NO24G01440.1, NO24G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01440.1
Unique NameNO24G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr24:385347..386965 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:385347..386965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01440.1 vs.
Match: EWM24347.1 (phytanoyl- dioxygenase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 297.4 bits (760), Expect = 5.300e-77
Identity = 160/298 (53.69%), Postives = 194/298 (65.10%), Query Frame = 0 
Query:    8 AASAAAFKEQMASLQKRSAATL----KLGPPAWLTHPHCTEGPLNADELHSFFHDDSSVVPWHQDAAYLDPESAHTLQVTAWIPFINATARNGCLQVIRGAHRTGKTAKHTCCAGGTWYVQMDMDDASSRLGVNCHDEGEWETCEVPLGSVLFLSNLIPHRSLANSSPDIRWSVDLRWQDANQPTGFWGIKDHVLMRRGSREGGKESEEEENFMVRWDEFLAVDRGKAQSKAAANATHVQE--DEDGK----------EGGKEEVSAAVAAGADELKPVIAGPWMLRWEITNHNAHTA 290
            A+S   + +  A L   +AATL    +L PP +L        P   D   S      SV+P+               QVTAWIP ++A A NGCLQV+R AH++G+TA+HTCC GGTWYV+MD+DDASSRLG++C DE  W+TCEVPLGSVLFLSNLIPHRSL N S  IRWS+DLRWQDA +P GFWGIKD VLMR G +EGG      E ++V WD FLAVDRG+AQS+AAA A    E   + GK          E GK+ V AA AA +D L PVI+GPWMLRW++ +HNAHTA
Sbjct:  171 ASSVVPWHQDAAYLDPEAAATLEVASRLSPPPYL--------PATPD--FSLSSPTPSVLPFSSS------------QVTAWIPLLDANAANGCLQVMRRAHQSGRTARHTCCVGGTWYVEMDLDDASSRLGMDCRDESFWDTCEVPLGSVLFLSNLIPHRSLPNVSAHIRWSIDLRWQDAREPAGFWGIKDMVLMREGGKEGGTR----EGYLVDWDGFLAVDRGEAQSQAAARAKRAGEGGQDGGKVEGREIEGEGESGKDMVLAAAAAASDALTPVISGPWMLRWDLVHHNAHTA 442
The following BLAST results are available for this feature:
BLAST of NO24G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24347.15.300e-7753.69phytanoyl- dioxygenase domain-containing protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01440NO24G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01440.1NO24G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01440.1.cds1NO24G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01440.1.cds2NO24G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01440.1.cds3NO24G01440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01440.1.cds4NO24G01440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01440.1.cds5NO24G01440.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01440.1 ID=NO24G01440.1|Name=NO24G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGTTAGCAGCAGGAGTGATGCGGCCTCCGCAGCGGCTTTCAAGGAGCA
AATGGCATCTCTCCAGAAACGCAGCGCGGCTACCCTGAAACTTGGCCCGC
CCGCTTGGCTCACGCATCCTCATTGCACGGAAGGGCCCTTGAACGCCGAC
GAGCTCCATAGCTTCTTCCACGACGACTCGTCAGTCGTGCCTTGGCATCA
AGACGCGGCGTACCTCGACCCCGAATCCGCACATACTTTGCAGGTCACGG
CATGGATCCCTTTTATCAATGCCACAGCTCGTAATGGCTGTTTGCAAGTG
ATCAGAGGCGCGCACCGCACGGGGAAAACAGCCAAGCATACATGCTGTGC
GGGGGGTACGTGGTATGTGCAGATGGACATGGACGATGCGTCCTCGCGGC
TGGGAGTTAATTGCCACGACGAAGGAGAATGGGAGACATGTGAAGTACCT
TTAGGGTCGGTACTTTTTCTCAGCAATTTGATCCCTCATCGTTCGCTTGC
AAACAGTTCTCCTGACATTCGATGGAGCGTGGACTTACGATGGCAGGACG
CAAACCAACCCACCGGGTTCTGGGGCATTAAAGACCATGTCCTGATGAGG
AGGGGATCGAGGGAGGGAGGGAAGGAGAGCGAGGAGGAGGAGAACTTCAT
GGTGCGTTGGGATGAGTTTCTGGCGGTGGACCGTGGGAAAGCTCAGAGTA
AGGCAGCCGCGAATGCAACACATGTACAGGAGGACGAGGACGGAAAGGAG
GGTGGGAAGGAGGAGGTTTCAGCAGCAGTGGCGGCCGGGGCGGATGAGTT
AAAGCCAGTGATTGCAGGTCCATGGATGCTGCGATGGGAGATTACGAATC
ACAATGCGCACACTGCGGAGTTGGAAGAGGTGGGGGCGGAGGGAGGAGAG
GACGCAGTGCCGGCATCGTGGCATAAGGCGTGA
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protein sequence of NO24G01440.1

>NO24G01440.1-protein ID=NO24G01440.1-protein|Name=NO24G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MVSSRSDAASAAAFKEQMASLQKRSAATLKLGPPAWLTHPHCTEGPLNAD
ELHSFFHDDSSVVPWHQDAAYLDPESAHTLQVTAWIPFINATARNGCLQV
IRGAHRTGKTAKHTCCAGGTWYVQMDMDDASSRLGVNCHDEGEWETCEVP
LGSVLFLSNLIPHRSLANSSPDIRWSVDLRWQDANQPTGFWGIKDHVLMR
RGSREGGKESEEEENFMVRWDEFLAVDRGKAQSKAAANATHVQEDEDGKE
GGKEEVSAAVAAGADELKPVIAGPWMLRWEITNHNAHTAELEEVGAEGGE
DAVPASWHKA*
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mRNA from alignment at chr24:385347..386965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01440.1 ID=NO24G01440.1|Name=NO24G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp|location=Sequence derived from alignment at chr24:385347..386965- (Nannochloropsis oceanica)
ATGGTTAGCAGCAGGAGTGATGCGGCCTCCGCAGCGGCTTTCAAGGAGCA
AATGGCATCTCTCCAGAAACGCAGCGCGGCTACCCTGAAACTTGGCCCGC
CCGCTTGGCTCACGCATCCTCATTGCACGGAAGGGCCCTTGAACGCCGAC
GAGGCAGGTTACTACGGAAAGAGAGGAAGTGATCCCGGTGCATATTTTTA
GTCGAAGCTCGTAACCTCCTCTCTATCTCTCTCGCACCTCTCATGTGACA
GCTCCATAGCTTCTTCCACGACGGTTTTCTCATCAAACATGGCCTCTTTG
CCCCCGCCGAGCTTCGACCTGTCATGAACGACATCGAAAAACAAGTCGAC
TCCCTAGCGTCCACCCTTCTCTCTGCCGGGCTGATCGCCGACTCTGCCCC
TTCCCTCGGATTCTACCAGCGCATGGCAGCTCTCGAGAAGCAATTTCCAG
GGGCCAGCGTCCTCTTGCACAAGACACCCGCCCTTCCTCCATCCTTCCAA
TCGCTCTGGACTGACAATCGCTTGCTTGATATCGCGCAGCAATTGTTGGG
GGTCGGGATATAGATGTGGCTGGTCACCCTGTCTGGAATTTACGCGTTAA
AGTGCCACAAACAGACTCGTCAGTCGTGCCTTGGCATCAAGACGCGGCGT
ACCTCGACCCCGAATCCGCACATACTTTGCAGGTAGGCTAGTGCTCCTTC
CTTTCCTTCCGCCCCTCCTACCTTCTATTATTTCCCCTTTTCTCAGTCGT
GTCGATGTCCTCCCTCCCTCCCTCTCTCCTTCCCTCTCTCCCTCCCTCCC
TCTCTGCATAGGTCACGGCATGGATCCCTTTTATCAATGCCACAGCTCGT
AATGGCTGTTTGCAAGTGATCAGAGGCGCGCACCGCACGGGGAAAACAGC
CAAGCATACATGCTGTGCGGGGGGTACGTGGTATGTGCAGATGGACATGG
ACGATGCGTCCTCGCGGCTGGGAGTTAATTGCCACGACGAAGGAGAATGG
GAGACATGTGAAGTACCTTTAGGGTCGGTACTTTTTCTCAGGTACAGCTT
ATTTTTTCGATTGTTTATTTTCTCTTCTCCCCTGCAGCCAGCAAGCTTAC
ACTTCCTCCCTTTCCTTCCTCCCTCCCACCCCCCATTCCTCCCTCTCTCC
CTCCTTCAGCAATTTGATCCCTCATCGTTCGCTTGCAAACAGTTCTCCTG
ACATTCGATGGAGCGTGGACTTACGATGGCAGGACGCAAACCAACCCACC
GGGTTCTGGGGCATTAAAGACCATGTCCTGATGAGGAGGGGATCGAGGGA
GGGAGGGAAGGAGAGCGAGGAGGAGGAGAACTTCATGGTGCGTTGGGATG
AGTTTCTGGCGGTGGACCGTGGGAAAGCTCAGAGTAAGGCAGCCGCGAAT
GCAACACATGTACAGGAGGACGAGGACGGAAAGGAGGGTGGGAAGGAGGA
GGTTTCAGCAGCAGTGGCGGCCGGGGCGGATGAGTTAAAGCCAGTGATTG
CAGGTCCATGGATGCTGCGATGGGAGATTACGAATCACAATGCGCACACT
GCGGAGTTGGAAGAGGTGGGGGCGGAGGGAGGAGAGGACGCAGTGCCGGC
ATCGTGGCATAAGGCGTGA
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Coding sequence (CDS) from alignment at chr24:385347..386965-

>NO24G01440.1 ID=NO24G01440.1|Name=NO24G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr24:385347..386965- (Nannochloropsis oceanica)
ATGGTTAGCAGCAGGAGTGATGCGGCCTCCGCAGCGGCTTTCAAGGAGCA
AATGGCATCTCTCCAGAAACGCAGCGCGGCTACCCTGAAACTTGGCCCGC
CCGCTTGGCTCACGCATCCTCATTGCACGGAAGGGCCCTTGAACGCCGAC
GAGCTCCATAGCTTCTTCCACGACGACTCGTCAGTCGTGCCTTGGCATCA
AGACGCGGCGTACCTCGACCCCGAATCCGCACATACTTTGCAGGTCACGG
CATGGATCCCTTTTATCAATGCCACAGCTCGTAATGGCTGTTTGCAAGTG
ATCAGAGGCGCGCACCGCACGGGGAAAACAGCCAAGCATACATGCTGTGC
GGGGGGTACGTGGTATGTGCAGATGGACATGGACGATGCGTCCTCGCGGC
TGGGAGTTAATTGCCACGACGAAGGAGAATGGGAGACATGTGAAGTACCT
TTAGGGTCGGTACTTTTTCTCAGCAATTTGATCCCTCATCGTTCGCTTGC
AAACAGTTCTCCTGACATTCGATGGAGCGTGGACTTACGATGGCAGGACG
CAAACCAACCCACCGGGTTCTGGGGCATTAAAGACCATGTCCTGATGAGG
AGGGGATCGAGGGAGGGAGGGAAGGAGAGCGAGGAGGAGGAGAACTTCAT
GGTGCGTTGGGATGAGTTTCTGGCGGTGGACCGTGGGAAAGCTCAGAGTA
AGGCAGCCGCGAATGCAACACATGTACAGGAGGACGAGGACGGAAAGGAG
GGTGGGAAGGAGGAGGTTTCAGCAGCAGTGGCGGCCGGGGCGGATGAGTT
AAAGCCAGTGATTGCAGGTCCATGGATGCTGCGATGGGAGATTACGAATC
ACAATGCGCACACTGCGGAGTTGGAAGAGGTGGGGGCGGAGGGAGGAGAG
GACGCAGTGCCGGCATCGTGGCATAAGGCGTGA
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Synonyms
Publications