NO24G02170.2, NO24G02170.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02170.2
Unique NameNO24G02170.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2306
Alignment locationchr24:577781..581528 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:577781..581528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02170.2 vs.
Match: XP_009822167.1 (hypothetical protein H257_00930 [Aphanomyces astaci]; ETV87304.1 hypothetical protein H257_00930 [Aphanomyces astaci])

HSP 1 Score: 194.1 bits (492), Expect = 7.100e-46
Identity = 144/333 (43.24%), Postives = 194/333 (58.26%), Query Frame = 0 
Query:    7 KPATLPQIFSKGAEALNLSTVGAEMA---ALNSDP-LFQQYLAKITEKGFFKGLEEGSKAYLDRFLKAAGKFKEKQAQADGTKPSPADQ---ARAESLKGEGNQAILSKDYHKAEQLYSEAIALAPTGVSSHVYYCNRAAARSHLGDHMGAVADAEKATELNPAYSKAYSRLGYAHFYLQHYPEARDAYTRAVELDPSNAANKEYLSKAQAKIAEEEAAGGAEGGRGGGGGGGMEDMFSSMAGAGGGGMPDFSQLAGLMGGLGGGGGGEGGGGGNPLAAMLKNPAMMQMAQSMMQAPGMKERAAQMMSDPNAMAKMSQMMGGIMGGSGGGGGG 333
            K  +L  IF+ G+++L L T+ A  A    + ++P L+Q++LAK+  KGFF G+  G+  Y D + KA  KFKEK   +D   PS + +   A+AE+LK  GN A+ +KDY KAEQLYSEAIAL+P G +SH+Y  N AAA+ +L  +   V + EK+ ELNP Y KAYSRLG A+  L+    A DA++R +E+DP+N   K  L  A+ + +  +                     ++   AGGGGMPD S LAG+MGG GGG GG        LA ++ NPAM QMA  MMQ P M   A  MM DP A+++M       MG  GGGGGG
Sbjct:   60 KNHSLLDIFTAGSKSLQLVTLSAPAAEDPVIAANPGLWQKWLAKLEAKGFFNGVSPGTSEYDDLYKKALSKFKEKFG-SDKAPPSLSKEEKEAKAETLKASGNAALSAKDYVKAEQLYSEAIALSPAGPNSHIYLSNLAAAQMYLEKYDDVVDNCEKSIELNPKYVKAYSRLGAAYLQLEDIDLAIDAFSRGLEVDPTNDMCKSGLHDARNRQSHLQTR-------------------NAPPPAGGGGMPDLSALAGMMGGAGGGAGG--------LAGLMSNPAMQQMAAQMMQNPQMMAMAQNMMKDPAALSRM-------MGSMGGGGGG 357
The following BLAST results are available for this feature:
BLAST of NO24G02170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009822167.17.100e-4643.24hypothetical protein H257_00930 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02170NO24G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02170.2NO24G02170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02170.2.cds1NO24G02170.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds2NO24G02170.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds3NO24G02170.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds4NO24G02170.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds5NO24G02170.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds6NO24G02170.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds7NO24G02170.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds8NO24G02170.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds9NO24G02170.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02170.2.cds10NO24G02170.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02170.2 ID=NO24G02170.2|Name=NO24G02170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp
GTGCTGAGGAGTGGGCCATGGGTGCCTCCGACAACGCACTCGCTGCCCAG
CTGTCTCTTGCTCACATCCCACTATGCCCACAGTGTCACCATCCGTGCCC
TGCCTCGTCCCTTGCCGACCTCGTGGCATCTTTGGCTTCATTTAAACGCC
GTGCCATCGCCACCCATCGGCTTTCGTTGTTGTACAGTGCACTGCGGCCA
TCTTTATAAAGCCCACCAAAGGGCTTGCGCCACCGCCCTCTCGAGCACGG
GCAACGGCTAAACTTCCTTCGTCGCACCATCTCATGCCCTTCCCCACCCC
CTGCATCCCTCGACATATCACGTAGCACCAAGCACAAAAACAGTAGCCAC
ACAGTACGACCATGAGCGGCGTGGACGAGGAGAAAACGTTGGCTTTTGCC
ATCCTCGAGCATTTGCAGGGCAGCGTCGCGGGTGAGGGAGTGGAGGAGGC
TCTTGCCACGCTGAGGTAAGAGGTGGGAGGGACAAGAGGAAAGGGAGAAA
TGAAGGGAGAGGAAGGGGGCATGAAGTGTGTCCTCTGATAACTCGACGGA
GCGTTAAAAGGGAAGAGTGGAGGAGAGGGAGGCAGGGGGAAGGGATGGTG
GTTCACGGGCTGGCGCATAACAGCAGATGCAGGGGAGGAATAAATATCGC
CTTCAGTGTTTGTCGGTGCATCAAATTTGCCTATCTCTAGTTCCATCTAT
TGCATGTTATATTTATACTTTACCGCCTCCCTTTCCATTATTCCATCGTC
CATCCTGTCGTCAGGGAGGGTTAGGAACTGTCGATTTCTAGAAACTGTTC
CGCTATTTCGACTTCCCCCTCCCTCCCTTCTCCCCTCCCCCCTCCCCTCC
TCCGCCTTCATCTGATACTCACAGCACCGCTTTGGGCGTGGATTTATCCT
CGGGGAATGACATGTCGGCCTATTCGTACAAGCCTGCTACTCTCCCTCAG
ATTTTCTCCAAGGGGGCTGAGGCGCTCAATCTCTCCACCGTCGGCGCCGA
GATGGCTGCTCTAAACTCGGACCCGCTCTTCCAGCAATACCTGGCCAAGA
TCACCGAGAAGGGTTTCTTCAAAGGCTTGGAAGAGGGTAGCAAGGCCTAC
CTCGATCGCTTCCTGAAGGCCGCGGGGAAGTTCAAGGAAAAGCAGGCTCA
GGCCGATGGAACCAAGCCCTCCCCCGCCGACCAAGCCCGGGCCGAGTCTC
TGAAGGGGGAGGGGAATCAAGCCATCCTCTCCAAAGATTACCACAAGGCC
GAGCAGCTTTATTCCGAAGCCATCGCTCTTGCCCCCACCGGCGTTTCTTC
CCATGTCTACTATTGCAACCGAGCTGCAGCACGCTCCCACTTGGGGGACC
ATATGGGAGCCGTGGCAGACGCCGAGAAGGCGACGGAGCTCAACCCTGCC
TATAGCAAGGCCTACTCCCGGCTGGGGTACGCTCATTTCTACCTCCAACA
CTACCCGGAAGCTAGGGACGCCTACACCCGTGCCGTGGAGCTCGATCCTT
CCAACGCAGCCAACAAGGAGTATCTTTCCAAGGCCCAAGCAAAAATTGCC
GAGGAAGAGGCCGCGGGCGGGGCTGAAGGAGGAAGAGGAGGAGGAGGAGG
AGGAGGGATGGAGGACATGTTCTCGAGCATGGCTGGTGCCGGTGGCGGCG
GTATGCCTGATTTCTCGCAGCTCGCAGGACTGATGGGAGGGCTCGGAGGA
GGGGGAGGAGGGGAAGGAGGAGGAGGAGGAAATCCCTTAGCGGCCATGCT
GAAGAATCCGGCGATGATGCAGATGGCGCAATCCATGATGCAAGCTCCGG
GTATGAAGGAGCGGGCAGCGCAGATGATGAGCGACCCTAATGCCATGGCG
AAGATGTCGCAAATGATGGGAGGCATCATGGGTGGTAGTGGTGGTGGTGG
AGGAGGGGAGGGAGGAGGAGGAGGGGAGGAGGAGGGATGCCGGACCTGGC
AAGTTTGATGAGCGCGTTCGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAG
GAGAGGGCGGAGGACCGTCGTCGGGGTGGGATAGTGGGGAGGATGGGGAG
AAGGGGGGAAGGGGGAGAGCAGTGAGCAAATTTAAGGAAGTGGGTGAAGG
GCCGGGGAGGAGCGGAGATAGAAAAAAGGAAGGCGGGAAAAGAAAGGAGA
AGGGGCAAGGAAAGAAGCCGTCTTGCAGGTGGAAGAAAAAGAAGTAGGAC
GAAGGGGTGGAGGAGGAGGAGAATGAAAGGAGGAGGACGATGACGAAGAA
AAAAGAAAAAACCGAAGACGATGTCCCAGGACTCCATCCACCCTGCGATC
CTCCGG
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protein sequence of NO24G02170.2

>NO24G02170.2-protein ID=NO24G02170.2-protein|Name=NO24G02170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MSAYSYKPATLPQIFSKGAEALNLSTVGAEMAALNSDPLFQQYLAKITEK
GFFKGLEEGSKAYLDRFLKAAGKFKEKQAQADGTKPSPADQARAESLKGE
GNQAILSKDYHKAEQLYSEAIALAPTGVSSHVYYCNRAAARSHLGDHMGA
VADAEKATELNPAYSKAYSRLGYAHFYLQHYPEARDAYTRAVELDPSNAA
NKEYLSKAQAKIAEEEAAGGAEGGRGGGGGGGMEDMFSSMAGAGGGGMPD
FSQLAGLMGGLGGGGGGEGGGGGNPLAAMLKNPAMMQMAQSMMQAPGMKE
RAAQMMSDPNAMAKMSQMMGGIMGGSGGGGGGEGGGGGEEEGCRTWQV*
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mRNA from alignment at chr24:577781..581528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02170.2 ID=NO24G02170.2|Name=NO24G02170.2|organism=Nannochloropsis oceanica|type=mRNA|length=3748bp|location=Sequence derived from alignment at chr24:577781..581528- (Nannochloropsis oceanica)
GTGCTGAGGAGTGGGCCATGGGTGCCTCCGACAACGCACTCGCTGCCCAG
CTGTCTCTTGCTCACATCCCACTATGCCCACAGTGTCACCATCCGTGCCC
TGCCTCGTCCCTTGCCGACCTCGTGGCATCTTTGGCTTCATTTAAACGCC
GTGCCATCGCCACCCATCGGCTTTCGTTGTTGTACAGTGCACTGCGGCCA
TCTTTATAAAGCCCACCAAAGGGCTTGCGCCACCGCCCTCTCGAGCACGG
GCAACGGCTAAACTTCCTTCGTCGCACCATCTCATGCCCTTCCCCACCCC
CTGCATCCCTCGACATATCACGTAGCACCAAGCACAAAAACAGTAGCCAC
ACAGTACGACCATGAGCGGCGTGGACGAGGAGAAAACGTTGGCTTTTGCC
ATCCTCGAGCATTTGCAGGGCAGCGTCGCGGGTGAGGGAGTGGAGGAGGC
TCTTGCCACGCTGAGGTAAGAGGTGGGAGGGACAAGAGGAAAGGGAGAAA
TGAAGGGAGAGGAAGGGGGCATGAAGTGTGTCCTCTGATAACTCGACGGA
GCGTTAAAAGGGAAGAGTGGAGGAGAGGGAGGCAGGGGGAAGGGATGGTG
GTTCACGGGCTGGCGCATAACAGCAGATGCAGGGGAGGAATAAATATCGC
CTTCAGTGTTTGTCGGTGCATCAAATTTGCCTATCTCTAGTTCCATCTAT
TGCATGTTATATTTATACTTTACCGCCTCCCTTTCCATTATTCCATCGTC
CATCCTGTCGTCAGGGAGGGTTAGGAACTGTCGATTTCTAGAAACTGTTC
CGCTATTTCGACTTCCCCCTCCCTCCCTTCTCCCCTCCCCCCTCCCCTCC
TCCGCCTTCATCTGATACTCACAGCACCGCTTTGGGCGTGGATTTATCCT
CGGGGAATGACATGTCGGCCTATTCGTACAAGCCTGCTACTCTCCCTCAG
ATTTTCTCCAAGGGGGCTGAGGCGCTCAATGTGAGGAATGAGAGAGAGGG
AGGGAGGGAGGAAAAGAGAAAGGGTGGGAAATAGGGAAGGTGGAAACGAA
ATTAGGTAGAGTAGGGAAATGGGAGACCATAGGAGGTGTTATGGTTGGTA
GTGGTTTCCCTTCCTCGCCAAAGCAACCCACCTGCTTTATCGTTTGCTCC
TCCCTCACTTCCTCCCTGCTTCCCTCCTTTCTTCCCTCCCTTAGCTCTCC
ACCGTCGGCGCCGAGATGGCTGCTCTAAACTCGGACCCGCTCTTCCAGCA
ATACCTGGCCAAGATCACCGAGAAGGGTTTCTTCAAAGGTAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAAGGTTCGAGGGTGCGGTCAGAAACCGCTCAG
GCCGCTTTCGTTTCCATTATTATCCCCTCCTCCCTTCCTCTCTCCAGGCT
TGGAAGAGGGTAGCAAGGCCTACCTCGATCGCTTCCTGAAGGCCGCGGGG
AAGTTCAAGGAAAAGCAGGCTCAGGCCGATGGAACCAAGGTAAGAAGCTG
CCCTCCCTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCTCCTTC
CTCTCACCCACCCTTCCCCCTCCTTGCCTCCCACCTCCCAGCCCTCCCCC
GCCGACCAAGCCCGGGCCGAGTCTCTGAAGGGGGAGGGGAATCAAGCCAT
CCTCTCCAAAGATTACCACAAGGCCGAGCAGCTTTATTCCGAAGCCATCG
CTCTTGCCCCCACCGGCGTTTCTTCCCATGTCTACTATTGCAACCGAGCT
GCAGCACGGTACGTTCCCTCCCTCCCTTCCCCCCCCCTCCCTCGACGACC
ATCCTCGGCTTTTTATCCCCTCCCCCTCTTGCAAACTCCTGCCCTCCCTC
CTGCCCTCCGTCAGCTCTCACTCAGGATATCATCCCGTCGTGGCCCACCA
ACCAACTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGCTCCCACTTGGGGGACCATATGGGAGCCGTGGCAGACGCCGAGAAGG
CGACGGAGCTCAACCCTGCCTATAGCAAGTAAGGAGAGAGGGAGGGAGGA
AAGGACGTAGAACAAAAAAGGATCAAGAGGGGAAAGAAAAAGGCTCACAA
CTCCCCTCCCTCCCTTTCTCCCTTTCTCCCTCCCTCTCCCCCTCAGGGCC
TACTCCCGGCTGGGGTACGCTCATTTCTACCTCCAACACTACCCGGAAGC
TAGGGACGCCTACACCCGTGCCGTGGAGCTCGATCCTTCCAACGCAGGTA
GCTGTCCTCCCTCACTCCCTCCTTCCCTTCCTTTCTACTTCCCGATTAGC
CAGGATATTGAGGCCGAGGGCTTAAATGAAAACTGCTCCAAAAGAATCAC
GTTTCACAACTCTCCCTCCCTCCTTGATCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTTCCCTCCCAGCCAACAAGGAGTATCTTTCCAAGGCCCAAGCAA
AAATTGCCGAGGAAGAGGCCGCGGGCGGGGCTGAAGGAGGAAGAGGAGGA
GGAGGAGGAGGAGGGATGGAGGTGAGAAGAGGATGGGAAGGGGGATGGAG
GAGGGAGAGGGGGAAGGAGGGCGAGCTTACTTCCTTGCGGTGCCGGGATG
CTATAATGCCGATATGGATATCTTCATAATAACAATTTACTAAATCTTTA
ATTTTTAAATTGCGGATTAATTATTCATGTATATAATAAATAACCCAGGA
CATGTTCTCGAGCATGGCTGGTGCCGGTGGCGGCGGTATGCCTGATTTCT
CGCAGCTCGCAGGACTGATGGGAGGGCTCGGAGGAGGGGGAGGAGGGGAA
GGAGGAGGAGGAGGAAATCCCTTAGCGGCCATGCTGAAGAATCCGGCGAT
GATGCAGATGTAGGTGGATGGAGGGATGGAGAAAGAGTGTACCGGCGGGC
GGATGAATCTTTCCATGTCGATGACAATGACATTCGCCTTCTTGATTTTT
AACTCTTCCTCCTCTTCTTTCCTTTCCGTTCTCTCTCTCTCCCTCCCTCC
CTCCCTCTCTCGCCCTCTCCCTTCTACCCAGGGCGCAATCCATGATGCAA
GCTCCGGGTATGAAGGAGCGGGCAGCGCAGATGATGAGCGACCCTAATGC
CATGGCGAAGGTGAGGGAGGAGAGGAGGGAGGGAGGGAGGGAGGGAGAGA
GGGAAAGGACCGTCCTGTTTCTTCGACACGCGTACTTTCCACACATTTAT
CTTTGTTGGTATCTTATAATCTAACGGCCAACCACAAACACACAGATGTC
GCAAATGATGGGAGGCATCATGGGTGGTAGTGGTGGTGGTGGAGGAGGGG
AGGGAGGAGGAGGAGGGGAGGAGGAGGGATGCCGGACCTGGCAAGTTTGA
TGAGCGCGTTCGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGAGGGC
GGAGGACCGTCGTCGGGGTGGGATAGTGGGGAGGATGGGGAGAAGGGGGG
AAGGGGGAGAGCAGTGAGCAAATTTAAGGAAGTGGGTGAAGGGCCGGGGA
GGAGCGGAGATAGAAAAAAGGAAGGCGGGAAAAGAAAGGAGAAGGGGCAA
GGAAAGAAGCCGTCTTGCAGGTGGAAGAAAAAGAAGTAGGACGAAGGGGT
GGAGGAGGAGGAGAATGAAAGGAGGAGGACGATGACGAAGAAAAAAGAAA
AAACCGAAGACGATGTCCCAGGACTCCATCCACCCTGCGATCCTCCGG
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Coding sequence (CDS) from alignment at chr24:577781..581528-

>NO24G02170.2 ID=NO24G02170.2|Name=NO24G02170.2|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr24:577781..581528- (Nannochloropsis oceanica)
ATGTCGGCCTATTCGTACAAGCCTGCTACTCTCCCTCAGATTTTCTCCAA
GGGGGCTGAGGCGCTCAATCTCTCCACCGTCGGCGCCGAGATGGCTGCTC
TAAACTCGGACCCGCTCTTCCAGCAATACCTGGCCAAGATCACCGAGAAG
GGTTTCTTCAAAGGCTTGGAAGAGGGTAGCAAGGCCTACCTCGATCGCTT
CCTGAAGGCCGCGGGGAAGTTCAAGGAAAAGCAGGCTCAGGCCGATGGAA
CCAAGCCCTCCCCCGCCGACCAAGCCCGGGCCGAGTCTCTGAAGGGGGAG
GGGAATCAAGCCATCCTCTCCAAAGATTACCACAAGGCCGAGCAGCTTTA
TTCCGAAGCCATCGCTCTTGCCCCCACCGGCGTTTCTTCCCATGTCTACT
ATTGCAACCGAGCTGCAGCACGCTCCCACTTGGGGGACCATATGGGAGCC
GTGGCAGACGCCGAGAAGGCGACGGAGCTCAACCCTGCCTATAGCAAGGC
CTACTCCCGGCTGGGGTACGCTCATTTCTACCTCCAACACTACCCGGAAG
CTAGGGACGCCTACACCCGTGCCGTGGAGCTCGATCCTTCCAACGCAGCC
AACAAGGAGTATCTTTCCAAGGCCCAAGCAAAAATTGCCGAGGAAGAGGC
CGCGGGCGGGGCTGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGATGG
AGGACATGTTCTCGAGCATGGCTGGTGCCGGTGGCGGCGGTATGCCTGAT
TTCTCGCAGCTCGCAGGACTGATGGGAGGGCTCGGAGGAGGGGGAGGAGG
GGAAGGAGGAGGAGGAGGAAATCCCTTAGCGGCCATGCTGAAGAATCCGG
CGATGATGCAGATGGCGCAATCCATGATGCAAGCTCCGGGTATGAAGGAG
CGGGCAGCGCAGATGATGAGCGACCCTAATGCCATGGCGAAGATGTCGCA
AATGATGGGAGGCATCATGGGTGGTAGTGGTGGTGGTGGAGGAGGGGAGG
GAGGAGGAGGAGGGGAGGAGGAGGGATGCCGGACCTGGCAAGTTTGA
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Synonyms
Publications