NO24G01470.1, NO24G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01470.1
Unique NameNO24G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr24:389867..391475 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:389867..391475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01470NO24G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01470.1NO24G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01470.1.cds1NO24G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01470.1.cds2NO24G01470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01470.1 ID=NO24G01470.1|Name=NO24G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
ACAGACAGACAGCCAGCTTCCAGCGATGAGCCAGCGCGCTGTGCTCGTCC
GCCCCGGGGAGCGCCTCCAAGGCCGGGGCGGCGGGCGGGGAAACAAATTT
CGTCCAGTTGTCCGGCCCCGACCTCCTGGCTGCAGCCCTCCCTCCCGCCC
TCCGTCTCGCCCGGTGCTCGCCGCCCACAATGACGACGAGGAGGAGGAGG
AAGAGGACGAGGAAGAGAAAGCGGAAGAGGAAAAGGACAAGAACCAGCCA
CACCACGAAGGAGATGGAGAGCTACACGAGCCCCAAATACAGCAGCAAAC
GTCGCTGCAAGTACTGCAGCCGATGTCTCGGCAGCTACAGCAGCTGCAAC
AGCGGCACAAGCAGCAGCCGCAGCGGCAGCAAAAGCATTTCAGTCAAGAG
GATGATATAGATGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGA
GGAGGAGGAGGAATGCGAAAACGAGAAGGAGCAGCACGAAGAAGAAAGAG
CAGAAGCGGCGGAAGGAGCAGCAGCGATCGAAGGGCTGCACATCTCCTTT
TCTTCGTCCGAGCAGCCGCAGCACGGAGTCCCAACGCGGCGGGCGCCGAT
GGTAATCCAAGCCCCAACGATGACGAATGCCGGCCGTTACACCCTTTCTA
CCTCACTTGCCGCGTCGTCTTCTTCTGCAACTGCTGTACGTCAACGCGTG
ACCACTACTTCTTCACCACCACAAGAAGAGGACGGAGAGGAGGAGGAGGA
GGAGGAGGAGGGGGACGTGGAAGCGCTCCGGGCACTTATGAATCTAGGAG
GAAGGAAGAGGGAAGGGAAGAAGACGAGAGGGCAGCAGCAGCAGAAGAGT
GGAAAGCAGAAAGGAAAGGGCAAAGGTAAGGCTATCACAACTACTGCTGC
TGCCGCCGCTGCTGCTGCTGCTGCTTCAACGACTGATACCGCAGTTGCCA
GGAAAGGTAGAAAGAGGACGCCGAAAAGGAAGATCAATGCAGAGATGGAG
AATGACGAAGGAAAAGAGGAGAAACAGGAAGAAGGGGAGAAAGACTATAT
TAATAAGGCAAAGAAGGGAGGGAAAAGAGTCAAGAAGACGGTAGTTGTAT
CGCCAGCTGCTGGGACGAAGGGAGGGAAGAAGGGATCAGCAGCGATTGTA
GAGGGAGTAGGGAAGAGGAGGGTAGGGGAGGACATTGCGACGAGTGATGC
TCCTCCTGAGGGAAAGGGCAAAAAGAATGTACTTGCTGCCGCAGCGCTAG
CCAAGAAGAAGAAGGAGAAGCAGCAGAAGTTCAAGAAAGAGGAAGCAAAG
CGCCTAGCGAAGGAGACCCGGAAGAAAGAGAAAAAGGAGAGGAGCGAGGA
GCGGAAGAAGGCCAAGGCTGCCGCTGCTGCTGCCGAGCCTATCTCTATCA
CAGGCCGCAGCGGACGCCGTCGTCGTGTCATCCCACCCCCACCTCCTTCC
TCCTCCTCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTT
CCTCCTCTTCGTCTTCCTCTGA
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protein sequence of NO24G01470.1

>NO24G01470.1-protein ID=NO24G01470.1-protein|Name=NO24G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MSQRAVLVRPGERLQGRGGGRGNKFRPVVRPRPPGCSPPSRPPSRPVLAA
HNDDEEEEEEDEEEKAEEEKDKNQPHHEGDGELHEPQIQQQTSLQVLQPM
SRQLQQLQQRHKQQPQRQQKHFSQEDDIDEEEEEEEEVEVEEEEEECENE
KEQHEEERAEAAEGAAAIEGLHISFSSSEQPQHGVPTRRAPMVIQAPTMT
NAGRYTLSTSLAASSSSATAVRQRVTTTSSPPQEEDGEEEEEEEEGDVEA
LRALMNLGGRKREGKKTRGQQQQKSGKQKGKGKGKAITTTAAAAAAAAAA
STTDTAVARKGRKRTPKRKINAEMENDEGKEEKQEEGEKDYINKAKKGGK
RVKKTVVVSPAAGTKGGKKGSAAIVEGVGKRRVGEDIATSDAPPEGKGKK
NVLAAAALAKKKKEKQQKFKKEEAKRLAKETRKKEKKERSEERKKAKAAA
AAAEPISITGRSGRRRRVIPPPPPSSSSSSLLLLLLLLLLLFLLFVFL*
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mRNA from alignment at chr24:389867..391475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01470.1 ID=NO24G01470.1|Name=NO24G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at chr24:389867..391475- (Nannochloropsis oceanica)
ACAGACAGACAGCCAGCTTCCAGCGATGAGCCAGCGCGCTGTGCTCGTCC
GCCCCGGGGAGCGCCTCCAAGGTACGTATTTAGAGATTGCTTGTGGCGCG
CATGCATGTTAGTGATGATGATGCTTGACCATCAAACGGACATCACAATG
ATCACAAGGCCGGGGCGGCGGGCGGGGAAACAAATTTCGTCCAGTTGTCC
GGCCCCGACCTCCTGGCTGCAGCCCTCCCTCCCGCCCTCCGTCTCGCCCG
GTGCTCGCCGCCCACAATGACGACGAGGAGGAGGAGGAAGAGGACGAGGA
AGAGAAAGCGGAAGAGGAAAAGGACAAGAACCAGCCACACCACGAAGGAG
ATGGAGAGCTACACGAGCCCCAAATACAGCAGCAAACGTCGCTGCAAGTA
CTGCAGCCGATGTCTCGGCAGCTACAGCAGCTGCAACAGCGGCACAAGCA
GCAGCCGCAGCGGCAGCAAAAGCATTTCAGTCAAGAGGATGATATAGATG
AGGAGGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGAA
TGCGAAAACGAGAAGGAGCAGCACGAAGAAGAAAGAGCAGAAGCGGCGGA
AGGAGCAGCAGCGATCGAAGGGCTGCACATCTCCTTTTCTTCGTCCGAGC
AGCCGCAGCACGGAGTCCCAACGCGGCGGGCGCCGATGGTAATCCAAGCC
CCAACGATGACGAATGCCGGCCGTTACACCCTTTCTACCTCACTTGCCGC
GTCGTCTTCTTCTGCAACTGCTGTACGTCAACGCGTGACCACTACTTCTT
CACCACCACAAGAAGAGGACGGAGAGGAGGAGGAGGAGGAGGAGGAGGGG
GACGTGGAAGCGCTCCGGGCACTTATGAATCTAGGAGGAAGGAAGAGGGA
AGGGAAGAAGACGAGAGGGCAGCAGCAGCAGAAGAGTGGAAAGCAGAAAG
GAAAGGGCAAAGGTAAGGCTATCACAACTACTGCTGCTGCCGCCGCTGCT
GCTGCTGCTGCTTCAACGACTGATACCGCAGTTGCCAGGAAAGGTAGAAA
GAGGACGCCGAAAAGGAAGATCAATGCAGAGATGGAGAATGACGAAGGAA
AAGAGGAGAAACAGGAAGAAGGGGAGAAAGACTATATTAATAAGGCAAAG
AAGGGAGGGAAAAGAGTCAAGAAGACGGTAGTTGTATCGCCAGCTGCTGG
GACGAAGGGAGGGAAGAAGGGATCAGCAGCGATTGTAGAGGGAGTAGGGA
AGAGGAGGGTAGGGGAGGACATTGCGACGAGTGATGCTCCTCCTGAGGGA
AAGGGCAAAAAGAATGTACTTGCTGCCGCAGCGCTAGCCAAGAAGAAGAA
GGAGAAGCAGCAGAAGTTCAAGAAAGAGGAAGCAAAGCGCCTAGCGAAGG
AGACCCGGAAGAAAGAGAAAAAGGAGAGGAGCGAGGAGCGGAAGAAGGCC
AAGGCTGCCGCTGCTGCTGCCGAGCCTATCTCTATCACAGGCCGCAGCGG
ACGCCGTCGTCGTGTCATCCCACCCCCACCTCCTTCCTCCTCCTCCTCCT
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCGTC
TTCCTCTGA
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Coding sequence (CDS) from alignment at chr24:389867..391475-

>NO24G01470.1 ID=NO24G01470.1|Name=NO24G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr24:389867..391475- (Nannochloropsis oceanica)
ATGAGCCAGCGCGCTGTGCTCGTCCGCCCCGGGGAGCGCCTCCAAGGCCG
GGGCGGCGGGCGGGGAAACAAATTTCGTCCAGTTGTCCGGCCCCGACCTC
CTGGCTGCAGCCCTCCCTCCCGCCCTCCGTCTCGCCCGGTGCTCGCCGCC
CACAATGACGACGAGGAGGAGGAGGAAGAGGACGAGGAAGAGAAAGCGGA
AGAGGAAAAGGACAAGAACCAGCCACACCACGAAGGAGATGGAGAGCTAC
ACGAGCCCCAAATACAGCAGCAAACGTCGCTGCAAGTACTGCAGCCGATG
TCTCGGCAGCTACAGCAGCTGCAACAGCGGCACAAGCAGCAGCCGCAGCG
GCAGCAAAAGCATTTCAGTCAAGAGGATGATATAGATGAGGAGGAGGAGG
AGGAGGAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGAATGCGAAAACGAG
AAGGAGCAGCACGAAGAAGAAAGAGCAGAAGCGGCGGAAGGAGCAGCAGC
GATCGAAGGGCTGCACATCTCCTTTTCTTCGTCCGAGCAGCCGCAGCACG
GAGTCCCAACGCGGCGGGCGCCGATGGTAATCCAAGCCCCAACGATGACG
AATGCCGGCCGTTACACCCTTTCTACCTCACTTGCCGCGTCGTCTTCTTC
TGCAACTGCTGTACGTCAACGCGTGACCACTACTTCTTCACCACCACAAG
AAGAGGACGGAGAGGAGGAGGAGGAGGAGGAGGAGGGGGACGTGGAAGCG
CTCCGGGCACTTATGAATCTAGGAGGAAGGAAGAGGGAAGGGAAGAAGAC
GAGAGGGCAGCAGCAGCAGAAGAGTGGAAAGCAGAAAGGAAAGGGCAAAG
GTAAGGCTATCACAACTACTGCTGCTGCCGCCGCTGCTGCTGCTGCTGCT
TCAACGACTGATACCGCAGTTGCCAGGAAAGGTAGAAAGAGGACGCCGAA
AAGGAAGATCAATGCAGAGATGGAGAATGACGAAGGAAAAGAGGAGAAAC
AGGAAGAAGGGGAGAAAGACTATATTAATAAGGCAAAGAAGGGAGGGAAA
AGAGTCAAGAAGACGGTAGTTGTATCGCCAGCTGCTGGGACGAAGGGAGG
GAAGAAGGGATCAGCAGCGATTGTAGAGGGAGTAGGGAAGAGGAGGGTAG
GGGAGGACATTGCGACGAGTGATGCTCCTCCTGAGGGAAAGGGCAAAAAG
AATGTACTTGCTGCCGCAGCGCTAGCCAAGAAGAAGAAGGAGAAGCAGCA
GAAGTTCAAGAAAGAGGAAGCAAAGCGCCTAGCGAAGGAGACCCGGAAGA
AAGAGAAAAAGGAGAGGAGCGAGGAGCGGAAGAAGGCCAAGGCTGCCGCT
GCTGCTGCCGAGCCTATCTCTATCACAGGCCGCAGCGGACGCCGTCGTCG
TGTCATCCCACCCCCACCTCCTTCCTCCTCCTCCTCCTCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCGTCTTCCTCTGA
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Synonyms
Publications