NO24G02140.1, NO24G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02140.1
Unique NameNO24G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2609
Alignment locationchr24:571065..574453 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:571065..574453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02140.1 vs.
Match: EWM24426.1 (asf sf2-like pre-mrna splicing factor srp31, partial [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 2.400e-53
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0 
Query:    1 MSCRIYVGNLPMDVRERELDDLFYKYGRIRGIDIKRPNRPPAYAFVAFEDPRDAKDAVYYRDNYDFDGGRIRVELANEAPRRRDGGFGGGRGGGRSRTDFRLEVTDLPDRTSWQDLK 118
            MSCRIYVGNLPMDVRER+LDDLFYKYGRIRGIDIKRP+RPPAYAFVAFEDPRDAKDAV+YRDNYDFDGGRIRVELANE PRRRD     G GGGR+RTDFRLEV+DLPDRTSWQDLK
Sbjct:    1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRD---DRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
The following BLAST results are available for this feature:
BLAST of NO24G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24426.12.400e-5389.74asf sf2-like pre-mrna splicing factor srp31, parti... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02140NO24G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02140.1NO24G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02140.1.cds1NO24G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02140.1.cds2NO24G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02140.1.cds3NO24G02140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02140.1.cds4NO24G02140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02140.1.cds5NO24G02140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02140.1.cds6NO24G02140.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02140.1 ID=NO24G02140.1|Name=NO24G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2609bp
TTTATTTTCTTGAACTATCCCTTACTCTCGGCATGGAGATATGCTTCCCT
TGGCAAGAATCAACTCAGCTGAATTTGGGGGAGGAGGGGAATCAAATTGA
AGGATGAGAAGTACTCTCTTGGAAAGTCATGCAGAGAAGAGCTGCACTGA
TATAAAAATCAGTACACTCCAACGCCACGTCAAAATTGCGCTGCATTTCC
CCTGCGTTGTCGCTTGTGTGTGTACACGAGGAGGTAGGAGGAGGAAGATG
AGACACACACAACCCTTTGGCCTGTTCCTGAGCATCTTTGCGCTTTCGCT
CGATTTTATAAACGCATATGTGGATGTGTACAATGCAATTTTCTCCCTCT
CTCTGTCAGCCTTTCAGATTTGGTCGGTGCGAGCGTGCATGCGCAACAAG
GAGGGTTCCTTCCTTCGAGAAGCAGCCAACAGATCCCACCCGGAGCTATA
TGTATCAATGATTGTCTCCTTGTCTTGCCGATATTCTGCCGGGTAGAAAA
TACGGCCTTGGGGCTACAGGTGTGACACAAGACGCTAAGCCTTGTCTTAA
AATGCTCTGACTGGTCTAAGCAACGCAAGGCTCCGCCTCTGTAGAAGCGC
TCTCACCGAAGAAGGGGGACACGCGTTGCTACAGCCAGCGAAAGCCATCC
TCTTCACTCCTGACCACACACACACACCCCGAAATCCCTCGCACAGGTTC
ATATCACCCGCAACAACAACAACAACACACGCACGACAACCATGTCCTGT
CGCATCTACGTTGGCAATTTGCCTATGGACGTTCGAGAGCGAGAGCTTGA
CGATCTTTTTTACAAGTACGGGCGCATCCGTGGCATTGACATTAAACGGC
CTAATCGCCCCCCCGCCTATGCCTTCGTCGCTTTCGAGGATCCTCGGGAC
GCTAAGGATGCTGTCTACTACCGAGACAATTACGACTTTGACGGGGGCCG
TATCCGCGTGGAGCTGGCCAATGAGGCCCCTCGTCGACGGGATGGAGGCT
TCGGCGGTGGGCGTGGTGGAGGGCGCTCTCGCACTGACTTCCGGCTGGAG
GTGACGGATCTCCCCGACCGGACATCTTGGCAAGACCTCAAGGATTACTT
CAAGGCCGTGGGGGAGGTGCTGTACGCGGACGTGAACAGGGACGGGGAGG
GTGTGGTGGAGTTTGCAAATAAAGATGACATGTTCGCTGCCAAGCGGAAG
CTCGATGGCACGGTTTTCAAGAACCCTTTTGACTCTCGCGAGATCCGGGT
CAGGTTGCCCAAGGGGAGCACTCTCCGATCCTCCTCCCGCAGCAAGAGCC
GGAGCCACAGTCGATCGCGCTCCCCCCCTTCCTCCCGCCGTCGCTCCCGC
TCACCCCTCTCTCGATCACGATCTCCGCCTTCCAAGAAAAAGGGGGGAAG
GGGCACAGACGACGAGGAGGAGGGAAGAGGGGGGAGGGAAAGAAGGCCGG
GAGGAAGATGAGCGAGGCGTCGGCGGGGGATAGCAGCCCGGAGAGGAGCC
CGAGGAAGGGGAAGAAAGAGGAGGAGGAGGAGGAGGGAGGGCCCAGGGAT
GAGATTTAAGTGAGAAGGAGGAGGATCAGGACGCAGAGAGAAAGGAGCAG
GGGGTAAGGCGAGTAAGAAAGAGAAAAAGAGAGCGTCAAAGGGAGAGAAT
GAGAAGGCTGAAGAGAGAGAGAGAGATTGAGTGTGTGTCAAAAAGAGGGA
GGGAGAGGGGGGGGGAAATGAGTCAGAGCGGAAGGTTGGAAAGAGGGAGG
GCGGCGGGAATTCGGAAGTGTGTGTCTTCCATCATTCCGTCTAATTCTAC
TTAATTATTACTTTCTCATAATAAGATATAGTCCGGTTACCTTCCTCATT
TCCACTTACACCCCTCCCCCACTTTTTCCTTTTCCTTGAAAGGTGTATTC
TAGAGGGGTAGATCGTGTGGGATGTGGGTGTGTGGGTGCCTAAGGCTTAG
CCGTGGCTACTAGATGCTGGCTATATGCGTTGTGCGTGCGTGGGAAGGTG
GTGAAGACCTGCGGCTTGGGGGAGGGTTTGACGGTGATGGCAAGCGGGGG
GGGCTTGATCATGACATGAAGGAAGGGAGCGAGGGAGCGAGGGAGCGAGG
GAGCGAGGGAGAGACGCCTGGACTGATGAGAGTGTTGGGCTGCACACGAG
AGCGTGAGAGTGGGAATGAGTCGCTTCAACCTTTCGGTGGAGGATACCAC
TCAGGTAACATGTTGCTTGTCTGCTCTCCCTTCCTCCCTCCCTTCTTCCC
TCACTTTGTCGACCTCGTCAGTCTTGTTCTCCAAAACTCTCCTCCTCCTT
CCCTTTGTCCGAGTCCTCCCTTCTACTTAGTTGGCATTTGGGGTGGGCTT
GGTCGGCCAGCCAGCAGCGAGAGAGGAAGGGAAGGAGGACGGGTTCGAGG
AAGGGACAAGCATAAAGAAGAAGACCAGGCGCTGACGGAAGGGAAGGGAG
AAGGGAGGGAGGGAGGGAGCAGTCCGCTGCTTCCTGGTGTTTTTGCTTGG
GGCAGTGCGTGGGTGCCCGGTTAGTGGCAGGGTGGGTGAGGGAGAGGAGG
GGGCCTACCCCTCCTCCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTTCTT
CTCTCTTTC
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protein sequence of NO24G02140.1

>NO24G02140.1-protein ID=NO24G02140.1-protein|Name=NO24G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSCRIYVGNLPMDVRERELDDLFYKYGRIRGIDIKRPNRPPAYAFVAFED
PRDAKDAVYYRDNYDFDGGRIRVELANEAPRRRDGGFGGGRGGGRSRTDF
RLEVTDLPDRTSWQDLKDYFKAVGEVLYADVNRDGEGVVEFANKDDMFAA
KRKLDGTVFKNPFDSREIRVRLPKGSTLRSSSRSKSRSHSRSRSPPSSRR
RSRSPLSRSRSPPSKKKGGRGTDDEEEGRGGRERRPGGR*
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mRNA from alignment at chr24:571065..574453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02140.1 ID=NO24G02140.1|Name=NO24G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3389bp|location=Sequence derived from alignment at chr24:571065..574453+ (Nannochloropsis oceanica)
TTTATTTTCTTGAACTATCCCTTACTCTCGGCATGGAGATATGCTTCCCT
TGGCAAGAATCAACTCAGCTGAATTTGGGGGAGGAGGGGAATCAAATTGA
AGGATGAGAAGTACTCTCTTGGAAAGTCATGCAGAGAAGAGCTGCACTGA
TATAAAAATCAGTACACTCCAACGCCACGTCAAAATTGCGCTGCATTTCC
CCTGCGTTGTCGCTTGTGTGTGTACACGAGGAGGTAGGAGGAGGAAGATG
AGACACACACAACCCTTTGGCCTGTTCCTGAGCATCTTTGCGCTTTCGCT
CGATTTTATAAACGCATATGTGGATGTGTACAATGCAATTTTCTCCCTCT
CTCTGTCAGCCTTTCAGATTTGGTCGGTGCGAGCGTGCATGCGCAACAAG
GAGGGTTCCTTCCTTCGAGAAGCAGCCAACAGATCCCACCCGGAGCTATA
TGTATCAATGATTGTCTCCTTGTCTTGCCGATATTCTGCCGGGTAGAAAA
TACGGCCTTGGGGCTACAGGTGTGACACAAGACGCTAAGCCTTGTCTTAA
AATGCTCTGACTGGTCTAAGCAACGCAAGGCTCCGCCTCTGTAGAAGCGC
TCTCACCGAAGAAGGGGGACACGCGTTGCTACAGCCAGCGAAAGCCATCC
TCTTCACTCCTGACCACACACACACACCCCGAAATCCCTCGCACAGGTTC
ATATCACCCGCAACAACAACAACAACACACGCACGACAACCATGTCCTGT
CGCATCTACGTTGGTACGTTTCCTCCTTCCCTCCACTCTTTCCTCTTAGT
TCCCTCCCTCATCACCTTCCCTCTGCAAGACCCGACTTCCCCTCTCATCT
TTCCATCCCTCTATCCTATTCTACCTCCAGGCAATTTGCCTATGGACGTT
CGAGAGCGAGAGCTTGACGATCTTTTTTACAAGTACGGGCGCATCCGTGG
CATTGACATTAAACGGCCTAATCGGTATTCATGAAGGAAGAGAGGGGCGA
GGGAGGGGAAGTAAGGTCCGATGAACGCAGCCATTATTCTGGATTTTTTA
CATCCATCTCAGTCTGGCAATTAATGGACTCATCACAGGCCATGCATGTC
TTCTTGGTCTGACAAACCTACCATCCATCCCCCCTCCCCTTCCTAGCCCC
CCCGCCTATGCCTTCGTCGCTTTCGAGGATCCTCGGGACGCTAAGGATGC
TGTCTACTACCGAGACAATTACGACTTTGACGGGGGCCGTATCCGCGTGG
AGCTGGCCAATGAGGCCCCTCGTCGACGGGATGGAGGTATGCCTTCCTTC
CATCCTTCCCTCCCTCCCTCCCTCCCTCCCTCTTACCGTGGGGATGGCCC
GCTTTACTCATCCTTCTCAATTATTCCCATCCCTCCCTCCCTGTCTGTCT
GTTGGTGGCAGGCTTCGGCGGTGGGCGTGGTGGAGGGCGCTCTCGCACTG
ACTTCCGGCTGGAGGTGACGGATCTCCCCGACCGGACATCTTGGCAAGAC
CTCAAGGTACCTCCCTCCTTTCCTCCCTCCCTTCCTCCCTTCTTCCCTCC
CTCCCTCTCTCCCTCCCTTCTTCCCTTCTATGGATGAGGTGTTCCACGCC
GACGTGAAGAGGGACGCGGCGACTGTCTCCACACACCTTCCCATTCCTTC
CGCCCTCCCTCCCTCTTACACCTGCCCCCCTTTCCCCTTCTCTCCTTCCC
TCCCTCTTACACCTCCCCGCCCTCCTCCCTCTCCAGGATTACTTCAAGGC
CGTGGGGGAGGTGCTGTACGCGGACGTGAACAGGGACGGGGAGGGTGTGG
TGGAGTTTGCAAATAAAGATGACATGTTCGCTGCCAAGCGGAAGCTCGAT
GGCACGGTTTTCAAGAACCCTTTTGACTCTCGCGAGGTACGCCCTCGCTC
CCTCCCTCCCTCCCTTCCCCCCAGCCTCCCTCCCTCCCTCCTTCCAGCCC
TCTTTCTGCAGCACACGCCAGAGCCCCAACACCTTTACCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCAGATCCGGGTCAGGTTGCCCAAGGGGAGCA
CTCTCCGATCCTCCTCCCGCAGCAAGAGCCGGAGCCACAGTCGATCGCGC
TCCCCCCCTTCCTCCCGCCGTCGCTCCCGCTCACCCCTCTCTCGATCACG
ATCTCCGCCTTCCAAGAAAAAGGGGGGAAGGGGCACAGACGACGAGGAGG
AGGGAAGAGGGGGGAGGGAAAGAAGGCCGGGAGGAAGATGAGCGAGGCGT
CGGCGGGGGATAGCAGCCCGGAGAGGAGCCCGAGGAAGGGGAAGAAAGAG
GAGGAGGAGGAGGAGGGAGGGCCCAGGGATGAGATTTAAGTGAGAAGGAG
GAGGATCAGGACGCAGAGAGAAAGGAGCAGGGGGTAAGGCGAGTAAGAAA
GAGAAAAAGAGAGCGTCAAAGGGAGAGAATGAGAAGGCTGAAGAGAGAGA
GAGAGATTGAGTGTGTGTCAAAAAGAGGGAGGGAGAGGGGGGGGGAAATG
AGTCAGAGCGGAAGGTTGGAAAGAGGGAGGGCGGCGGGAATTCGGAAGTG
TGTGTCTTCCATCATTCCGTCTAATTCTACTTAATTATTACTTTCTCATA
ATAAGATATAGTCCGGTTACCTTCCTCATTTCCACTTACACCCCTCCCCC
ACTTTTTCCTTTTCCTTGAAAGGTGTATTCTAGAGGGGTAGATCGTGTGG
GATGTGGGTGTGTGGGTGCCTAAGGCTTAGCCGTGGCTACTAGATGCTGG
CTATATGCGTTGTGCGTGCGTGGGAAGGTGGTGAAGACCTGCGGCTTGGG
GGAGGGTTTGACGGTGATGGCAAGCGGGGGGGGCTTGATCATGACATGAA
GGAAGGGAGCGAGGGAGCGAGGGAGCGAGGGAGCGAGGGAGAGACGCCTG
GACTGATGAGAGTGTTGGGCTGCACACGAGAGCGTGAGAGTGGGAATGAG
TCGCTTCAACCTTTCGGTGGAGGATACCACTCAGGTAACATGTTGCTTGT
CTGCTCTCCCTTCCTCCCTCCCTTCTTCCCTCACTTTGTCGACCTCGTCA
GTCTTGTTCTCCAAAACTCTCCTCCTCCTTCCCTTTGTCCGAGTCCTCCC
TTCTACTTAGTTGGCATTTGGGGTGGGCTTGGTCGGCCAGCCAGCAGCGA
GAGAGGAAGGGAAGGAGGACGGGTTCGAGGAAGGGACAAGCATAAAGAAG
AAGACCAGGCGCTGACGGAAGGGAAGGGAGAAGGGAGGGAGGGAGGGAGC
AGTCCGCTGCTTCCTGGTGTTTTTGCTTGGGGCAGTGCGTGGGTGCCCGG
TTAGTGGCAGGGTGGGTGAGGGAGAGGAGGGGGCCTACCCCTCCTCCTTC
TTCTTCTTTTTCTTCTTCTTCTTCTTTCTTCTCTCTTTC
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Coding sequence (CDS) from alignment at chr24:571065..574453+

>NO24G02140.1 ID=NO24G02140.1|Name=NO24G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr24:571065..574453+ (Nannochloropsis oceanica)
ATGTCCTGTCGCATCTACGTTGGCAATTTGCCTATGGACGTTCGAGAGCG
AGAGCTTGACGATCTTTTTTACAAGTACGGGCGCATCCGTGGCATTGACA
TTAAACGGCCTAATCGCCCCCCCGCCTATGCCTTCGTCGCTTTCGAGGAT
CCTCGGGACGCTAAGGATGCTGTCTACTACCGAGACAATTACGACTTTGA
CGGGGGCCGTATCCGCGTGGAGCTGGCCAATGAGGCCCCTCGTCGACGGG
ATGGAGGCTTCGGCGGTGGGCGTGGTGGAGGGCGCTCTCGCACTGACTTC
CGGCTGGAGGTGACGGATCTCCCCGACCGGACATCTTGGCAAGACCTCAA
GGATTACTTCAAGGCCGTGGGGGAGGTGCTGTACGCGGACGTGAACAGGG
ACGGGGAGGGTGTGGTGGAGTTTGCAAATAAAGATGACATGTTCGCTGCC
AAGCGGAAGCTCGATGGCACGGTTTTCAAGAACCCTTTTGACTCTCGCGA
GATCCGGGTCAGGTTGCCCAAGGGGAGCACTCTCCGATCCTCCTCCCGCA
GCAAGAGCCGGAGCCACAGTCGATCGCGCTCCCCCCCTTCCTCCCGCCGT
CGCTCCCGCTCACCCCTCTCTCGATCACGATCTCCGCCTTCCAAGAAAAA
GGGGGGAAGGGGCACAGACGACGAGGAGGAGGGAAGAGGGGGGAGGGAAA
GAAGGCCGGGAGGAAGATGA
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Synonyms
Publications