NO24G00900.1, NO24G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00900.1
Unique NameNO24G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr24:248622..250610 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:248622..250610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00900.1 vs.
Match: CBJ30375.1 (ubiquitin-conjugating enzyme 1 [Ectocarpus siliculosus])

HSP 1 Score: 259.2 bits (661), Expect = 1.100e-65
Identity = 135/212 (63.68%), Postives = 154/212 (72.64%), Query Frame = 0 
Query:    2 GDFSRIRKELNECARDQKSGVTASPVGSSLNHLSGTITGPDGTPYAKGVFKIDIHIPTSYPFEPPKMKFLTKIWHPNISSQSGAICLDILKDQWSPALTIKTALISLQALLCTPQPDDPQDAEVASMYLNNQEQFLHTAKFWTETYARPEASHDEVCEKGEEEKREGEGEFRTFGNLVVDRLKDMGFSETAARKALEDSNWDETAAVNALLS 214
            GD  RIRKEL ECARD  SGVTA P G SL  L GTI GP GTP+  G F I+I IP+ YPFEPPKMKF TKIWHPNISSQ+GAICLDILKDQWSPALTIKTAL+SLQAL+C+P+PDDPQDAEVA+MY  N++ +  TAKFWTETYA       +V + G  E              VV R+ DMGF E  AR+AL  ++WDETAA+N LLS
Sbjct:  164 GDAGRIRKELAECARDTDSGVTAVPKGDSLARLEGTILGPVGTPFEGGTFLINIDIPSGYPFEPPKMKFATKIWHPNISSQTGAICLDILKDQWSPALTIKTALLSLQALMCSPEPDDPQDAEVANMYKINRDTYNQTAKFWTETYA-------QVRDPGGNED-------------VVRRVCDMGFPEAQARRALASNDWDETAAINTLLS 355
The following BLAST results are available for this feature:
BLAST of NO24G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30375.11.100e-6563.68ubiquitin-conjugating enzyme 1 [Ectocarpus silicul... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00900NO24G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00900.1NO24G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00900.1.cds1NO24G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00900.1.cds2NO24G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00900.1.cds3NO24G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00900.1.cds4NO24G00900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00900.1.cds5NO24G00900.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00900.1 ID=NO24G00900.1|Name=NO24G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
CAAACACACAGGCAAGGGACGGATCCAAACGCTTGTGGCAGGGCCCCATC
CCCCGCTCCGCCACTTCTTCGGCTGCCCCACTCTCTGCGTCCTGCCCAAG
CACGCGAATACCTCATCCCACCCCCTTCATCTCTCGCTCTTACGCCCGTA
AGCCCTCGCGGAAACAGCAGCAGCCACAGCAGCAGCACAACTTTCCTATT
CCTAAGTCCCTAGACACATAATCATGGGTGATTTTTCACGCATTCGGAAG
GAGTTGAATGAGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAGTCC
AGTAGGCTCGAGCTTGAACCATTTGTCCGGGACCATCACGGGGCCCGACG
GTACGCCGTACGCCAAAGGCGTCTTCAAAATTGACATCCACATCCCAACC
TCCTACCCCTTCGAGCCGCCCAAGATGAAGTTCCTGACCAAGATATGGCA
CCCTAACATATCTTCGCAGTCCGGCGCCATATGCCTGGATATCCTGAAAG
ACCAGTGGTCGCCCGCCCTCACCATCAAAACTGCCCTCATCTCCCTACAA
GCCCTACTCTGTACTCCCCAGCCGGACGACCCTCAAGACGCGGAGGTGGC
GTCGATGTACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCT
GGACAGAGACGTATGCCAGACCCGAGGCCTCCCACGACGAGGTGTGTGAA
AAGGGGGAGGAGGAAAAGAGGGAGGGAGAGGGCGAATTTCGGACGTTTGG
AAATTTGGTGGTGGATCGCCTGAAAGACATGGGATTCTCTGAGACGGCGG
CGCGAAAGGCCCTGGAAGACAGCAACTGGGACGAGACGGCTGCAGTAAAT
GCATTGCTGAGCAGCTAAAGGATAGGTAAAGGAAGGAAGGCCAGAAGAAG
ACAAGAGGACGAGAAAGGTAGTGCTAGGATTATGGCAAGAATGGAAAAAA
AGTGGAATCGGATACACAAGAAAGATCTGAAAGAGTGTGAAGGGAAAATG
ATGCAGCGACAGATGGTCAGGAACAGCGCATGTGTTTATATGATAAAGAG
AAGAGAAGCGTCAGCAGTAGAAGTAGAAAAGAGATAGAGAGTCCGCAATA
ACAGCAAAGCCATAAGTGTGAGCGCGAGTGACTGTGTCTTTTGTAGGGAT
CGTCTTTTCAGTAAAAGAATCAAGCAGCATCGGAGGGGCACGCCAAATCT
ATCTATGTATACCGC
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protein sequence of NO24G00900.1

>NO24G00900.1-protein ID=NO24G00900.1-protein|Name=NO24G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MGDFSRIRKELNECARDQKSGVTASPVGSSLNHLSGTITGPDGTPYAKGV
FKIDIHIPTSYPFEPPKMKFLTKIWHPNISSQSGAICLDILKDQWSPALT
IKTALISLQALLCTPQPDDPQDAEVASMYLNNQEQFLHTAKFWTETYARP
EASHDEVCEKGEEEKREGEGEFRTFGNLVVDRLKDMGFSETAARKALEDS
NWDETAAVNALLSS*
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mRNA from alignment at chr24:248622..250610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00900.1 ID=NO24G00900.1|Name=NO24G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at chr24:248622..250610- (Nannochloropsis oceanica)
CAAACACACAGGCAAGGGACGGATCCAAACGCTTGTGGCAGGGCCCCATC
CCCCGCTCCGCCACTTCTTCGGCTGCCCCACTCTCTGCGTCCTGCCCAAG
CACGCGAATACCTCATCCCACCCCCTTCATCTCTCGCTCTTACGCCCGTA
AGCCCTCGCGGAAACAGCAGCAGCCACAGCAGCAGCACAACTTTCCTATT
CCTAAGTCCCTAGACACATAATCATGGGTGATTTTTCACGCATTCGGAAG
GAGTTGAATGAGTGCGCCCGCGACCAAAAGTCAGGCGTCACGGCTAGGTA
GGTGGATGGGTTCAAGAGCATTGCATTTGAAGCTTGGGGTTTAACATGAA
AAATAGGGGAGTCTGAGATGATGTGCAGTCCCTGTTAATGCGATAACAAG
CAATCATGCTGCCCGTGGGTCCTCCTTCCTCTTTCTCTGGTGAAGGGAGC
GTACGTGCTCGGTGGGACAAATCGCACTGAAACGCACTTCTAAATGCATA
ACTCCTTCCAGAAAAGCTCATGGTAAGCATTCCCCACTCTCCACCTTTTC
TCCTGGAAATGGTCATTCCCACCAACAGTCCAGTAGGCTCGAGCTTGAAC
CATTTGTCCGGGACCATCACGGGGCCCGACGGTACGCCGTACGCCAAAGG
CGTCTTCAAAATTGACATCCACATCCCAACCTCCTACCCCTTCGAGCCGC
CCAAGATGAAGTTCCTGACCAAGATATGGTGCGTGGACAGAGCAGAGACA
CAGAAGGAGTGTCAGAGGCGGAGACATAGTAGAAGGGGAAGAGGGAAATG
TTGGGAAGGCCTTTCGTTGGGGGATGTTTTGGACCACTTTTTCTTCCTCT
GAGTCCGAGTTGCCCATAACTTCCCCCCTCTCGCTTCCCATCCTCCCTCC
TCCCTCCCTCCCTCCCTGGCAGGCACCCTAACATATCTTCGCAGTCCGGC
GCCATATGCCTGGATATCCTGAAAGACCAGTGGTCGCCCGCCCTCACCAT
CAAAACTGCCCTCATCTCCCTACAAGCCCTACTCTGTACTCCCCAGCCGG
TAAGGACGGAGGAGGAAGGAGGGATGGGTGCAAGGGCGGGATCGTGGTAA
GGTGACATAAGATTCTTCAAGGCGAAGGGAAACTTTGAGAGCCCAGGGAA
CACCGGCATGCCAGCTCTTCCTCATTGCATTTGCTCTCGGCCCCGTCTCA
CCATCCCCATGTTCGCATCGCAGGACGACCCTCAAGACGCGGAGGTGGCG
TCGATGTACCTGAACAACCAGGAGCAGTTTCTGCACACAGCCAAGTTCTG
GACAGAGACGTATGCCAGACCCGAGGCCTCCCACGACGAGGTGTGTGAAA
AGGGGGAGGAGGAAAAGAGGGAGGGAGAGGGCGAATTTCGGACGTTTGGA
AATTTGGTAGGTCCTGCGAGAACCTTTGGCAATTTAGCCCATTATCTTAT
GACGATGATGAAGGCCTTGAGCTTTCTCTGACAATAGAGTGAACTCTCTC
ACGTCTCTGCTTCCCTCCCTCTCGCTTGCAGGTGGTGGATCGCCTGAAAG
ACATGGGATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGACAGCAAC
TGGGACGAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAAAGGATAGG
TAAAGGAAGGAAGGCCAGAAGAAGACAAGAGGACGAGAAAGGTAGTGCTA
GGATTATGGCAAGAATGGAAAAAAAGTGGAATCGGATACACAAGAAAGAT
CTGAAAGAGTGTGAAGGGAAAATGATGCAGCGACAGATGGTCAGGAACAG
CGCATGTGTTTATATGATAAAGAGAAGAGAAGCGTCAGCAGTAGAAGTAG
AAAAGAGATAGAGAGTCCGCAATAACAGCAAAGCCATAAGTGTGAGCGCG
AGTGACTGTGTCTTTTGTAGGGATCGTCTTTTCAGTAAAAGAATCAAGCA
GCATCGGAGGGGCACGCCAAATCTATCTATGTATACCGC
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Coding sequence (CDS) from alignment at chr24:248622..250610-

>NO24G00900.1 ID=NO24G00900.1|Name=NO24G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr24:248622..250610- (Nannochloropsis oceanica)
ATGGGTGATTTTTCACGCATTCGGAAGGAGTTGAATGAGTGCGCCCGCGA
CCAAAAGTCAGGCGTCACGGCTAGTCCAGTAGGCTCGAGCTTGAACCATT
TGTCCGGGACCATCACGGGGCCCGACGGTACGCCGTACGCCAAAGGCGTC
TTCAAAATTGACATCCACATCCCAACCTCCTACCCCTTCGAGCCGCCCAA
GATGAAGTTCCTGACCAAGATATGGCACCCTAACATATCTTCGCAGTCCG
GCGCCATATGCCTGGATATCCTGAAAGACCAGTGGTCGCCCGCCCTCACC
ATCAAAACTGCCCTCATCTCCCTACAAGCCCTACTCTGTACTCCCCAGCC
GGACGACCCTCAAGACGCGGAGGTGGCGTCGATGTACCTGAACAACCAGG
AGCAGTTTCTGCACACAGCCAAGTTCTGGACAGAGACGTATGCCAGACCC
GAGGCCTCCCACGACGAGGTGTGTGAAAAGGGGGAGGAGGAAAAGAGGGA
GGGAGAGGGCGAATTTCGGACGTTTGGAAATTTGGTGGTGGATCGCCTGA
AAGACATGGGATTCTCTGAGACGGCGGCGCGAAAGGCCCTGGAAGACAGC
AACTGGGACGAGACGGCTGCAGTAAATGCATTGCTGAGCAGCTAA
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Synonyms
Publications