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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:398370..400754 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01500.3 vs.
Match: EWM24357.1 (radical sam domain protein [Nannochloropsis gaditana]) HSP 1 Score: 367.9 bits (943), Expect = 3.400e-98 Identity = 189/284 (66.55%), Postives = 225/284 (79.23%), Query Frame = 0
Query: 47 RTRPPAATAQCQHD-------AQASFAPLAHFLGVEKLEPGRIIDLSKEQLMELLTTQDGALVQALYSLAEAATTAYFGSKVYARGIVEFSNVCTKDCLYCGIRKHMKVHRYTMTKQEIVTCAEFAYTQGMGTLMLQSGELPTPERINFMLDVVRAVRLRTVEMDLEVHPSCSSSLPSASLSVTPNNLAASSQRGLAVALSLGELPSETYKAFYEAGASRYLLRIESSNPVLYHKLHPPSHSFESRRQCLNELKRIGFQVGTGVMVGVPYQDVEDMAGDLLFFK 324
R RP + T + D A+ ++PL FLG+++L+ G+ +D+S+ QL ELLTT D L++++Y++AEAATTAYFG+KVYARGIVEFSNVCTKDC YCGIRKH KVHRYTMTK+EI+ CAEFAY+QGMGTLMLQSGELP+PERINFMLDVVRA+R RT+++ E P PSA PN SQRGLAVALSLGELPS Y+AF EAGASRYLLRIE+SNP LY +LHP SHSF++RR+CL EL+RIGFQVGTGVMVGVP+Q VED A DLLFFK
Sbjct: 58 RQRPLSVTIRYASDKGTARGGAEPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPP-----FPSAG----PNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFK 332
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G01500.3 ID=NO24G01500.3|Name=NO24G01500.3|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
CCACAGACACCGATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTC
GACGGTTGCTGCTTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTC
TCGAACGTCTTGCCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCAC
CGCACTCGCCCGCCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGC
TTCGTTTGCTCCCTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAG
GGCGCATCATAGACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACG
CAAGACGGTGCCTTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAAC
GACGGCATACTTTGGGTCCAAGGTATATGCAAGGGGCATCGTCGAGTTTA
GCAATGTCTGTACCAAGGATTGTCTCTACTGCGGCATCCGCAAGCACATG
AAAGTGCACCGGTACACCATGACAAAACAAGAAATTGTGACTTGCGCGGA
ATTTGCCTACACCCAAGGGATGGGCACGCTTATGCTCCAATCGGGGGAAC
TGCCAACTCCTGAGCGGATCAATTTCATGCTCGACGTCGTCCGCGCCGTC
CGTCTTCGCACAGTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTC
GTCCTTACCTTCTGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTT
CCTCTCAGCGCGGCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCA
GAAACTTACAAAGCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAG
GATCGAATCAAGCAACCCCGTTCTCTATCACAAACTACATCCACCCTCTC
ACTCCTTTGAATCACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGG
TTCCAGGTTGGGACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGA
GGACATGGCGGGCGATCTGCTGTTTTTCAAGGTAATTACTCTCTTCATCA
TATGAATAGCAGGGAATACTCTGTCATCGAATCGTTCTATTGAATTTGAA
TTCTGTCTAGACTTAGCTAGGACAAGTCTGGTGCGCTCAGCATCACACCT
CGGTGATGAGAGGAGCGCTGAAGGGAAGCTCACGCGGGTCTGACAGCGCT
TTGAGTCACCCTTTCGCACTCGTTCCCTTTTTTCTCTCTCCTTTCTTTCA
GGAATTTGACCCCGACATGATTGGCCTGGGTCCATACATCGTCCAAGCCA
AAACTCCGCTCGGACAAGTCTACCTCGCTGAGCGCCAACACCACTCAGCA
GAAGAACTTGAAAAGGAAAGGATAGATCTCTTGGAGCGAACGACACGGAT
GTATGCGCTCGCAAGACTGATACTAGGAAATGTGAATATCGCGGCGACGA
CCGCATTGCAGGCCCTCGATCCACAGGGGAGAGAGCTAGCGTTGCGGCGG
GGGGCGAATGTAGTGATGCCCATTATTACCCCTCAAAGGTTGAGAGAGGA
ATACCAGATTTACGAGAACAAGCCTGGCATTGATCAAGATGCTTTGGAAA
GCACCGCCTGTCTTGATCTTCGCGTGCAGCTAGCGGGGAAAGAGTTGCTG
CTGGACGGGAGATGGCACGACCCCCCCATTATTTGACGCGGAAGGTGAGA
TAATAAGAAAGAGAGAGACAAGTATTGCTGGTAAATGAGCATTTTGACAT
GTTCGACGGCAAAATAAAGATGTATGGTGACAGACAGATAGATGTTTGAG
GACCTGCTGAATGAAGAATCAAAGGAAAAATGGAAAGAAGATTTCCCAAA
AAGGCACGAGAAGAC back to topprotein sequence of NO24G01500.3 >NO24G01500.3-protein ID=NO24G01500.3-protein|Name=NO24G01500.3|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MLLLKKNVAVTGSTVAAFFRKRPRLPVAPLERLASSSPSPPTVTFHRTRP
PAATAQCQHDAQASFAPLAHFLGVEKLEPGRIIDLSKEQLMELLTTQDGA
LVQALYSLAEAATTAYFGSKVYARGIVEFSNVCTKDCLYCGIRKHMKVHR
YTMTKQEIVTCAEFAYTQGMGTLMLQSGELPTPERINFMLDVVRAVRLRT
VEMDLEVHPSCSSSLPSASLSVTPNNLAASSQRGLAVALSLGELPSETYK
AFYEAGASRYLLRIESSNPVLYHKLHPPSHSFESRRQCLNELKRIGFQVG
TGVMVGVPYQDVEDMAGDLLFFKVITLFII* back to topmRNA from alignment at chr24:398370..400754- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G01500.3 ID=NO24G01500.3|Name=NO24G01500.3|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp|location=Sequence derived from alignment at chr24:398370..400754- (Nannochloropsis oceanica)
CCACAGACACCGATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTC
GACGGTTGCTGCTTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTC
TCGAACGTCTTGCCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCAC
CGCACTCGCCCGCCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGC
TTCGTTTGCTCCCTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAG
GGCGCATCATAGACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACG
CAAGACGGTGCCTTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAAC
GAGTAAGTGCATGCAGAATTGGATTATAGAGTTGCCCAAGTAGTAATGGT
TGACATAAGAGAAATAGCCTTTCGAACTCACATTCGTCCCTCCCTTCTTT
CCTTTCTTTTTCCTTTCTGTGCCCAACAGCGGCATACTTTGGGTCCAAGG
TATATGCAAGGGGCATCGTCGAGTTTAGCAATGTCTGTACCAAGGATTGT
CTCTACTGCGGCATCCGCAAGCACATGGTGAGGAGGAGGCGGAGGAGGGC
GAAGAGTAGAAGGAGTAGAGACTGTGGCCCTGTTCACTGCATTCCGTGTG
TGTATCTCCCTCTCATCGTCCCATTTCCACCCCCTTTTTATCTCATTCCA
AATATGCAGAAAGTGCACCGGTACACCATGACAAAACAAGAAATTGTGAC
TTGCGCGGAATTTGCCTACACCCAAGGGATGGGCACGCTTATGCTCCAAT
CGGGGGAACTGCCAACTCCTGAGCGGATCAAGTAAGTGGAGATAGGAGGG
AAATGAGATACAAAAGTGAAAGTACTCATCACAATGGCACAATTCCGGAC
CTGATTTTCAAACAAGTCATTCTTCTTCCTCTATCCCTACTTATTATCTC
CTTTTCTCATAGTTTCATGCTCGACGTCGTCCGCGCCGTCCGTCTTCGCA
CAGTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTCGTCCTTACCT
TCTGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTTCCTCTCAGCG
CGGCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCAGAAACTTACA
AAGCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAGGATCGAATCA
AGCAACCCCGTTCTCTATCACAAACTACATCCACCCTCTCACTCCTTTGA
ATCACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGGTTCCAGGTTG
GGACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGAGGACATGGCG
GGCGATCTGCTGTTTTTCAAGGTAATTACTCTCTTCATCATATGAATAGC
AGGGAATACTCTGTCATCGAATCGTTCTATTGAATTTGAATTCTGTCTAG
ACTTAGCTAGGACAAGTCTGGTGCGCTCAGCATCACACCTCGGTGATGAG
AGGAGCGCTGAAGGGAAGCTCACGCGGGTCTGACAGCGCTTTGAGTCACC
CTTTCGCACTCGTTCCCTTTTTTCTCTCTCCTTTCTTTCAGGAATTTGAC
CCCGACATGATTGGCCTGGGTCCATACATCGTCCAAGCCAAAACTCCGCT
CGGACAAGTCTACCTCGCTGAGCGCCAACACCACTCAGCAGAAGAACTTG
AAAAGGAAAGGATAGATCTCTTGGAGCGAACGACACGGATGTATGCGCTC
GCAAGACTGATACTAGGAAATGTGAATATCGCGGCGACGACCGCATTGCA
GGCCCTCGATCCACAGGGGAGAGAGCTAGCGTTGCGGCGGGGGGCGAATG
TAGTGATGCCCATTATTACCCCTCAAAGGTTGAGAGGTAGGTGAGTACGG
CGGGACGGAAGAAACGTATACACCCTTTGAATCTCTTTGAAGGTTGCTTT
GGTACCTTTTTATATTTTATATCCGTCAATAGCAAGAGACTTCTCCTTTC
CTTATGGCGGGTGAACCACGAATTAACTCAATGCTTTCTTCTCCTCTCAC
TTTTTTGCGCCCTCAGAGGAATACCAGATTTACGAGAACAAGCCTGGCAT
TGATCAAGATGCTTTGGAAAGCACCGCCTGTCTTGATCTTCGCGTGCAGC
TAGCGGGGAAAGAGTTGCTGCTGGACGGGAGATGGCACGACCCCCCCATT
ATTTGACGCGGAAGGTGAGATAATAAGAAAGAGAGAGACAAGTATTGCTG
GTAAATGAGCATTTTGACATGTTCGACGGCAAAATAAAGATGTATGGTGA
CAGACAGATAGATGTTTGAGGACCTGCTGAATGAAGAATCAAAGGAAAAA
TGGAAAGAAGATTTCCCAAAAAGGCACGAGAAGAC back to topCoding sequence (CDS) from alignment at chr24:398370..400754- >NO24G01500.3 ID=NO24G01500.3|Name=NO24G01500.3|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr24:398370..400754- (Nannochloropsis oceanica)
ATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTCGACGGTTGCTGC
TTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTCTCGAACGTCTTG
CCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCACCGCACTCGCCCG
CCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGCTTCGTTTGCTCC
CTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAGGGCGCATCATAG
ACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACGCAAGACGGTGCC
TTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAACGACGGCATACTT
TGGGTCCAAGGTATATGCAAGGGGCATCGTCGAGTTTAGCAATGTCTGTA
CCAAGGATTGTCTCTACTGCGGCATCCGCAAGCACATGAAAGTGCACCGG
TACACCATGACAAAACAAGAAATTGTGACTTGCGCGGAATTTGCCTACAC
CCAAGGGATGGGCACGCTTATGCTCCAATCGGGGGAACTGCCAACTCCTG
AGCGGATCAATTTCATGCTCGACGTCGTCCGCGCCGTCCGTCTTCGCACA
GTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTCGTCCTTACCTTC
TGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTTCCTCTCAGCGCG
GCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCAGAAACTTACAAA
GCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAGGATCGAATCAAG
CAACCCCGTTCTCTATCACAAACTACATCCACCCTCTCACTCCTTTGAAT
CACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGGTTCCAGGTTGGG
ACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGAGGACATGGCGGG
CGATCTGCTGTTTTTCAAGGTAATTACTCTCTTCATCATATGA back to top
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