NO24G02130.1, NO24G02130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G02130.1
Unique Name	NO24G02130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2082
Alignment location	chr24:567095..569821 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:567095..569821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO24G02130.1 vs.
Match: EWM24427.1 (putative e3 ubiquitin-protein ligase makorin-2, partial [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 1.100e-34
Identity = 77/111 (69.37%), Postives = 86/111 (77.48%), Query Frame = 0

Query:  586 RSC---PCCKQVSHFVIPHTRLVTDPLRKENLIQAYKDQMKQKRCRYFVYQRGNPEASLQSCPFGSSCFYAHLKEDGTPLTPPSLRTRMGEEGRVEVVHEVKLSDFL-EGR 693
            R+C   PC  +      PHT  VTDP RK+NL++AYK QM +K CRYF YQ G+ EAS QSCPFG+SCFYAHLK DGTPLTPP LRTRMGEEGRVEVV EVKLSDFL +GR
Sbjct:    8 RTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGR 118

The following BLAST results are available for this feature:

BLAST of NO24G02130.1 vs.

BLAST of NO24G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24427.1	1.100e-34	69.37	putative e3 ubiquitin-protein ligase makorin-2, pa...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G02130	NO24G02130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02130.1	NO24G02130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02130.1.cds1	NO24G02130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02130.1.cds2	NO24G02130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02130.1.cds3	NO24G02130.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02130.1.cds4	NO24G02130.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02130.1.cds5	NO24G02130.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02130.1.cds6	NO24G02130.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:567095..569821+
coding sequence from alignment at chr24:567095..569821+

mRNA sequence

>NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp
ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT
CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC
ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC
CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG
GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA
AGGGGCGGCAATCGGAGGGCTTCTAGACTTGTCACGGCCCTCTTGGTTTT
TGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGCCGA
ACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAAGGG
AGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTCCGG
CTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTGCCC
CCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTATCT
TCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGACGA
TCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAGGTT
GCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCTGCC
CACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTACACA
CCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTCGCC
GCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGGACG
CTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACAAAC
ACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAACAC
CTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCCGGG
AGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCACTGG
CAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAAGGG
AGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGTAGG
GACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCTAAT
TCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTCGTC
CTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGGGCG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAAAGC
GGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTCTGAACGAGGGAG
CAGGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGG
AGAGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGCCATCACC
GGTCGTTTCGGATTGCTGACGCACTGTGCTCACTCGTTTTGTTTGTCCTG
CATCCGGACATGGCGACAGCAGCACACGGATGGGAGCCAAGACACGGCAA
ACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTCGTCATCCCA
CACACCCGCCTCGTCACCGACCCCCTTCGCAAGGAGAATCTCATCCAGGC
TTACAAGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAAC
GAGGTAATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGC
TTTTATGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCT
GAGGACGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGA
AGCTGTCGGATTTTTTGGAGGGAAGGAGGTAG

protein sequence of NO24G02130.1

>NO24G02130.1-protein ID=NO24G02130.1-protein|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=694bp
MSELSEGSESGLLSPAVLAAALTGRPSGGVRRGAGREGGREGGMMPRSSS
TGYLLGLGFVDDEGHDPLTISQAGRGREEEEEEGKGRRDKGGWGGGEGVG
RGGNRRASRLVTALLVFERGGGRREGGRERGTPNSKCSSTGATYNTDGEG
RSFLDTPSSSSSAASSGSSSSSSLSTSFHPLPAPNCFPPPSSSLSSSSLS
SSPSSSFSASAQGLRDDLHQNLLKSMASFAMEGCHPSLTPSPSRSPSRPA
HHQQYQQKQQQYQQQQQQQQQQQQQEEEEEEVHTPLRPASSSSSSAAALA
ALAALPSSSLPPSSLGRSSSADNLYALQQQYDKHLYRQQQPQQPQQYDKH
LYQQQQWVQQRQQQEPGGRGGVPTKCLADCLPLAGERERRRERDRERDEG
RDGGQDGEEAYYYGGVGTFGAGGEQIGREGGREGGREGGGRGRGMLSSSN
SNRARWAEVVGGVPSSSSSSSSSSFQGPMGRRGGGREGGREGGLGFSGES
GGKICRFFIQGNSERGSRPGKGEEEMRLVVEEEERRSREAECMICTDAIT
GRFGLLTHCAHSFCLSCIRTWRQQHTDGSQDTANVRSCPCCKQVSHFVIP
HTRLVTDPLRKENLIQAYKDQMKQKRCRYFVYQRGNPEASLQSCPFGSSC
FYAHLKEDGTPLTPPSLRTRMGEEGRVEVVHEVKLSDFLEGRR*

mRNA from alignment at chr24:567095..569821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at chr24:567095..569821+ (Nannochloropsis oceanica)
ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT
CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC
ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC
CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG
GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA
AGGGGCGGCAATCGGAGGGGTGGGGTGTAGAGAGGGAGGAGGGAGGGAGG
GGAGAGGGAGGGGGAGAGGGAGGGGTTTTGGGAGGGAGCCATGCATTGAT
GAAGTCGTTCTCTTCGTCGCAGCTTCTAGACTTGTCACGGCCCTCTTGGT
TTTTGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGC
CGAACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAA
GGGAGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTC
CGGCTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTG
CCCCCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTA
TCTTCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGA
CGATCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAG
GTTGCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCT
GCCCACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTAC
ACACCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTC
GCCGCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGG
ACGCTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACA
AACACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAA
CACCTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCC
GGGAGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCAC
TGGCAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAA
GGGAGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGT
AGGGACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCT
AATTCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTC
GTCCTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGG
GCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAA
AGCGGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTGTGCGCATGG
CGATCGCTGCCACAATTCTCATGACCCGTCCGCCCTCCCTCCTTCAGTTC
CTCCTTTCCTGACTCCCCCCGTATCGTCTGCGCAGCTGAACGAGGGAGCA
GGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGGAG
AGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGGTAGGCAGGA
AGGAAGGGTGGGAGGAAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGAAA
TTGGAAGGAGACAGTCGGATAAGCCTGGATTCTTTTTAACCCATCATCCT
CCCCCCTTCCCTCCTTCCAACCCCTCCTTCCCTCCCCTCCTCCACCCCTC
CTTCCTCCCCCAGCCATCACCGGTCGTTTCGGATTGCTGACGCACTGTGC
TCACTCGTTTTGTTTGTCCTGCATCCGGACATGGCGACAGCAGCACACGG
ATGGGAGGTAAGCAGGGAGAGAGGGAAGGAGGGAAGAATTAGACAATGGA
GGGGTGGGGGGGAGGCTACTGCCAAACTCAATTTCATTACTGCTTTCCTT
CCCTCCCCCCGTCTCCCCCTCCCTCCCTCCCTCCCTCCCTTGCAGCCAAG
ACACGGCAAACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTC
GTCATCCCACACACCCGCCTCGTCACCGACCCCCTTCGCAAGGTGGGGAG
GGAAGGAGGGACCGAGGGAGGGAAGGGAACGGACTGTCCGATGCTTCTGT
CTCTTATGTCATGCCAGACTCCACACCCTTCCCCCCTCCCCCCTCCCTCC
CCTCCTCCCTCCCCTCCTCCTTCCCCAGGAGAATCTCATCCAGGCTTACA
AGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAACGAGGT
AATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGCTTTTA
TGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCTGAGGA
CGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGAAGCTG
TCGGATTTTTTGGAGGGAAGGAGGTAG

Coding sequence (CDS) from alignment at chr24:567095..569821+

>NO24G02130.1 ID=NO24G02130.1|Name=NO24G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at chr24:567095..569821+ (Nannochloropsis oceanica)
ATGAGTGAGTTGAGCGAAGGGAGCGAGAGTGGGCTGCTGTCGCCAGCTGT
CTTGGCAGCTGCCTTGACCGGCCGTCCCAGCGGCGGGGTGAGGAGGGGAG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGCCGAGGAGTAGCAGC
ACGGGCTATCTGCTGGGGCTTGGATTTGTGGATGACGAGGGTCATGATCC
CCTGACCATCAGCCAGGCGGGAAGGGGGAGGGAGGAGGAGGAGGAGGAGG
GGAAGGGGAGGAGGGACAAGGGGGGTTGGGGAGGGGGAGAGGGAGTGGGA
AGGGGCGGCAATCGGAGGGCTTCTAGACTTGTCACGGCCCTCTTGGTTTT
TGAGAGGGGAGGAGGAAGGAGGGAGGGCGGGCGGGAGAGAGGAACGCCGA
ACAGCAAGTGCAGTAGTACGGGAGCTACTTACAACACGGACGGGGAAGGG
AGGTCTTTTCTTGACACACCTTCCTCTTCCTCCTCCGCTGCCTCTTCCGG
CTCCTCCTCCTCCTCCTCCCTCTCCACCTCCTTCCATCCCCTTCCTGCCC
CCAACTGTTTTCCCCCTCCCTCCTCCTCCCTCTCCTCTTCTTCCCTATCT
TCCTCCCCCTCCTCCTCCTTCTCTGCCTCAGCCCAAGGGCTCCGTGACGA
TCTCCATCAAAACCTGCTCAAGAGCATGGCTTCTTTTGCTATGGAAGGTT
GCCATCCCTCCCTAACTCCCTCCCCCAGCCGCTCTCCCAGCCGGCCTGCC
CACCACCAGCAGTACCAACAAAAACAACAGCAGTACCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAAGTACACA
CCCCTCTTCGTCCGGCGTCATCGTCTTCCTCTTCAGCTGCTGCACTCGCC
GCTCTCGCTGCCCTTCCCTCTTCCTCCCTCCCTCCTTCTTCCCTTGGACG
CTCCTCGTCCGCCGACAACCTCTATGCTCTGCAGCAGCAGTACGACAAAC
ACCTCTATCGGCAGCAGCAGCCGCAGCAGCCGCAGCAGTACGACAAACAC
CTCTATCAGCAGCAGCAGTGGGTGCAACAAAGACAGCAGCAGGAGCCGGG
AGGAAGGGGAGGAGTGCCCACGAAATGCCTCGCCGACTGCTTGCCACTGG
CAGGTGAGAGGGAGAGAAGGCGAGAGAGGGACAGAGAGAGGGACGAAGGG
AGGGACGGAGGACAGGACGGGGAGGAGGCATATTATTATGGAGGGGTAGG
GACGTTTGGCGCCGGAGGAGAACAGATAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGACGGGGGAGGGGGATGTTGTCGTCTTCTAAT
TCGAACAGAGCGCGATGGGCGGAGGTGGTGGGGGGAGTCCCCTCCTCGTC
CTCATCCTCGTCCTCGTCCTCGTTTCAAGGCCCGATGGGCAGGAGGGGCG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGGCTTTTCCGGGGAAAGC
GGTGGCAAAATCTGTCGTTTTTTTATCCAAGGGAATTCTGAACGAGGGAG
CAGGCCCGGCAAGGGGGAGGAGGAGATGAGACTGGTGGTGGAGGAGGAGG
AGAGGAGGAGTAGGGAGGCCGAGTGCATGATCTGTACAGACGCCATCACC
GGTCGTTTCGGATTGCTGACGCACTGTGCTCACTCGTTTTGTTTGTCCTG
CATCCGGACATGGCGACAGCAGCACACGGATGGGAGCCAAGACACGGCAA
ACGTCCGTTCTTGTCCGTGCTGCAAGCAGGTCTCGCACTTCGTCATCCCA
CACACCCGCCTCGTCACCGACCCCCTTCGCAAGGAGAATCTCATCCAGGC
TTACAAGGACCAGATGAAACAGAAACGCTGCCGTTACTTCGTTTACCAAC
GAGGTAATCCCGAAGCCTCCCTCCAATCATGTCCCTTCGGTTCCTCATGC
TTTTATGCACACTTGAAGGAGGATGGCACGCCCCTAACGCCGCCGAGTCT
GAGGACGAGAATGGGAGAGGAAGGGAGGGTGGAAGTAGTGCATGAGGTGA
AGCTGTCGGATTTTTTGGAGGGAAGGAGGTAG

Synonyms

Publications