NO24G01950.1, NO24G01950.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01950.1
Unique Name	NO24G01950.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1779
Alignment location	chr24:511945..514824 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:511945..514824 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G01950.1 vs.
Match: EWM24405.1 (potassium voltage-gated channel subfamily d member 2 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 5.200e-65
Identity = 134/226 (59.29%), Postives = 164/226 (72.57%), Query Frame = 0

Query:   17 DIDVGLNNIFRCIFLTLHHPTFSPLAQFCALFMGMTVVVSCLAFVLSTIPRFEYQPSTCRNPTCIPGPDSECTRIICHPIPYWEFFVVEAVTVAIFTVEYVVRMCTVQCVPQRLIYPNTFL-RGGSTLGTTEPSRLTKTLRYAVRWMNIIDLASILPFYLTLYFDLGEEKLTFLRLLRLMRVIRIFRLGRYTDGGSLLRETLRASSAAVGLMFFFMTILTLLLASI 242
            D + G +N+ R +FLTLHHP FSPLA+  +  MG+T+ ++CL FVLST+PRF+ QP  C +P C+PGPDS C   IC P      F VEAVTV IFT++YV+R+  V  VP+RLI P  +L + G      EPS LTKTL + ++WMNIIDL S LPFYL L  D GEE   FLRLLR+MRVIRIFRLGRYTDG +++RETLRASSAAVGLM FFM +LTL  A+I
Sbjct:   51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAI 276

The following BLAST results are available for this feature:

BLAST of NO24G01950.1 vs.

BLAST of NO24G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24405.1	5.200e-65	59.29	potassium voltage-gated channel subfamily d member...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G01950	NO24G01950	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01950.1	NO24G01950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01950.1.cds1	NO24G01950.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds2	NO24G01950.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds3	NO24G01950.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds4	NO24G01950.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds5	NO24G01950.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds6	NO24G01950.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds7	NO24G01950.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01950.1.cds8	NO24G01950.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:511945..514824+
coding sequence from alignment at chr24:511945..514824+

mRNA sequence

>NO24G01950.1 ID=NO24G01950.1|Name=NO24G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
ATGCACACAGCAGCTGAGGATGAGGATGAGGACGACGACAACGATGATGA
CATTGATGTTGGGCTGAACAACATTTTCCGGTGCATCTTCCTAACTCTTC
ACCATCCCACTTTCAGTCCACTCGCTCAATTTTGTGCCCTATTTATGGGC
ATGACTGTCGTCGTCTCTTGCCTTGCCTTCGTCCTCTCCACCATACCGCG
GTTTGAGTACCAGCCGTCCACATGTCGCAACCCTACATGTATCCCGGGCC
CAGATTCCGAATGCACGCGCATCATATGCCACCCGATCCCGTATTGGGAG
TTTTTCGTGGTCGAAGCTGTCACGGTCGCAATTTTTACCGTCGAGTATGT
GGTACGAATGTGCACCGTCCAGTGTGTTCCTCAACGGTTAATTTATCCAA
ACACGTTTTTGCGGGGCGGAAGCACGCTTGGTACCACGGAGCCGTCGCGT
TTGACAAAGACGCTGCGATACGCCGTGCGATGGATGAACATAATTGATTT
AGCGTCGATTTTGCCCTTCTACCTGACGCTGTATTTTGACCTGGGCGAAG
AAAAACTTACTTTTCTGAGACTTCTGCGCTTGATGCGCGTCATAAGAATC
TTCCGATTGGGACGATACACCGATGGAGGCTCCCTTTTACGAGAAACCCT
CCGGGCAAGCTCGGCGGCTGTGGGTCTGATGTTTTTTTTCATGACCATCC
TTACTCTGCTCCTAGCCTCAATTGTCTACTTCGCCGAAATGGGACAATTC
AAGGTCACACCGGAGTCCCTGGATGGGAATTATTTCCGTCACAATGTGCA
CGGGGCGGACGATGAGGTTTCGCCCTTTACTTCTATCCCGGTGGCTTGCT
ATTGGGTCATCATGACGGCAACGACCGTGGGATTCGGTGATTTCTACCCA
ACCTCCACGCTCGGTCGCTTTGTGGCCGTCATTGCCGCCTACTTAGGCAT
TGTGGGCATTGCTTTGCCCTCGACCATTATCGGCAAAAGTTTCATCGAGA
TATACTTCAGAGTTCTCGACGAGCGAAAGGCCGAGCAGCGGTTGTTGGCT
AAAGAGAAGGAACGGGAGATGGAGAGAAGGGTGGAGGGGGAAGATGTGGG
AGGAGGAAGAGGATGTGGGAATTGTTTTGGATGGGTAACGAAGCAAAGTG
GTAACGCGGACGGTCGGAATGAGAGAGGGAAAACAGCGCCAAACAGATAC
ACGAGGGCCAAACTTCCACGAGAAGAGTCACAACAAGAGGAAGAACAGAT
GAAAGGAGGAGGAAGAGGAGGAAGGGAAAGGAGGGCCTGGTCGAATTTAT
ACAAGAACAAAGATAAAAGTGTGGTGAGAATGATCCACAAAAGAGAACAA
CAGATGGCCGCGGAAAAAGCTGAAGAAGAAGCCCTTGTCCACGAAATTGA
AGCACAGCTGAAACACACCACCATGGAAGAGGTGGAGGAAGCGAGGGAGG
CTGGGATGGCGGCGAGGGGGAAGATGAGGGGTTATTCACCTGCCCCACGT
CCTACGTCGGTGCCTAATTCGGGAGGGAATACGCCCAGTGGCTACATGCT
CGCGTCGATTCATCAGGCGGGCCTTGGTGCAGTGCAAGCGGCAGCGGCAT
TGCAGGCTATACCGCTGGCGAGAAAGGTGCGAAAACAGCAGCAGCAAATA
AAGGATCTGACGGCCGTGGTCCGAGAGCAGCTCCATCAAATCCAAACTCT
CACCGAGACGCTGGGCGAGATGGAAAGAGCCACTGTGGTGCTCATGGGGA
GATTGGATGAGATCGAAGAACAGGAATAA

protein sequence of NO24G01950.1

>NO24G01950.1-protein ID=NO24G01950.1-protein|Name=NO24G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MHTAAEDEDEDDDNDDDIDVGLNNIFRCIFLTLHHPTFSPLAQFCALFMG
MTVVVSCLAFVLSTIPRFEYQPSTCRNPTCIPGPDSECTRIICHPIPYWE
FFVVEAVTVAIFTVEYVVRMCTVQCVPQRLIYPNTFLRGGSTLGTTEPSR
LTKTLRYAVRWMNIIDLASILPFYLTLYFDLGEEKLTFLRLLRLMRVIRI
FRLGRYTDGGSLLRETLRASSAAVGLMFFFMTILTLLLASIVYFAEMGQF
KVTPESLDGNYFRHNVHGADDEVSPFTSIPVACYWVIMTATTVGFGDFYP
TSTLGRFVAVIAAYLGIVGIALPSTIIGKSFIEIYFRVLDERKAEQRLLA
KEKEREMERRVEGEDVGGGRGCGNCFGWVTKQSGNADGRNERGKTAPNRY
TRAKLPREESQQEEEQMKGGGRGGRERRAWSNLYKNKDKSVVRMIHKREQ
QMAAEKAEEEALVHEIEAQLKHTTMEEVEEAREAGMAARGKMRGYSPAPR
PTSVPNSGGNTPSGYMLASIHQAGLGAVQAAAALQAIPLARKVRKQQQQI
KDLTAVVREQLHQIQTLTETLGEMERATVVLMGRLDEIEEQE*

mRNA from alignment at chr24:511945..514824+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G01950.1 ID=NO24G01950.1|Name=NO24G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2880bp|location=Sequence derived from alignment at chr24:511945..514824+ (Nannochloropsis oceanica)
ATGCACACAGCAGCTGAGGATGAGGATGAGGACGACGACAACGATGATGA
CATTGATGTTGGGCTGAACAACATTTTCCGGTGCATCTTCCTAACTCTTC
ACCATCCCACTTTCAGTCCACTCGCTCAATTTTGTGCCCTATTTATGGGC
ATGACTGTCGTCGTCTCTTGCCTTGCCTTCGTCCTCTCCACCATACCGCG
GTTTGAGTACCAGCCGTCCACATGTCGCAACCCTACATGTATCCCGGGCC
CAGATTCCGAATGCACGCGCATCATATGCCACCCGATCCCGTATTGGGAG
TTTTTCGTGGTCGAAGCTGTCACGGTAAGCACTTGGAACCTCCATCTTCC
GTACCAACATGTTGAAGAGTAAGTGAGATCACGAACACTTCTCACTATTA
CCTTCCTCCGTTTGGTTAGGTCGCAATTTTTACCGTCGAGTATGTGGTAC
GAATGTGCACCGTCCAGTGTGTTCCTCAACGGTTAATTTATCCAAACACG
TTTTTGCGGGGCGGAAGCACGCTTGGTACCACGGAGCCGTCGCGTTTGAC
AAAGACGCTGCGATACGCCGTGCGATGGATGAACATAATTGATTTAGCGT
CGATTTTGCCCTTCTACCTGACGCTGTATTTTGACCTGGGCGAAGAAAAA
CTTACTTTTCTGAGACTTCTGCGCTTGATGGTAAGTGTTTGAGGAGTGGA
TAGAGAAAATGTAAGGAACTTGGTGGCTGAATAGCCTGCTGAACTGGCGG
ATATGTGATACCAAAACGGTCTTTGACTTTGAGGCTCCTGCACGCGATGG
GTCAAGGAAGGAGATGGAAAATGGGGCGTCGGCTAGGCAGGCGAATGCAA
GTTAGGAGTTTACATTTGATCTTTTCTAATTGTCGAACTTACTTATCGCG
CACCTCATTTCTATACCTAATTCTCCCGTACGCCCCTCCAGCGCGTCATA
AGAATCTTCCGATTGGGACGATACACCGATGGAGGCTCCCTTTTACGAGA
AACCCTCCGGGCAAGCTCGGCGGCTGTGGGTCTGATGTTTTTTTTCATGA
CCATCCTTACTCTGCTCCTAGCCTCAATTGTCTACTTCGCCGAAATGGGA
CAATTCAAGGTCACACCGGTAGGTAATTTTTGCCCACCCCTCACCCCTCC
TTCCTTGCGACTGTGGGCGTGGTATTTGTTTGACTCAATCGAATTCTCAA
ACAAATCGTCGTCCGATTCGTATATCTTTCAGGAGTCCCTGGATGGGAAT
TATTTCCGTCACAATGTGCACGGGGCGGACGATGAGGTTTCGCCCTTTAC
TTCTATCCCGGTGGCTTGCTATTGGGTCATCATGACGGCAACGACCGTGG
GATGTAAGGAAAGAGGGATGAATTCGGGGGAATACGGCACATATAGGCTT
GTGATAAATGGTGTCTAAGCCACTTCTACCTCGTGTGTCATAGAGACATC
CGCTGCCTCACTAACCCGCAAATGTCCTGACGTGAAGTTGTCAAGAATCA
AAGAACGTCTCTTCTTTCTCATGGCAGTTCCGATGCGGCCAACGGGGAAT
ATCAATCCGGCCCGTACACTTCGATCTTTGGTTTGATCCTTATGATAATG
AGTAACTGCACGATTAGACTTGTCATCAAGCGTCTTAAAAAAACCTTCCC
TTTGTCTATATATGACACACAACATATACAGTCGGTGATTTCTACCCAAC
CTCCACGCTCGGTCGCTTTGTGGCCGTCATTGCCGCCTACTTAGGCATTG
TGGGCATTGCTTTGCCCTCGACCATTATCGGCAAAAGTTTCATCGAGATA
TACTTCAGGTAAGGAGGGAGGTCGGTGAAATCTAGCATGTAGAGGACGCA
TGACATGTTATGAAGTAAGTCGTCACACCAGGTGAGGGAGAGTATCTACC
TCCTTCGCCTCATTCCCTCTGATTCCATCGAATCAATACAGAGTTCTCGA
CGAGCGAAAGGCCGAGCAGCGGTTGTTGGCTAAAGAGAAGGAACGGGAGA
TGGAGAGAAGGGTGGAGGGGGAAGATGTGGGAGGAGGAAGAGGATGTGGG
AATTGTTTTGGATGGGTAACGAAGCAAAGTGGTAACGCGGACGGTCGGAA
TGAGAGAGGGAAAACAGCGCCAAACAGATACACGAGGGCCAAACTTCCAC
GAGAAGAGTCACAACAAGAGGAAGAACAGATGAAAGGAGGAGGAAGAGGA
GGAAGGGAAAGGAGGGCCTGGTCGAATTTATACAAGAACAAAGATAAAAG
TGTGGTGAGAATGATCCACAAAAGAGAACAACAGATGGCCGCGGAAAAAG
CTGAAGAAGAAGCCCTTGTCCACGAAATTGAAGCACAGCTGAAACACACC
ACCATGGAAGAGGTGGAGGAAGCGAGGGAGGCTGGGATGGCGGCGAGGGG
GAAGATGAGGGGTTATTCACCTGCCCCACGTCCTACGTCGGTGCCTAATT
CGGGAGGGAATACGCCCAGTGGCTACATGCTCGCGTCGATTCATCAGGCG
GGCCTTGGTGCAGTGCAAGCGGCAGCGGCATTGCAGGCTATACCGCTGGC
GAGAAAGGTGGGATTTTCAATTATATATTTATATTTTATTCGATTTATTC
TATTTTATTTATTTATTCATGTCTATTTAATGTAAATAAAAAATAGGTGC
GAAAACAGCAGCAGCAAATAAAGGATCTGACGGCCGTGGTCCGAGAGCAG
CTCCATCAAATCCAAACTCTCACCGAGACGCTGGGCGAGATGGTATGAAG
TGAAAAAGATGAAGGATAGCGGGGTACATATGAAGATGTGCCGACACTGA
TTGAGAAATTCCACCACTCACAGGAAAGAGCCACTGTGGTGCTCATGGGG
AGATTGGATGAGATCGAAGAACAGGAATAA

Coding sequence (CDS) from alignment at chr24:511945..514824+

>NO24G01950.1 ID=NO24G01950.1|Name=NO24G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr24:511945..514824+ (Nannochloropsis oceanica)
ATGCACACAGCAGCTGAGGATGAGGATGAGGACGACGACAACGATGATGA
CATTGATGTTGGGCTGAACAACATTTTCCGGTGCATCTTCCTAACTCTTC
ACCATCCCACTTTCAGTCCACTCGCTCAATTTTGTGCCCTATTTATGGGC
ATGACTGTCGTCGTCTCTTGCCTTGCCTTCGTCCTCTCCACCATACCGCG
GTTTGAGTACCAGCCGTCCACATGTCGCAACCCTACATGTATCCCGGGCC
CAGATTCCGAATGCACGCGCATCATATGCCACCCGATCCCGTATTGGGAG
TTTTTCGTGGTCGAAGCTGTCACGGTCGCAATTTTTACCGTCGAGTATGT
GGTACGAATGTGCACCGTCCAGTGTGTTCCTCAACGGTTAATTTATCCAA
ACACGTTTTTGCGGGGCGGAAGCACGCTTGGTACCACGGAGCCGTCGCGT
TTGACAAAGACGCTGCGATACGCCGTGCGATGGATGAACATAATTGATTT
AGCGTCGATTTTGCCCTTCTACCTGACGCTGTATTTTGACCTGGGCGAAG
AAAAACTTACTTTTCTGAGACTTCTGCGCTTGATGCGCGTCATAAGAATC
TTCCGATTGGGACGATACACCGATGGAGGCTCCCTTTTACGAGAAACCCT
CCGGGCAAGCTCGGCGGCTGTGGGTCTGATGTTTTTTTTCATGACCATCC
TTACTCTGCTCCTAGCCTCAATTGTCTACTTCGCCGAAATGGGACAATTC
AAGGTCACACCGGAGTCCCTGGATGGGAATTATTTCCGTCACAATGTGCA
CGGGGCGGACGATGAGGTTTCGCCCTTTACTTCTATCCCGGTGGCTTGCT
ATTGGGTCATCATGACGGCAACGACCGTGGGATTCGGTGATTTCTACCCA
ACCTCCACGCTCGGTCGCTTTGTGGCCGTCATTGCCGCCTACTTAGGCAT
TGTGGGCATTGCTTTGCCCTCGACCATTATCGGCAAAAGTTTCATCGAGA
TATACTTCAGAGTTCTCGACGAGCGAAAGGCCGAGCAGCGGTTGTTGGCT
AAAGAGAAGGAACGGGAGATGGAGAGAAGGGTGGAGGGGGAAGATGTGGG
AGGAGGAAGAGGATGTGGGAATTGTTTTGGATGGGTAACGAAGCAAAGTG
GTAACGCGGACGGTCGGAATGAGAGAGGGAAAACAGCGCCAAACAGATAC
ACGAGGGCCAAACTTCCACGAGAAGAGTCACAACAAGAGGAAGAACAGAT
GAAAGGAGGAGGAAGAGGAGGAAGGGAAAGGAGGGCCTGGTCGAATTTAT
ACAAGAACAAAGATAAAAGTGTGGTGAGAATGATCCACAAAAGAGAACAA
CAGATGGCCGCGGAAAAAGCTGAAGAAGAAGCCCTTGTCCACGAAATTGA
AGCACAGCTGAAACACACCACCATGGAAGAGGTGGAGGAAGCGAGGGAGG
CTGGGATGGCGGCGAGGGGGAAGATGAGGGGTTATTCACCTGCCCCACGT
CCTACGTCGGTGCCTAATTCGGGAGGGAATACGCCCAGTGGCTACATGCT
CGCGTCGATTCATCAGGCGGGCCTTGGTGCAGTGCAAGCGGCAGCGGCAT
TGCAGGCTATACCGCTGGCGAGAAAGGTGCGAAAACAGCAGCAGCAAATA
AAGGATCTGACGGCCGTGGTCCGAGAGCAGCTCCATCAAATCCAAACTCT
CACCGAGACGCTGGGCGAGATGGAAAGAGCCACTGTGGTGCTCATGGGGA
GATTGGATGAGATCGAAGAACAGGAATAA

Synonyms

Publications