAGGGCAAGGACG AAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAGGAGGAAG CACGGTCGCTCTACGAGATTTTGGGGGTGGATCGAACGGCCTCGCCCGAC ACCATCAAAAAGGCCTACTACAGGGCCGCTCTGGCAGTGCATCCAGATCG GGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTCCAACGGCTCTCGG AGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGCCGCCTACGACAAG GAAGGAATGAAGGCCTGCCAGCACGCCACCTTCATCGACGGCGACGTCTT CTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTTATCTGGGAAAAC TTTTTTTAGCCTCCGCCATTGGCGTTCTGGGGAAGCTCAGTGTCAGTGGC ACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAGGCCCAGGAAGG GGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTAA back to top protein sequence of NO24G02350.1
>NO24G02350.1-protein ID=NO24G02350.1-protein|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp MRSASTSSPSVSLGGARLPPSPSSALALSRSSSSSSMGNQSTGKGGNSLV TWAHSSSRSLLNHSARDAMGGLSGGMTSVVGGFGLGLASLVAAPTIGAQQ YGVKGFLAGLGAGLAGCVVLPVGGGGWRLLHHRRRGEYSHLCPSNVSRSR LGLAFAKMGQIRFEGGGCACPGRQGGRGRGRDSGNNNCSSNSIYRRKWRG GQGRKKGGREGGREGGGEEEARSLYEILGVDRTASPDTIKKAYYRAALAV HPDRVVAHDRYTQGRFQRLSEAYQILSTPDLRAAYDKEGMKACQHATFID GDVFFTMLFGSERFRPYLGKLFLASAIGVLGKLSVSGTEADLSFADKEDE AQEGGREGRRERRMEE* back to top mRNA from alignment at chr24:639031..642628-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3598bp|location=Sequence derived from alignment at chr24:639031..642628- (Nannochloropsis oceanica) CTTCGAGTCGGCTGCAGAAAGGAGAGTGGTGACCGGCCTGTTTCTTACTA
TGTGGTAGTGTGTCGATGTGTTGTGGGGCGAGCCGCGTGGATAAGCGTGG
ATCTGGGGCGTTGTATGGAATGCAAGCAAGATACATGGCTCTGTGTGTTG
ATCACCAGGAGCTTGGGCTGAGGAAAATCAGCCTGTATCCCACACAAACA
CCAATCGATCCCCCCCCCACACGACAAGATGACATGATACGAAAGCCATC
GCCATGATTGGTGTCAAAGGAATAAAAGGCTGGCCGGACTAGTCACGCTG
ACGACTGATGATTATGAAGTGTATAATTCTTCCGGCGTTGGGGGGGGAAT
CATTGACGATTGTGGGATCGTGAGTGACTTTCCTTGTGCCTTATTTTCTT
ACTTGTTGGAAACCAAACACACGTGCTACTAGGCCAAGAGCCTTCCCAAC
TTTACAATTCAGTGACACAGAGCAAAACTCCCCCTGCGAGAAGGGGTTTC
TGGCCGCTTTCAATTCATAAGTGAGCCTCCAGAGCCCCAAGGATCGCCTG
TTCGCCGCGCCAGCGCAACACCTGCCGCAAAGCTGCCCACACGATTGATT
CAACTCAAGTTCCACTTCCACTTGTCCCCGTCCTGACCCACACCCACACC
CACGCCCATAGGAAGTTCGAGTTTTGGCAGGCACCTGTCTCGTACTGTGT
ACATGACTTTTTTGCCGCTGGCCAAGGTTAACTTTTGCTACGTCCGCCTT
CGCCCGATCATGTCCCGCTGCTGATGGCCATCCTCGAGCCACAGCCACCC
CAAAAAGGCACACAGAACCCATCCATTACAGCAACAGATTGCGGCATATG
TCCAACTTATCGTCGCTCGTGTCTAGCCAAATTGTCCTTTTTTCTACGCC
TTCTCCTCTGACCTTCGTTCTTCCCCTTCCACCCCCACCCCTAACCGACC
GTCCCATTGTACGTTGTACAGAGAGCGCGATGAACACCCCACCACCACTC
TATCCCTCGCCGAGGGGCTCCCCACCATCGATGTGGGACGCCGTGCTGCC
CGAGAACAAGACGATCCGCCGGGCTCGCTGGGGGGCTTGATGAG GTAAGG
AAGGAGAGGGCGGAGGGAAGGCAGGGATAGGGAAAGGACAAGTTGATTAT
GTACATTTTTAAAAGAAAGAAAAAAGGTGTCCATCCATTTACTCACATTG
CTGACCTGCACCCTCCTCTCCCATGTAGATCTGCCTCCACATCCTCCCCT
TCAGTGTCTCTTGGAGGCGCTCGTCTTCCCCCTTCGCCCTCCTCCGCCCT
CGCCCTCTCCCGGAGTAGCAGCAGCAGCAGCATGGGCAACCAGAGCACCG
GTAAGGGCGGAAATAGCCTTGTAACTTGGGCTCATTCCTCCTCGCGGTCA
CTTTTGAATCATTCGGCGCG GTAAGGAAGGAGGGAGGGAGGGAGGGAGGG
AAGGAAGGAAGGAGGGAGGGATGATGGGAACGCGGAGTAACTGTGCCACC
TCTCGATCCTAAAAAGCTCAACTTCCTTCCCTCCTTTCCTCCCTTCCTCC
CACCCTTCTTCTCTCTAGAGATGCGATGGGTGGGCTCTCAGGCGGGATGA
CTTCGGTAGTTGGCGGATTCGGTCTCGGCCTGGCATCCCTCGTCGCCGCC
CCGACCATCGGTGCGCAGCAATACG GTACGTTGTTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTCTCTCCCTCCCTTAATATACAAGGCGAGCAAGC
GATAGACATCTGTCCAAATCGCCTACCTCCCTCCTTCCATCCCTCCCGCT
CCCGTTTCCTTGTGCATTGCCTCCCTATTTACAGACATGAAAAAATACAC
CCATGAGTAAAGGAGGTGTATCTGTATACATACAGTTCTTGCATTTTTTC
TTCAGGCGTGAAGTATTTCACCTGCTCTCAGCGCTAACCCTCCTTCCCAC
TCCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCTCTCTCCCCCTCCCTCCC
CCTCTCCCTCCCTCCCCCTCTTCCTCCCTCCCTCCCTCCCTCCCTTCTTA
GGCGTGAAGGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTGCGT
GGTGCTGCCAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAG GTAGG
TGAGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAAAGAGGGAAGAAGTCT
CCCCACATCATATGCTTATTCTTGCCTCATGCGCACCCTCCCTCCCTAGG
CGGCGTGGTGAATACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCG
TCTGGGACTCGCTTTTGCAAAAATGGGTCAA GTGCGTTGCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCCTCTTCCTTA
CTACTTCAATCGTGCTGAACCTCCTCCTCCCCTTTCTCCCTCTTTCCGTC
CTTCCCTAGATACGATTTGAAGGAGGAGGCTGCGCGTGTCCTGGACGGCA
AGGAGGAAGAGGACGAGGACGAGACAGCGGCAACAACAACTGCAGCAGCA
ACAGCATCTACAGAAGAAAGTGGAGGGGAGGGCAAGGACGAAAGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAGGAGGAAGCACGGTCGCT
CTACGAGATTTTGGGGGTGGATCGAACGGCCTCGCCCGACACCATCAAAA
AGGCCTACTACAGG GTAGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGAAGAAGAAAAGAAACGTGCTAGAATAGCTCATGGGTTACCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGGCCGCTCTGGCAG
TGCATCCAGATCGGGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTC
CAACGGCTCTCGGAGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGC
CGCCTACGACAAGGAAGGAATGAAG GTAGGGACCCTCCCTCCCTCCCTCC
CTCCCTCCCTATCGACCTATACGAGGCGTTTCACTCAAACTGCGTGTGAT
ATCGTGCATGTATCACCTGAATTCGGACTCTTTGCTTTCCCTCCCTCCCT
CCCTCCTTCCTTCCCTCCCTTCATACCCTGTAGTCCTCCCTCCCTCCCTC
CCTCCCTCACTCCCTCAAATAATTCCTTACCCTCTCCTCCCTCCCTCCCT
CTCTCCCCCCTTCCCTCCCTCCAGGCCTGCCAGCACGCCACCTTCATCGA
CGGCGACGTCTTCTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTT
ATCTGGGAAAACTTTTTTTAGCCTCCGCCATTG GTACTTTTCCCTCCCTC
CCTTCCTCCCTACCTTACTCCCTCTCTTGTTTGTTTTTTCGCTCTGACCT
CTTTTCCTGTTTTATTCACCCGATAAAGACATTAAACTCGCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCGTTCTGGGGAAGCTCAGTG
TCAGTGGCACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAGGCC
CAGGAAGGGGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTAA back to top Coding sequence (CDS) from alignment at chr24:639031..642628-
>NO24G02350.1 ID=NO24G02350.1|Name=NO24G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr24:639031..642628- (Nannochloropsis oceanica) ATGAGATCTGCCTCCACATCCTCCCCTTCAGTGTCTCTTGGAGGCGCTCG TCTTCCCCCTTCGCCCTCCTCCGCCCTCGCCCTCTCCCGGAGTAGCAGCA GCAGCAGCATGGGCAACCAGAGCACCGGTAAGGGCGGAAATAGCCTTGTA ACTTGGGCTCATTCCTCCTCGCGGTCACTTTTGAATCATTCGGCGCGAGA TGCGATGGGTGGGCTCTCAGGCGGGATGACTTCGGTAGTTGGCGGATTCG GTCTCGGCCTGGCATCCCTCGTCGCCGCCCCGACCATCGGTGCGCAGCAA TACGGCGTGAAGGGCTTCCTCGCCGGCCTCGGTGCGGGGCTAGCGGGCTG CGTGGTGCTGCCAGTGGGGGGTGGTGGGTGGCGTCTCCTACATCATAGGC GGCGTGGTGAATACTCCCACCTCTGTCCTTCAAATGTCTCGAGGTCGCGT CTGGGACTCGCTTTTGCAAAAATGGGTCAAATACGATTTGAAGGAGGAGG CTGCGCGTGTCCTGGACGGCAAGGAGGAAGAGGACGAGGACGAGACAGCG GCAACAACAACTGCAGCAGCAACAGCATCTACAGAAGAAAGTGGAGGGGA GGGCAAGGACGAAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGG GGAGGAGGAAGCACGGTCGCTCTACGAGATTTTGGGGGTGGATCGAACGG CCTCGCCCGACACCATCAAAAAGGCCTACTACAGGGCCGCTCTGGCAGTG CATCCAGATCGGGTAGTGGCCCACGACCGTTACACCCAAGGCCGTTTCCA ACGGCTCTCGGAGGCCTACCAGATTCTCTCCACCCCCGATCTCAGGGCCG CCTACGACAAGGAAGGAATGAAGGCCTGCCAGCACGCCACCTTCATCGAC GGCGACGTCTTCTTTACCATGCTCTTTGGCTCCGAGCGCTTTCGGCCTTA TCTGGGAAAACTTTTTTTAGCCTCCGCCATTGGCGTTCTGGGGAAGCTCA GTGTCAGTGGCACCGAAGCCGACCTGTCGTTTGCAGACAAGGAGGACGAG GCCCAGGAAGGGGGGAGGGAGGGGAGGAGGGAAAGAAGGATGGAGGAGTA A back to top