NO24G00790.1, NO24G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00790.1
Unique NameNO24G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr24:227300..229162 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:227300..229162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00790NO24G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00790.1NO24G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00790.1.cds1NO24G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00790.1.cds2NO24G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00790.1.cds3NO24G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00790.1 ID=NO24G00790.1|Name=NO24G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGGCCACCGTTCGCGAGATGATGGCGCGGCTTCGATCCCCAAGTGCTAC
GTCCCGAGAAGAGCGCAACCGTCAAAGGCGCGGAGGTGCGCTCCGTGAGA
TGTGGTACATTATACGGCAAGCAGAACAGGCTCGTGGTTACGGTCACTTG
GACGACGAGCGTTTGGTAGGGATCGAGGAGGAGGAGGAAGAGGTGGAGGA
GCTGGAGGACGAGGGAGGAAAGCATGCTGCCTCTTTACCGACATCGACAA
GCACGGGGAGACCTCCACTGTCCTATTTATCTCTGCGCATGACCCTACCC
CCGCTGAATCCATCACCGCTTCGAAACGTGGCGCACAGGGAAAGGGAGGA
GGAGAGGAAGATGAAAGAAAAGAGGGAGGAGAAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGCAGGATCAGGAGGAGGAGGAGCAG
GATCTGGAGGAGCAGGAGGAGCACAAGGAGCAGGAGGAAGCGCTAGAACA
TGGGGCCGAGATCGATGTTGAGCATAAATATGTACCTTTGACAGTACCGC
AGTCATCCTCCACCCAGCAGAATGCCCGACAGGAGCCGAAAGAGGTGGTG
GAAGAAGAATTGGATATGATGGAGGAAGAGGAGGTGAAGGAGGAGGATGA
GGAGCGAGTGGCAAACGAGAGGCCACAAGAAGGGAGGGATGGATTTATGA
TGTCTGCTTGTAACCGCGTATCCAGCTCCTTGCATGTGACTTTTCGGGGA
ATCATCACAGACCTAGAGGCATCCATGGCCGGTCTCCGAGAGCGCATGGG
CGTCGAGAAGGAAACATTTGAGCCTCATTCAGTACCTGCTCCTCCTGCTC
CGCCCCTCCTCCCCAGCCCGGTCAACCGGGGGCCATGGGGCGGGGGCGAG
GAGGAGCAGAAGCGCGTAGCCTCCAGCAGTCTTGCTGATGAACGAGACAC
GACAAATGCCAGTAGCAGCACCAGCAACAATAGCAGCACAAGCAACACAA
GCAGAACCAGCACCACCACCAGCACGAACACCAGTCGACATAGGGGCAGG
CCCTCTCTAGTCTACGCCAAAAGCTTGCTCGAGGCGTTTCGCGAGTTCAG
ACGCCTCCATCGGCAAGAGGCCCCTTCCCCCTACTTCGACACCGCATGCT
GCTACGCCTCCTGCGCCCATCCCCCTTCTCCTCCTCCTCCTCCCCCTCGC
CCTCGGCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAACAACAACA
ACAACAACAACAACAACAGTACCATTACCCATTTTCCTACTCTCCTCCAC
CTCATCATCTTCCTCCTTCTTCGTTCCCTCAGCAGCAGCAACACCTCCAT
TTTTACCACCGACCTCCTTGCCCTTGCTACCGCAGCTGCTCTAGAGACGG
ACGAACCGCTCAGCTACGCCGCCGGGCAAACCACAGTACCACCTCCTGCC
CTTCCCACCACTTTCCCGACACGTCTTCCTCTTCCATATTCTCCTCCTCC
TCCTGTTCCATCGCCAGCCATGACAGGGAGTAA
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protein sequence of NO24G00790.1

>NO24G00790.1-protein ID=NO24G00790.1-protein|Name=NO24G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MATVREMMARLRSPSATSREERNRQRRGGALREMWYIIRQAEQARGYGHL
DDERLVGIEEEEEEVEELEDEGGKHAASLPTSTSTGRPPLSYLSLRMTLP
PLNPSPLRNVAHREREEERKMKEKREEKEKEEEEEEEEEEEEQDQEEEEQ
DLEEQEEHKEQEEALEHGAEIDVEHKYVPLTVPQSSSTQQNARQEPKEVV
EEELDMMEEEEVKEEDEERVANERPQEGRDGFMMSACNRVSSSLHVTFRG
IITDLEASMAGLRERMGVEKETFEPHSVPAPPAPPLLPSPVNRGPWGGGE
EEQKRVASSSLADERDTTNASSSTSNNSSTSNTSRTSTTTSTNTSRHRGR
PSLVYAKSLLEAFREFRRLHRQEAPSPYFDTACCYASCAHPPSPPPPPPR
PRQQQQQQQQQQQQQQQQQQQQQYHYPFSYSPPPHHLPPSSFPQQQQHLH
FYHRPPCPCYRSCSRDGRTAQLRRRANHSTTSCPSHHFPDTSSSSIFSSS
SCSIASHDRE*
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mRNA from alignment at chr24:227300..229162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00790.1 ID=NO24G00790.1|Name=NO24G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr24:227300..229162- (Nannochloropsis oceanica)
ATGGCCACCGTTCGCGAGATGATGGCGCGGCTTCGATCCCCAAGTGCTAC
GTCCCGAGAAGAGCGCAACCGTCAAAGGCGCGGAGGTGCGCTCCGTGAGA
TGTGGTACATTATACGGCAAGCAGAACAGGCTCGTGGTTACGGTCACTTG
GACGACGAGCGTTTGGTAGGGATCGAGGAGGAGGAGGAAGAGGTGGAGGA
GCTGGAGGACGAGGGAGGAAAGCATGCTGCCTCTTTACCGACATCGACAA
GCACGGGGAGACCTCCACTGTCCTATTTATCTCTGCGCATGACCCTACCC
CCGCTGAATCCATCACCGCTTCGAAACGTGGCGCACAGGGAAAGGGAGGA
GGAGAGGAAGATGAAAGAAAAGAGGGAGGAGAAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGCAGGATCAGGAGGAGGAGGAGCAG
GATCTGGAGGAGCAGGAGGAGCACAAGGAGCAGGAGGAAGCGCTAGAACA
TGGGGCCGAGATCGATGTTGAGCATAAATATGTACCTTTGACAGTACCGC
AGTCATCCTCCACCCAGCAGAATGCCCGACAGGAGCCGAAAGAGGTGGTG
GAAGAAGAATTGGATATGATGGAGGAAGAGGAGGTGAAGGAGGAGGATGA
GGAGCGAGTGGCAAACGAGAGGCCACAAGAAGGGAGGGATGGATTTATGA
TGTCTGCTTGTAACCGCGTGTAAGTAAATAAGATTTGACGACTTTGGTTA
CACACAAGGTGTCAGCTTCTGAAATCACCTAAAGCCTACCTCTTTCCTTC
TTGCCTCCATTCCTCCCTCCCCCAGATCCAGCTCCTTGCATGTGACTTTT
CGGGGAATCATCACAGACCTAGAGGCATCCATGGCCGGTCTCCGAGAGCG
CATGGGCGTCGAGAAGGAAACATTTGAGCCTCATTCAGTACCTGCTCCTC
CTGCTCCGCCCCTCCTCCCCAGCCCGGTCAACCGGGGGCCATGGGGCGGG
GGCGAGGAGGAGCAGAAGCGCGTAGCCTCCAGCAGTCTTGCTGATGAACG
AGACACGACAAATGCCAGTAGCAGCACCAGCAACAATAGCAGCACAAGCA
ACACAAGCAGAACCAGCACCACCACCAGCACGAACACCAGTCGACATAGG
GGCAGGCCCTCTCTAGTCTACGCCAAAAGCTTGCTCGAGGCGTTTCGCGA
GTTCAGGTAAGGGAGAGGGAGAGAGAGGTGGGAAGTGATGAGGGAAAAGC
AAGGACACAATACATACACGGGCAAGAGCGCTGTGCAGACTTGACATGCA
CGCTCTTTTCTTCTGCTTTCCGAATTGCCGTTCGGGGTTGGAGCACACCG
TATCTTTCTGTCTCTATCCACTGGTTCATGTATCTTACTATTGACATATG
TATGTCTTATTTACATTGACCCTATCCCAGACGCCTCCATCGGCAAGAGG
CCCCTTCCCCCTACTTCGACACCGCATGCTGCTACGCCTCCTGCGCCCAT
CCCCCTTCTCCTCCTCCTCCTCCCCCTCGCCCTCGGCAACAACAACAGCA
GCAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAGT
ACCATTACCCATTTTCCTACTCTCCTCCACCTCATCATCTTCCTCCTTCT
TCGTTCCCTCAGCAGCAGCAACACCTCCATTTTTACCACCGACCTCCTTG
CCCTTGCTACCGCAGCTGCTCTAGAGACGGACGAACCGCTCAGCTACGCC
GCCGGGCAAACCACAGTACCACCTCCTGCCCTTCCCACCACTTTCCCGAC
ACGTCTTCCTCTTCCATATTCTCCTCCTCCTCCTGTTCCATCGCCAGCCA
TGACAGGGAGTAA
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Coding sequence (CDS) from alignment at chr24:227300..229162-

>NO24G00790.1 ID=NO24G00790.1|Name=NO24G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr24:227300..229162- (Nannochloropsis oceanica)
ATGGCCACCGTTCGCGAGATGATGGCGCGGCTTCGATCCCCAAGTGCTAC
GTCCCGAGAAGAGCGCAACCGTCAAAGGCGCGGAGGTGCGCTCCGTGAGA
TGTGGTACATTATACGGCAAGCAGAACAGGCTCGTGGTTACGGTCACTTG
GACGACGAGCGTTTGGTAGGGATCGAGGAGGAGGAGGAAGAGGTGGAGGA
GCTGGAGGACGAGGGAGGAAAGCATGCTGCCTCTTTACCGACATCGACAA
GCACGGGGAGACCTCCACTGTCCTATTTATCTCTGCGCATGACCCTACCC
CCGCTGAATCCATCACCGCTTCGAAACGTGGCGCACAGGGAAAGGGAGGA
GGAGAGGAAGATGAAAGAAAAGAGGGAGGAGAAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGCAGGATCAGGAGGAGGAGGAGCAG
GATCTGGAGGAGCAGGAGGAGCACAAGGAGCAGGAGGAAGCGCTAGAACA
TGGGGCCGAGATCGATGTTGAGCATAAATATGTACCTTTGACAGTACCGC
AGTCATCCTCCACCCAGCAGAATGCCCGACAGGAGCCGAAAGAGGTGGTG
GAAGAAGAATTGGATATGATGGAGGAAGAGGAGGTGAAGGAGGAGGATGA
GGAGCGAGTGGCAAACGAGAGGCCACAAGAAGGGAGGGATGGATTTATGA
TGTCTGCTTGTAACCGCGTATCCAGCTCCTTGCATGTGACTTTTCGGGGA
ATCATCACAGACCTAGAGGCATCCATGGCCGGTCTCCGAGAGCGCATGGG
CGTCGAGAAGGAAACATTTGAGCCTCATTCAGTACCTGCTCCTCCTGCTC
CGCCCCTCCTCCCCAGCCCGGTCAACCGGGGGCCATGGGGCGGGGGCGAG
GAGGAGCAGAAGCGCGTAGCCTCCAGCAGTCTTGCTGATGAACGAGACAC
GACAAATGCCAGTAGCAGCACCAGCAACAATAGCAGCACAAGCAACACAA
GCAGAACCAGCACCACCACCAGCACGAACACCAGTCGACATAGGGGCAGG
CCCTCTCTAGTCTACGCCAAAAGCTTGCTCGAGGCGTTTCGCGAGTTCAG
ACGCCTCCATCGGCAAGAGGCCCCTTCCCCCTACTTCGACACCGCATGCT
GCTACGCCTCCTGCGCCCATCCCCCTTCTCCTCCTCCTCCTCCCCCTCGC
CCTCGGCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAACAACAACA
ACAACAACAACAACAACAGTACCATTACCCATTTTCCTACTCTCCTCCAC
CTCATCATCTTCCTCCTTCTTCGTTCCCTCAGCAGCAGCAACACCTCCAT
TTTTACCACCGACCTCCTTGCCCTTGCTACCGCAGCTGCTCTAGAGACGG
ACGAACCGCTCAGCTACGCCGCCGGGCAAACCACAGTACCACCTCCTGCC
CTTCCCACCACTTTCCCGACACGTCTTCCTCTTCCATATTCTCCTCCTCC
TCCTGTTCCATCGCCAGCCATGACAGGGAGTAA
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Synonyms
Publications