NO24G01000.1, NO24G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01000.1
Unique NameNO24G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr24:276476..278850 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:276476..278850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01000.1 vs.
Match: EWM21085.1 (thioesterase [Nannochloropsis gaditana])

HSP 1 Score: 280.0 bits (715), Expect = 5.700e-72
Identity = 141/196 (71.94%), Postives = 160/196 (81.63%), Query Frame = 0 
Query:    1 MGYLPPSASSPNASSSSSNSAKPLLLFGHSFGAMLATHLAQALRDRDEARRGKGREEKVVEVPLVVLSGMAPLDARGGSTGVSKMSDDGMIDYLVEMGGIPFEVASNRELMNIFLPAFRGDYTAIDNYTYSPFPPLPFRLICFAGAEDARADKGIMEGWKKFTSHVEEFAVEVFPGGHFFIKEHTSLVLERLGKRV 197
            +GYLP SA S   SS+S    KPLLLFGHSFGAML THLAQALR+R E       E K V+VPLV++SGMAPLD RGGSTGVS MSDD MI YLV+MGGIP EVA++RELMN+FLPAFRGDYTAIDNY Y+P P LPFRL+ FAG  DARA K IMEGW K T+H ++FAV+VFPGGHFFIKEHTS+VLER+G+RV
Sbjct:  132 VGYLPSSAPSFLPSSTSPPPLKPLLLFGHSFGAMLVTHLAQALRERRED------EGKSVDVPLVLVSGMAPLDKRGGSTGVSAMSDDAMIQYLVKMGGIPSEVAASRELMNVFLPAFRGDYTAIDNYVYTPLPALPFRLVAFAGENDARASKEIMEGWVKMTTHEKDFAVDVFPGGHFFIKEHTSMVLERIGQRV 321
The following BLAST results are available for this feature:
BLAST of NO24G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21085.15.700e-7271.94thioesterase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01000NO24G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01000.1NO24G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01000.1.cds1NO24G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01000.1.cds2NO24G01000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01000.1.cds3NO24G01000.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01000.1.cds4NO24G01000.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01000.1 ID=NO24G01000.1|Name=NO24G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
GACGACACTGCAACTTGCTTCTCTGCCGGACCGTTTACACTAGGACACAA
TATCGCCAACAAACACCCTGCCACATCCCACGAAGCTTCTGCGGATCGGA
CCCGGCCTACGCCGCTCTGTGCCCTATAGGAAGAAACGCCCCCTTTATGG
CAATGTGGTGTAGGTGGTGCCGCCGCTGAGGGTGCTTGGTGGATTTCGCC
TTCTCACTTACCCGTCCTTCGGCCCCCTCCCTCCCTCACTCTTGCTCCCT
CCCCGCTATACCAGGCCATAAATATGGGCAACAGGCAGGCAGGAAATAGA
GGGTCCAAAGCAGTGCCGCCGCCCTGTTGCGTCCGCCCTGGTGGCTGCAC
TGCCTCCGCACCCGCCGTCCCACCTTTGACCAGCACCAACGGTTCAGGCA
TCACTACCAATCAAGCAAGCATGCAGGGCCCTCCCATGCCCCTCAGCGAG
GCCAAGCGATGGTTCGTATGCCGCGCTCCTAAGCCCCAAGCCAAGTACCG
GTACGTTTATGTAAAGAGAAGATGGTTTGTTAGGCAAATTGAGAGCGGCA
TTGTATAGGCATGATGAGGGGACCAGCAAGCATTTCCCTCATCGAATGAC
CACTTCCGTTTCTCGACGGCGACTCTCTTACTGGTTTCCAGGCTGACGGC
CGTTGCAGAAAAGTTCTTTGAACCGCTAAGCTGCCAACATACCTCTCACC
TTGACATTGTCGCCATTCTCTCCTCCCTCCCATCGCCCTGCCCCACATAT
GCTCACCGAACTCAGCATGATCTGCCTTGCCTGGGCGGGTGGGAACTCTA
CCATCTACCGCAGCTGGGATCTGGGCCCTGACATCGAGACGGTTGCTGTT
GAATTACCAGGACGAAATGCGTGAGTCCAGGGCTCGCCCTCTTTTCCCTC
CACGTCTCGTCTCGTCCAAGGCCATCTTTATTACTTCTTTCCTCCCCGCC
GTAACCCCCGTCCTTTTCCACTTTCTTTGTCCCAACCCCTACCTGATACT
AGCCGCATCCAAGAGACGCCTTTGAAAAATTTCGAGGTCATCGTCGCTCG
CATCGTCCAAGCGCTCGACGTGATGGGCTACCTGCCTCCCTCTGCCTCCT
CTCCCAATGCCTCCTCCTCTTCCTCCAACAGCGCCAAGCCCCTCCTCCTC
TTCGGCCACTCCTTTGGCGCGATGCTTGCTACGCACCTCGCCCAGGCCTT
GAGAGACCGGGATGAGGCCCGGAGGGGAAAAGGGAGGGAGGAAAAGGTAG
TGGAGGTACCGCTGGTGGTGCTTTCGGGCATGGCGCCATTGGACGCCCGG
GGCGGCTCCACGGGTGTTTCTAAAATGAGCGACGACGGCATGATCGACTA
CCTGGTCGAGATGGGCGGGATTCCTTTCGAGGTGGCCTCCAACCGGGAGC
TGATGAACATCTTCCTGCCCGCCTTCCGGGGAGACTACACTGCCATTGAT
AACTACACTTATTCCCCTTTTCCTCCACTCCCTTTCCGCCTTATCTGCTT
CGCCGGCGCCGAGGATGCCCGCGCCGACAAGGGAATTATGGAGGGGTGGA
AGAAGTTCACTTCTCACGTGGAAGAGTTCGCGGTGGAAGTCTTTCCTGGG
GGGCATTTCTTCATCAAGGAACACACGAGCTTGGTGTTGGAGAGGTTGGG
AAAGAGGGTTGGGGCATTGGGGTGAGAAGGTCAACGAAGGAGTGAGGAAG
GAAATCACGGTTTCCCCGGAGAAAATGAAATGAAAGTTGTCAAAATGATA
AACAAACTCAGGC
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protein sequence of NO24G01000.1

>NO24G01000.1-protein ID=NO24G01000.1-protein|Name=NO24G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MGYLPPSASSPNASSSSSNSAKPLLLFGHSFGAMLATHLAQALRDRDEAR
RGKGREEKVVEVPLVVLSGMAPLDARGGSTGVSKMSDDGMIDYLVEMGGI
PFEVASNRELMNIFLPAFRGDYTAIDNYTYSPFPPLPFRLICFAGAEDAR
ADKGIMEGWKKFTSHVEEFAVEVFPGGHFFIKEHTSLVLERLGKRVGALG
*
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mRNA from alignment at chr24:276476..278850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01000.1 ID=NO24G01000.1|Name=NO24G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp|location=Sequence derived from alignment at chr24:276476..278850+ (Nannochloropsis oceanica)
GACGACACTGCAACTTGCTTCTCTGCCGGACCGTTTACACTAGGACACAA
TATCGCCAACAAACACCCTGCCACATCCCACGAAGCTTCTGCGGATCGGA
CCCGGCCTACGCCGCTCTGTGCCCTATAGGAAGAAACGCCCCCTTTATGG
CAATGTGGTGTAGGTGGTGCCGCCGCTGAGGGTGCTTGGTGGATTTCGCC
TTCTCACTTACCCGTCCTTCGGCCCCCTCCCTCCCTCACTCTTGCTCCCT
CCCCGCTATACCAGGCCATAAATATGGGCAACAGGCAGGCAGGAAATAGA
GGGTCCAAAGCAGTGCCGCCGCCCTGTTGCGTCCGCCCTGGTGGCTGCAC
TGCCTCCGCACCCGCCGTCCCACCTTTGACCAGCACCAACGGTTCAGGCA
TCACTACCAATCAAGCAAGCATGCAGGGCCCTCCCATGCCCCTCAGCGAG
GCCAAGCGATGGTTCGTATGCCGCGCTCCTAAGCCCCAAGCCAAGTACCG
GTACGTTTATGTAAAGAGAAGATGGTTTGTTAGGCAAATTGAGAGCGGCA
TTGTATAGGCATGATGAGGGGACCAGCAAGCATTTCCCTCATCGAATGAC
CACTTCCGTTTCTCGACGGCGACTCTCTTACTGGTTTCCAGGCTGACGGC
CGTTGCAGAAAAGTTCTTTGAACCGCTAAGCTGCCAACATACCTCTCACC
TTGACATTGTCGCCATTCTCTCCTCCCTCCCATCGCCCTGCCCCACATAT
GCTCACCGAACTCAGCATGATCTGCCTTGCCTGGGCGGGTGGGAACTCTA
CCATCTACCGCAGCTGGGATCTGGGCCCTGACATCGAGACGGTTGCTGTT
GAATTACCAGGACGAAATGCGTGAGTCCAGGGCTCGCCCTCTTTTCCCTC
CACGTCTCGTCTCGTCCAAGGCCATCTTTATTACTTCTTTCCTCCCCGCC
GTAACCCCCGTCCTTTTCCACTTTCTTTGTCCCAACCCCTACCTGATACT
AGCCGCATCCAAGAGACGCCTTTGAAAAATTTCGAGGTCATCGTCGCTCG
CATCGTCCAAGCGCTCGACGTGATGGGCTACCTGCCTCCCTCTGCCTCCT
CTCCCAATGCCTCCTCCTCTTCCTCCAACAGCGCCAAGCCCCTCCTCCTC
TTCGGCCACTCCTTTGGCGCGATGCTTGCTACGCACCTCGCCCAGGCCTT
GAGAGACCGGGATGAGGCCCGGAGGGGAAAAGGGAGGGAGGAAAAGGTAG
TGGAGGTACCGCTGGTGGTGCTTTCGGGCATGGCGCCATTGGACGTACGT
ATGCAATTGTTTCCTTTGACTTGCTATGTCCGTGTCCGTCCCGTCCTACC
TCCTTGCCTTCCGTTATAGCCCAGGCACGCTCTCCCACGTCTTTGGAAGG
CGCTTTCCCATCCGCTCACGTATCTTTCCGCACCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTTCTCATTCCCTCCCTCCCTCCCTCCCCTCATACAGGCC
CGGGGCGGCTCCACGGGTGTTTCTAAAATGAGCGACGACGGCATGATCGA
CTACCTGGTCGAGATGGGCGGGGTGAGTGCTGCAGGACACCCATTTCCTC
CTTCCCTGCCATCATTTCTCCTGTCATTCCTCCCCGCGTACCTCTATGAT
ATGTGCGAGACGGGTAATAGCGGCGGCTTCGCCTCGGTCCTCGCTTGGCG
GGCAAAAGAGTCTTCTCTCACTCTCGCCTTCCGCCACTCCCTCCCTTTCT
CCCTCTTGCCCTCCTTCTCACTTTCACCTTTCTGATGCAGATTCCTTTCG
AGGTGGCCTCCAACCGGGAGCTGATGAACATCTTCCTGCCCGCCTTCCGG
GGAGACTACACTGCCATGTAAGCTCGCCCGCCCGCCCTCCCGCCTCTTCC
CTTTCCTCTTTCCCTCCCTAGGCTTCACGTGTAGGTCTAGGACTTACTCG
CGTCGCGTTTACCGGGGCTGTAAGGGCAAGCGTGTCCCTGGAAAGAAAAC
CGATCACACAATCCTCATTTTTTCCATCCCCTCCCTCTCCCCTTCCTCCC
TCCAACAGTGATAACTACACTTATTCCCCTTTTCCTCCACTCCCTTTCCG
CCTTATCTGCTTCGCCGGCGCCGAGGATGCCCGCGCCGACAAGGGAATTA
TGGAGGGGTGGAAGAAGTTCACTTCTCACGTGGAAGAGTTCGCGGTGGAA
GTCTTTCCTGGGGGGCATTTCTTCATCAAGGAACACACGAGCTTGGTGTT
GGAGAGGTTGGGAAAGAGGGTTGGGGCATTGGGGTGAGAAGGTCAACGAA
GGAGTGAGGAAGGAAATCACGGTTTCCCCGGAGAAAATGAAATGAAAGTT
GTCAAAATGATAAACAAACTCAGGC
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Coding sequence (CDS) from alignment at chr24:276476..278850+

>NO24G01000.1 ID=NO24G01000.1|Name=NO24G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr24:276476..278850+ (Nannochloropsis oceanica)
ATGGGCTACCTGCCTCCCTCTGCCTCCTCTCCCAATGCCTCCTCCTCTTC
CTCCAACAGCGCCAAGCCCCTCCTCCTCTTCGGCCACTCCTTTGGCGCGA
TGCTTGCTACGCACCTCGCCCAGGCCTTGAGAGACCGGGATGAGGCCCGG
AGGGGAAAAGGGAGGGAGGAAAAGGTAGTGGAGGTACCGCTGGTGGTGCT
TTCGGGCATGGCGCCATTGGACGCCCGGGGCGGCTCCACGGGTGTTTCTA
AAATGAGCGACGACGGCATGATCGACTACCTGGTCGAGATGGGCGGGATT
CCTTTCGAGGTGGCCTCCAACCGGGAGCTGATGAACATCTTCCTGCCCGC
CTTCCGGGGAGACTACACTGCCATTGATAACTACACTTATTCCCCTTTTC
CTCCACTCCCTTTCCGCCTTATCTGCTTCGCCGGCGCCGAGGATGCCCGC
GCCGACAAGGGAATTATGGAGGGGTGGAAGAAGTTCACTTCTCACGTGGA
AGAGTTCGCGGTGGAAGTCTTTCCTGGGGGGCATTTCTTCATCAAGGAAC
ACACGAGCTTGGTGTTGGAGAGGTTGGGAAAGAGGGTTGGGGCATTGGGG
TGA
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Synonyms
Publications