NO24G00460.1, NO24G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00460.1
Unique NameNO24G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1710
Alignment locationchr24:151208..152917 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:151208..152917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00460.1 vs.
Match: EWM24302.1 (las1-like family expressed [Nannochloropsis gaditana])

HSP 1 Score: 500.7 bits (1288), Expect = 5.300e-138
Identity = 296/529 (55.95%), Postives = 349/529 (65.97%), Query Frame = 0 
Query:    1 MEYTPRVLPWQDWAEWTETSKWLFSPDTDSRLRGVGRVKAWRARGRLPVAIDATASLLEVALLE---SGLNGSRSALELRNLYGMVITRAINGLVEGLQTKFYAEPVNAVAARLGISQWLVDLRHEATHASLPSLATLRMGAQHLLDWLYRGYWEKQAHDLESAAAAATYILVSYKNVALAAQEESPNALCRACRAPKEKGVGNGNGSNGSSGNSSSSSSSSSSISGGGGIKTASDARLAEALDGLLASVTPSFVTTFLLPALV-----RISPEESSSSSSSPETSFFLLPDHHLEAEAAAVAASAVSTKPTTFPTTILHTPPEIKAMHEAKHRQLYAPLLIRLQRKFPGFAHSLFSRLAAT--GMVQCREGKRVTVGEEEKAARTAESEAAAEEGGVTSPPSPTTSPFPYTYSMWLSYLRSKDWHSHFAYGRSEALFALRRAPGIRFNLRDKAQGSWTSAEREYMCSPACLPVQTQGLGLGPWVG-------VGEEEVEEEKGEEGEEEGWVRCKEWMPCPLGGPILR 513
            M  TPRVLPWQDWAEWTETS  LFS D + R++GVGRVKAWRARGRLPVA+DATA++LEV LL+   +  N  RS  ELR LY MV+ RAINGLVEG QTKFYAEPV+AVAARLGI QWLVDLRHEATHASLPSL+ LRMGAQHLLDWL+RGYWEKQ  DLE AAAAA  +L++Y++VALA QEE PNAL RACR  +E       GS                    GGI+TASD  LAEAL  LL SVTPSF+TTFLLPALV     R+  ++    SS  E   FLLPD  LE  A+ V A   ST+        L    E+K +   KHR+LY PLL+RLQR+FP FA SLF RL +   G ++ R       G E + AR  E+   +     +S P+P       T+ MW+SYL+S+DWHSHF YGR+EA F LRRA GIRFNLRDKA  SWT+AE ++M S A   V  +GLGLG  VG        G E  E  +G  G +EGW  C+EW+P PLGGP++R
Sbjct:   10 MNTTPRVLPWQDWAEWTETSNLLFSIDIERRVQGVGRVKAWRARGRLPVAVDATAAILEVGLLDVHPNSTNSVRSPTELRYLYSMVLVRAINGLVEGCQTKFYAEPVHAVAARLGIPQWLVDLRHEATHASLPSLSALRMGAQHLLDWLHRGYWEKQGQDLEQAAAAAHGLLLAYRSVALAVQEECPNALDRACRLQREDAGSKELGSER------------------GGIRTASDTHLAEALQALLCSVTPSFLTTFLLPALVCIPHGRVGQDDIVRPSSWGEC--FLLPDSELEDRASGVTAKCSSTE------GCLPVSAELKTLQAIKHRRLYIPLLVRLQRRFPCFARSLFFRLVSPMGGGLKWRGAGGKGPGTESEGARATEAAHFS-----SSLPAP-------TFGMWVSYLQSRDWHSHFPYGRAEATFTLRRASGIRFNLRDKASASWTTAESDFMLSRASGGVLRRGLGLG--VGSKGRKGREGREGGEGGEGGRGGDEGWTLCQEWIPSPLGGPVMR 498
The following BLAST results are available for this feature:
BLAST of NO24G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24302.15.300e-13855.95las1-like family expressed [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00460NO24G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00460.1NO24G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00460.1.cds1NO24G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00460.1 ID=NO24G00460.1|Name=NO24G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp
ACCACAGAGATGACTGCAGCACCGCGACTTTGATCCATCAGCACTGCCAC
ATTCTCAGCAATATGGAATACACTCCGAGGGTCCTACCCTGGCAGGATTG
GGCCGAATGGACCGAGACTAGCAAGTGGCTCTTTTCACCCGACACAGACA
GCCGGCTGCGGGGTGTAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGA
CTTCCCGTGGCCATAGACGCCACCGCATCCCTGTTAGAAGTAGCTTTACT
TGAAAGTGGTCTTAATGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGT
ACGGCATGGTGATCACACGGGCTATCAATGGTCTCGTCGAAGGGCTACAA
ACCAAATTTTATGCTGAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGAT
CTCGCAGTGGCTGGTAGATCTCCGTCACGAAGCTACACATGCGAGTCTTC
CTTCGCTGGCCACACTTAGAATGGGGGCCCAGCATTTATTGGATTGGCTT
TACCGAGGGTACTGGGAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGC
CGCCGCCACTTACATTTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCAC
AGGAAGAATCCCCTAATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAA
AAAGGTGTGGGGAATGGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAG
CAGTAGCAGCAGCAGCAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGA
CGGCTAGTGACGCTCGTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCG
GTCACACCCTCCTTTGTCACCACCTTCCTCCTTCCTGCCCTGGTACGCAT
CTCACCAGAAGAAAGCTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCT
TCCTCCTCCCCGACCACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCC
TCAGCAGTCTCAACAAAACCAACCACATTCCCTACAACAATCCTACACAC
CCCTCCTGAGATCAAAGCAATGCACGAAGCCAAGCATCGACAGCTATATG
CTCCCTTGCTAATTCGCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCC
TTATTTTCCCGACTTGCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAA
AAGAGTAACTGTAGGAGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAG
AAGCAGCAGCAGAAGAAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACC
TCCCCCTTCCCGTATACCTACAGCATGTGGCTCTCATACCTTCGAAGCAA
AGACTGGCACTCCCACTTTGCCTATGGACGATCCGAGGCTTTATTTGCCT
TGCGACGGGCCCCTGGGATACGGTTTAATTTAAGGGACAAGGCGCAGGGC
AGCTGGACGAGTGCAGAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCC
TGTGCAGACACAGGGGCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGG
AGGAAGTGGAGGAAGAGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTG
AGGTGTAAGGAGTGGATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCT
TGACAGCAAGGGGTTCTGAAGTTAAGGAAATGAGAGGCAAAATAATCGAT
CAAATTTAAACTGGTGAGAAGAGGGAAACGAACTAGTTGAGACCGTGTTG
TTGATTGAAT
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protein sequence of NO24G00460.1

>NO24G00460.1-protein ID=NO24G00460.1-protein|Name=NO24G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MEYTPRVLPWQDWAEWTETSKWLFSPDTDSRLRGVGRVKAWRARGRLPVA
IDATASLLEVALLESGLNGSRSALELRNLYGMVITRAINGLVEGLQTKFY
AEPVNAVAARLGISQWLVDLRHEATHASLPSLATLRMGAQHLLDWLYRGY
WEKQAHDLESAAAAATYILVSYKNVALAAQEESPNALCRACRAPKEKGVG
NGNGSNGSSGNSSSSSSSSSSISGGGGIKTASDARLAEALDGLLASVTPS
FVTTFLLPALVRISPEESSSSSSSPETSFFLLPDHHLEAEAAAVAASAVS
TKPTTFPTTILHTPPEIKAMHEAKHRQLYAPLLIRLQRKFPGFAHSLFSR
LAATGMVQCREGKRVTVGEEEKAARTAESEAAAEEGGVTSPPSPTTSPFP
YTYSMWLSYLRSKDWHSHFAYGRSEALFALRRAPGIRFNLRDKAQGSWTS
AEREYMCSPACLPVQTQGLGLGPWVGVGEEEVEEEKGEEGEEEGWVRCKE
WMPCPLGGPILRLDSKGF*
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mRNA from alignment at chr24:151208..152917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00460.1 ID=NO24G00460.1|Name=NO24G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp|location=Sequence derived from alignment at chr24:151208..152917- (Nannochloropsis oceanica)
ACCACAGAGATGACTGCAGCACCGCGACTTTGATCCATCAGCACTGCCAC
ATTCTCAGCAATATGGAATACACTCCGAGGGTCCTACCCTGGCAGGATTG
GGCCGAATGGACCGAGACTAGCAAGTGGCTCTTTTCACCCGACACAGACA
GCCGGCTGCGGGGTGTAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGA
CTTCCCGTGGCCATAGACGCCACCGCATCCCTGTTAGAAGTAGCTTTACT
TGAAAGTGGTCTTAATGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGT
ACGGCATGGTGATCACACGGGCTATCAATGGTCTCGTCGAAGGGCTACAA
ACCAAATTTTATGCTGAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGAT
CTCGCAGTGGCTGGTAGATCTCCGTCACGAAGCTACACATGCGAGTCTTC
CTTCGCTGGCCACACTTAGAATGGGGGCCCAGCATTTATTGGATTGGCTT
TACCGAGGGTACTGGGAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGC
CGCCGCCACTTACATTTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCAC
AGGAAGAATCCCCTAATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAA
AAAGGTGTGGGGAATGGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAG
CAGTAGCAGCAGCAGCAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGA
CGGCTAGTGACGCTCGTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCG
GTCACACCCTCCTTTGTCACCACCTTCCTCCTTCCTGCCCTGGTACGCAT
CTCACCAGAAGAAAGCTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCT
TCCTCCTCCCCGACCACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCC
TCAGCAGTCTCAACAAAACCAACCACATTCCCTACAACAATCCTACACAC
CCCTCCTGAGATCAAAGCAATGCACGAAGCCAAGCATCGACAGCTATATG
CTCCCTTGCTAATTCGCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCC
TTATTTTCCCGACTTGCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAA
AAGAGTAACTGTAGGAGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAG
AAGCAGCAGCAGAAGAAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACC
TCCCCCTTCCCGTATACCTACAGCATGTGGCTCTCATACCTTCGAAGCAA
AGACTGGCACTCCCACTTTGCCTATGGACGATCCGAGGCTTTATTTGCCT
TGCGACGGGCCCCTGGGATACGGTTTAATTTAAGGGACAAGGCGCAGGGC
AGCTGGACGAGTGCAGAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCC
TGTGCAGACACAGGGGCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGG
AGGAAGTGGAGGAAGAGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTG
AGGTGTAAGGAGTGGATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCT
TGACAGCAAGGGGTTCTGAAGTTAAGGAAATGAGAGGCAAAATAATCGAT
CAAATTTAAACTGGTGAGAAGAGGGAAACGAACTAGTTGAGACCGTGTTG
TTGATTGAAT
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Coding sequence (CDS) from alignment at chr24:151208..152917-

>NO24G00460.1 ID=NO24G00460.1|Name=NO24G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr24:151208..152917- (Nannochloropsis oceanica)
ATGGAATACACTCCGAGGGTCCTACCCTGGCAGGATTGGGCCGAATGGAC
CGAGACTAGCAAGTGGCTCTTTTCACCCGACACAGACAGCCGGCTGCGGG
GTGTAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGACTTCCCGTGGCC
ATAGACGCCACCGCATCCCTGTTAGAAGTAGCTTTACTTGAAAGTGGTCT
TAATGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGTACGGCATGGTGA
TCACACGGGCTATCAATGGTCTCGTCGAAGGGCTACAAACCAAATTTTAT
GCTGAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGATCTCGCAGTGGCT
GGTAGATCTCCGTCACGAAGCTACACATGCGAGTCTTCCTTCGCTGGCCA
CACTTAGAATGGGGGCCCAGCATTTATTGGATTGGCTTTACCGAGGGTAC
TGGGAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGCCGCCGCCACTTA
CATTTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCACAGGAAGAATCCC
CTAATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAAAAAGGTGTGGGG
AATGGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAGCAGTAGCAGCAG
CAGCAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGACGGCTAGTGACG
CTCGTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCGGTCACACCCTCC
TTTGTCACCACCTTCCTCCTTCCTGCCCTGGTACGCATCTCACCAGAAGA
AAGCTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCTTCCTCCTCCCCG
ACCACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCCTCAGCAGTCTCA
ACAAAACCAACCACATTCCCTACAACAATCCTACACACCCCTCCTGAGAT
CAAAGCAATGCACGAAGCCAAGCATCGACAGCTATATGCTCCCTTGCTAA
TTCGCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCCTTATTTTCCCGA
CTTGCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAAAAGAGTAACTGT
AGGAGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAGAAGCAGCAGCAG
AAGAAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACCTCCCCCTTCCCG
TATACCTACAGCATGTGGCTCTCATACCTTCGAAGCAAAGACTGGCACTC
CCACTTTGCCTATGGACGATCCGAGGCTTTATTTGCCTTGCGACGGGCCC
CTGGGATACGGTTTAATTTAAGGGACAAGGCGCAGGGCAGCTGGACGAGT
GCAGAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCCTGTGCAGACACA
GGGGCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGGAGGAAGTGGAGG
AAGAGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTGAGGTGTAAGGAG
TGGATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCTTGACAGCAAGGG
GTTCTGA
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Synonyms
Publications