NO24G01500.1, NO24G01500.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01500.1
Unique Name	NO24G01500.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1595
Alignment location	chr24:398370..400754 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:398370..400754 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G01500.1 vs.
Match: EWM24357.1 (radical sam domain protein [Nannochloropsis gaditana])

HSP 1 Score: 592.8 bits (1527), Expect = 9.200e-166
Identity = 299/426 (70.19%), Postives = 353/426 (82.86%), Query Frame = 0

Query:   47 RTRPPAATAQCQHD-------AQASFAPLAHFLGVEKLEPGRIIDLSKEQLMELLTTQDGALVQALYSLAEAATTAYFGSKVYARGIVEFSNVCTKDCLYCGIRKHMKVHRYTMTKQEIVTCAEFAYTQGMGTLMLQSGELPTPERINFMLDVVRAVRLRTVEMDLEVHPSCSSSLPSASLSVTPNNLAASSQRGLAVALSLGELPSETYKAFYEAGASRYLLRIESSNPVLYHKLHPPSHSFESRRQCLNELKRIGFQVGTGVMVGVPYQDVEDMAGDLLFFKEFDPDMIGLGPYIVQAKTPLGQVYLAERQHHSAEELEKERIDLLERTTRMYALARLILGNVNIAATTALQALDPQGRELALRRGANVVMPIITPQRLREEYQIYENKPGIDQDALESTACLDLRVQLAGKELLLDGRWHDPP 466
            R RP + T +   D       A+  ++PL  FLG+++L+ G+ +D+S+ QL ELLTT D  L++++Y++AEAATTAYFG+KVYARGIVEFSNVCTKDC YCGIRKH KVHRYTMTK+EI+ CAEFAY+QGMGTLMLQSGELP+PERINFMLDVVRA+R RT+++  E  P      PSA     PN     SQRGLAVALSLGELPS  Y+AF EAGASRYLLRIE+SNP LY +LHP SHSF++RR+CL EL+RIGFQVGTGVMVGVP+Q VED A DLLFFKE DPDMIGLGPYIVQ++TPLG+++L E    SA + E  R+ LLERTTRMYALAR++LGNVNIAATTAL+ALDP+GRELALRRGANVVMPIITPQRLR +Y+IYENKPGIDQDAL+STACL+ RV++AGK+LLLDG WHDPP
Sbjct:   58 RQRPLSVTIRYASDKGTARGGAEPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPP-----FPSAG----PNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPP 474

The following BLAST results are available for this feature:

BLAST of NO24G01500.1 vs.

BLAST of NO24G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24357.1	9.200e-166	70.19	radical sam domain protein [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G01500	NO24G01500	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01500.1	NO24G01500.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01500.1.cds1	NO24G01500.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01500.1.cds2	NO24G01500.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01500.1.cds3	NO24G01500.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01500.1.cds4	NO24G01500.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01500.1.cds5	NO24G01500.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01500.1.cds6	NO24G01500.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:398370..400754-
coding sequence from alignment at chr24:398370..400754-

mRNA sequence

>NO24G01500.1 ID=NO24G01500.1|Name=NO24G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
CCACAGACACCGATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTC
GACGGTTGCTGCTTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTC
TCGAACGTCTTGCCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCAC
CGCACTCGCCCGCCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGC
TTCGTTTGCTCCCTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAG
GGCGCATCATAGACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACG
CAAGACGGTGCCTTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAAC
GACGGCATACTTTGGGTCCAAGGTATATGCAAGGGGCATCGTCGAGTTTA
GCAATGTCTGTACCAAGGATTGTCTCTACTGCGGCATCCGCAAGCACATG
AAAGTGCACCGGTACACCATGACAAAACAAGAAATTGTGACTTGCGCGGA
ATTTGCCTACACCCAAGGGATGGGCACGCTTATGCTCCAATCGGGGGAAC
TGCCAACTCCTGAGCGGATCAATTTCATGCTCGACGTCGTCCGCGCCGTC
CGTCTTCGCACAGTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTC
GTCCTTACCTTCTGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTT
CCTCTCAGCGCGGCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCA
GAAACTTACAAAGCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAG
GATCGAATCAAGCAACCCCGTTCTCTATCACAAACTACATCCACCCTCTC
ACTCCTTTGAATCACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGG
TTCCAGGTTGGGACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGA
GGACATGGCGGGCGATCTGCTGTTTTTCAAGGAATTTGACCCCGACATGA
TTGGCCTGGGTCCATACATCGTCCAAGCCAAAACTCCGCTCGGACAAGTC
TACCTCGCTGAGCGCCAACACCACTCAGCAGAAGAACTTGAAAAGGAAAG
GATAGATCTCTTGGAGCGAACGACACGGATGTATGCGCTCGCAAGACTGA
TACTAGGAAATGTGAATATCGCGGCGACGACCGCATTGCAGGCCCTCGAT
CCACAGGGGAGAGAGCTAGCGTTGCGGCGGGGGGCGAATGTAGTGATGCC
CATTATTACCCCTCAAAGGTTGAGAGAGGAATACCAGATTTACGAGAACA
AGCCTGGCATTGATCAAGATGCTTTGGAAAGCACCGCCTGTCTTGATCTT
CGCGTGCAGCTAGCGGGGAAAGAGTTGCTGCTGGACGGGAGATGGCACGA
CCCCCCCATTATTTGACGCGGAAGGTGAGATAATAAGAAAGAGAGAGACA
AGTATTGCTGGTAAATGAGCATTTTGACATGTTCGACGGCAAAATAAAGA
TGTATGGTGACAGACAGATAGATGTTTGAGGACCTGCTGAATGAAGAATC
AAAGGAAAAATGGAAAGAAGATTTCCCAAAAAGGCACGAGAAGAC

protein sequence of NO24G01500.1

>NO24G01500.1-protein ID=NO24G01500.1-protein|Name=NO24G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MLLLKKNVAVTGSTVAAFFRKRPRLPVAPLERLASSSPSPPTVTFHRTRP
PAATAQCQHDAQASFAPLAHFLGVEKLEPGRIIDLSKEQLMELLTTQDGA
LVQALYSLAEAATTAYFGSKVYARGIVEFSNVCTKDCLYCGIRKHMKVHR
YTMTKQEIVTCAEFAYTQGMGTLMLQSGELPTPERINFMLDVVRAVRLRT
VEMDLEVHPSCSSSLPSASLSVTPNNLAASSQRGLAVALSLGELPSETYK
AFYEAGASRYLLRIESSNPVLYHKLHPPSHSFESRRQCLNELKRIGFQVG
TGVMVGVPYQDVEDMAGDLLFFKEFDPDMIGLGPYIVQAKTPLGQVYLAE
RQHHSAEELEKERIDLLERTTRMYALARLILGNVNIAATTALQALDPQGR
ELALRRGANVVMPIITPQRLREEYQIYENKPGIDQDALESTACLDLRVQL
AGKELLLDGRWHDPPII*

mRNA from alignment at chr24:398370..400754-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G01500.1 ID=NO24G01500.1|Name=NO24G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp|location=Sequence derived from alignment at chr24:398370..400754- (Nannochloropsis oceanica)
CCACAGACACCGATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTC
GACGGTTGCTGCTTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTC
TCGAACGTCTTGCCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCAC
CGCACTCGCCCGCCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGC
TTCGTTTGCTCCCTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAG
GGCGCATCATAGACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACG
CAAGACGGTGCCTTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAAC
GAGTAAGTGCATGCAGAATTGGATTATAGAGTTGCCCAAGTAGTAATGGT
TGACATAAGAGAAATAGCCTTTCGAACTCACATTCGTCCCTCCCTTCTTT
CCTTTCTTTTTCCTTTCTGTGCCCAACAGCGGCATACTTTGGGTCCAAGG
TATATGCAAGGGGCATCGTCGAGTTTAGCAATGTCTGTACCAAGGATTGT
CTCTACTGCGGCATCCGCAAGCACATGGTGAGGAGGAGGCGGAGGAGGGC
GAAGAGTAGAAGGAGTAGAGACTGTGGCCCTGTTCACTGCATTCCGTGTG
TGTATCTCCCTCTCATCGTCCCATTTCCACCCCCTTTTTATCTCATTCCA
AATATGCAGAAAGTGCACCGGTACACCATGACAAAACAAGAAATTGTGAC
TTGCGCGGAATTTGCCTACACCCAAGGGATGGGCACGCTTATGCTCCAAT
CGGGGGAACTGCCAACTCCTGAGCGGATCAAGTAAGTGGAGATAGGAGGG
AAATGAGATACAAAAGTGAAAGTACTCATCACAATGGCACAATTCCGGAC
CTGATTTTCAAACAAGTCATTCTTCTTCCTCTATCCCTACTTATTATCTC
CTTTTCTCATAGTTTCATGCTCGACGTCGTCCGCGCCGTCCGTCTTCGCA
CAGTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTCGTCCTTACCT
TCTGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTTCCTCTCAGCG
CGGCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCAGAAACTTACA
AAGCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAGGATCGAATCA
AGCAACCCCGTTCTCTATCACAAACTACATCCACCCTCTCACTCCTTTGA
ATCACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGGTTCCAGGTTG
GGACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGAGGACATGGCG
GGCGATCTGCTGTTTTTCAAGGTAATTACTCTCTTCATCATATGAATAGC
AGGGAATACTCTGTCATCGAATCGTTCTATTGAATTTGAATTCTGTCTAG
ACTTAGCTAGGACAAGTCTGGTGCGCTCAGCATCACACCTCGGTGATGAG
AGGAGCGCTGAAGGGAAGCTCACGCGGGTCTGACAGCGCTTTGAGTCACC
CTTTCGCACTCGTTCCCTTTTTTCTCTCTCCTTTCTTTCAGGAATTTGAC
CCCGACATGATTGGCCTGGGTCCATACATCGTCCAAGCCAAAACTCCGCT
CGGACAAGTCTACCTCGCTGAGCGCCAACACCACTCAGCAGAAGAACTTG
AAAAGGAAAGGATAGATCTCTTGGAGCGAACGACACGGATGTATGCGCTC
GCAAGACTGATACTAGGAAATGTGAATATCGCGGCGACGACCGCATTGCA
GGCCCTCGATCCACAGGGGAGAGAGCTAGCGTTGCGGCGGGGGGCGAATG
TAGTGATGCCCATTATTACCCCTCAAAGGTTGAGAGGTAGGTGAGTACGG
CGGGACGGAAGAAACGTATACACCCTTTGAATCTCTTTGAAGGTTGCTTT
GGTACCTTTTTATATTTTATATCCGTCAATAGCAAGAGACTTCTCCTTTC
CTTATGGCGGGTGAACCACGAATTAACTCAATGCTTTCTTCTCCTCTCAC
TTTTTTGCGCCCTCAGAGGAATACCAGATTTACGAGAACAAGCCTGGCAT
TGATCAAGATGCTTTGGAAAGCACCGCCTGTCTTGATCTTCGCGTGCAGC
TAGCGGGGAAAGAGTTGCTGCTGGACGGGAGATGGCACGACCCCCCCATT
ATTTGACGCGGAAGGTGAGATAATAAGAAAGAGAGAGACAAGTATTGCTG
GTAAATGAGCATTTTGACATGTTCGACGGCAAAATAAAGATGTATGGTGA
CAGACAGATAGATGTTTGAGGACCTGCTGAATGAAGAATCAAAGGAAAAA
TGGAAAGAAGATTTCCCAAAAAGGCACGAGAAGAC

Coding sequence (CDS) from alignment at chr24:398370..400754-

>NO24G01500.1 ID=NO24G01500.1|Name=NO24G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr24:398370..400754- (Nannochloropsis oceanica)
ATGCTGCTTCTTAAAAAAAATGTGGCTGTCACTGGTTCGACGGTTGCTGC
TTTTTTTCGCAAACGTCCACGTCTCCCGGTCGCCCCTCTCGAACGTCTTG
CCTCCTCATCTCCCTCTCCCCCTACTGTAACATTCCACCGCACTCGCCCG
CCAGCCGCTACGGCACAATGCCAGCACGATGCTCAAGCTTCGTTTGCTCC
CTTAGCGCACTTTCTAGGGGTGGAGAAACTCGAGCCAGGGCGCATCATAG
ACCTCTCCAAGGAGCAGCTGATGGAACTATTGACGACGCAAGACGGTGCC
TTGGTACAGGCCTTGTATTCCCTCGCGGAGGCCGCAACGACGGCATACTT
TGGGTCCAAGGTATATGCAAGGGGCATCGTCGAGTTTAGCAATGTCTGTA
CCAAGGATTGTCTCTACTGCGGCATCCGCAAGCACATGAAAGTGCACCGG
TACACCATGACAAAACAAGAAATTGTGACTTGCGCGGAATTTGCCTACAC
CCAAGGGATGGGCACGCTTATGCTCCAATCGGGGGAACTGCCAACTCCTG
AGCGGATCAATTTCATGCTCGACGTCGTCCGCGCCGTCCGTCTTCGCACA
GTCGAAATGGACCTCGAAGTTCATCCCTCCTGTTCCTCGTCCTTACCTTC
TGCTTCTCTCTCAGTGACGCCCAATAACCTCGCAGCTTCCTCTCAGCGCG
GCCTCGCCGTGGCTCTGTCCCTGGGGGAACTACCTTCAGAAACTTACAAA
GCGTTCTACGAGGCAGGCGCCTCTCGCTATCTTCTGAGGATCGAATCAAG
CAACCCCGTTCTCTATCACAAACTACATCCACCCTCTCACTCCTTTGAAT
CACGCCGGCAGTGCTTGAATGAATTGAAAAGGATTGGGTTCCAGGTTGGG
ACGGGAGTGATGGTCGGCGTGCCCTATCAAGATGTGGAGGACATGGCGGG
CGATCTGCTGTTTTTCAAGGAATTTGACCCCGACATGATTGGCCTGGGTC
CATACATCGTCCAAGCCAAAACTCCGCTCGGACAAGTCTACCTCGCTGAG
CGCCAACACCACTCAGCAGAAGAACTTGAAAAGGAAAGGATAGATCTCTT
GGAGCGAACGACACGGATGTATGCGCTCGCAAGACTGATACTAGGAAATG
TGAATATCGCGGCGACGACCGCATTGCAGGCCCTCGATCCACAGGGGAGA
GAGCTAGCGTTGCGGCGGGGGGCGAATGTAGTGATGCCCATTATTACCCC
TCAAAGGTTGAGAGAGGAATACCAGATTTACGAGAACAAGCCTGGCATTG
ATCAAGATGCTTTGGAAAGCACCGCCTGTCTTGATCTTCGCGTGCAGCTA
GCGGGGAAAGAGTTGCTGCTGGACGGGAGATGGCACGACCCCCCCATTAT
TTGA

Synonyms

Publications