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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:136947..139751 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00390.6 vs.
Match: XP_005852690.1 (gtp-binding protein [Nannochloropsis gaditana CCMP526]; EKU23143.1 gtp-binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 591.3 bits (1523), Expect = 2.100e-165 Identity = 292/363 (80.44%), Postives = 324/363 (89.26%), Query Frame = 0
Query: 1 MHILDVSGTTNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVARRHAATKASVGPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQVKALVEAFLLVRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGAECFLKICRQKNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATAGLEPPDGKTKKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKSLSNFATAADGGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEGGNRRRVGEDYVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKKDKGVEGENGSGEG 364
MHILDVSGTTNEKGE TVGYDP+NDA+WLHGE+HAWVFNNLW++W+SV RRH ATK+S TLLGQLSGYGANP +IN VLDK+GVRDPVDLGEW+E++VKALVEAFL VRFPTILLLNKADQAGDTDKNISRIVERY+ASKCFVASAGAECFLKICRQK VI+YQAGA NFETIEDI+DDLDFRKARGE VP++EE TAGLE PD KTKKRLEKIRDMVLFRY TGVWAA+QAAVDLQ PVV YPVKSLSNF+T ADGG VFGNA+LV+PGSTVRSV G+VASGM++ LQYAELLEEGG RRRVGED+VLTG+ NIIKFF+RPVEER G SQ KEK+Q K++ K DK G++G EG
Sbjct: 445 MHILDVSGTTNEKGEATVGYDPVNDAKWLHGEIHAWVFNNLWRRWTSVVRRHTATKSSAASTLLGQLSGYGANPVMINKVLDKLGVRDPVDLGEWEEEEVKALVEAFLSVRFPTILLLNKADQAGDTDKNISRIVERYDASKCFVASAGAECFLKICRQKKVIRYQAGAGNFETIEDIQDDLDFRKARGEHVPAMEEETAGLEMPDSKTKKRLEKIRDMVLFRYGGTGVWAAVQAAVDLQHPVVCYPVKSLSNFSTDADGGRVFGNAILVRPGSTVRSVAGHVASGMVEYLQYAELLEEGGIRRRVGEDHVLTGQKNIIKFFYRPVEERPSHTGHSQSKEKDQSKSKSKSDK--TGDSGDCEG 805
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00390.6 ID=NO24G00390.6|Name=NO24G00390.6|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGGTAAGCCATGTCCCTCTAGAAAAAGCAGGAGTAGATG
GGAGTAACTAGATCTATGTTTATCTCCCTCTTTGCCTCGACTGACACAAA
CACACACAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCCCTTG
TGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGGTGCA
TGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGGTTTG
GTGCCGGGAGCGTCGGAGGTGAGGGAAGGAGGGGGGAAGCAATGGAGGAA
GGGACGAATGGAAAGAGGACACAGAGATAGGAAGAGAGGGGGCTCTGCGT
GGAGGGGAGATTACATATGCTTAAAGCATTTATTATGATCCTGCTTATAT
GAAGAGAAGTGCATAACCAACCGTGTTTATTTTCACGTTTTCCCCTTCCC
CCATTCCTTTTTTTCTATTGCCTGACACCAGGGGGCGGGATTGGGCAATA
AGTTTCTCGATGACTTGCGCCATGCCGACGTACTCATGCACATCCTTGAC
GTCTCTGGAACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCC
GATTAATGACGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCA
ACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACC
AAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGAGC
CAATCCCGCGGTGATTAATGCAGTTCTGGATAAGATGGGTGTGCGGGACC
CTGTGGACTTGGGCGAATGGGACGAGGACCAAGTCAAGGCGCTTGTAGAA
GCATTTTTGCTTGTGCGCTTTCCGACGATCCTCTTACTCAACAAGGCCGA
TCAGGCGGGAGATACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACG
AGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAG
ATATGCCGACAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTT
TGAGACGATCGAGGACATTGAGGATGATTTGGACTTTCGCAAGGCACGTG
GCGAGACCGTCCCTTCGCTAGAGGAAGCCACAGCAGGTTTGGAACCACCC
GACGGCAAGACTAAGAAACGCCTCGAGAAAATTCGAGACATGGTCCTCTT
TCGGTATCAAAGCACAGGAGTCTGGGCCGCTATCCAGGCTGCAGTGGATT
TGCAAGAGCCTGTGGTTGTATACCCCGTCAAGTCCTTGAGCAATTTCGCA
ACAGCAGCGGACGGAGGCGGGGTGTTTGGTAACGCCATGTTGGTGAAACC
GGGTTCGACGGTTCGCTCGGTAGTGGGATACGTGGCCTCAGGTATGATGG
ACTTATTGCAGTATGCAGAACTACTGGAAGAGGGGGGTAATCGGCGGCGC
GTCGGGGAGGATTATGTGCTGACAGGCAAGAATAACATCATCAAGTTCTT
CTTTCGCCCTGTCGAGGAACGACAAGTGCAAGGGGGGTCGTCGCAAGGCA
AAGAGAAGGAGCAACAGAAGGCGAGACCAAAGAAAGACAAAGGCGTGGAG
GGAGAGAATGGGAGTGGGGAGGGTGGCGAGATGTAAAAATAGAAACAAAG
TACCCAGCAGAGGCATAGAAAACAAATGGACATGCCTTTATTTGTTTGTT
GGCGATTCAATTATCCTCACGCGGCAAAGAAAAC back to topprotein sequence of NO24G00390.6 >NO24G00390.6-protein ID=NO24G00390.6-protein|Name=NO24G00390.6|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MHILDVSGTTNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVAR
RHAATKASVGPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQV
KALVEAFLLVRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGA
ECFLKICRQKNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATA
GLEPPDGKTKKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKS
LSNFATAADGGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEG
GNRRRVGEDYVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKK
DKGVEGENGSGEGGEM* back to topmRNA from alignment at chr24:136947..139751- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00390.6 ID=NO24G00390.6|Name=NO24G00390.6|organism=Nannochloropsis oceanica|type=mRNA|length=2805bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGGTAAGCCATGTCCCTCTAGAAAAAGCAGGAGTAGATG
GGAGTAACTAGATCTATGTTTATCTCCCTCTTTGCCTCGACTGACACAAA
CACACACAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCCCTTG
TGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGGTGCA
TGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGGTTTG
GTGCCGGGAGCGTCGGAGGTGAGGGAAGGAGGGGGGAAGCAATGGAGGAA
GGGACGAATGGAAAGAGGACACAGAGATAGGAAGAGAGGGGGCTCTGCGT
GGAGGGGAGATTACATATGCTTAAAGCATTTATTATGATCCTGCTTATAT
GAAGAGAAGTGCATAACCAACCGTGTTTATTTTCACGTTTTCCCCTTCCC
CCATTCCTTTTTTTCTATTGCCTGACACCAGGGGGCGGGATTGGGCAATA
AGTTTCTCGATGACTTGCGCCATGCCGACGTACTCATGCACATCCTTGAC
GTCTCTGGAACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCC
GATTAATGACGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCA
ACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACC
AAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGTAA
GTGAAGGGCTTTAGGTGGAAAGGTATACAGGAAAGAAGGAGAAGGATGCC
AAGTTTGGTCCTGGTCGGCCAGATTCGCGCGCCCTTCGTCTTGTGAGCCT
GTAGAAGAATGCGGTCGAAAAAGAATCACGATTCCGCCTGTTTTATTTAT
CTATATTTCATCACAGGAGCCAATCCCGCGGTGATTAATGCAGTTCTGGA
TAAGATGGGTGTGCGGGACCCTGTGGACTTGGGCGAATGGGACGAGGACC
AAGTCAAGGCGCTTGTAGAAGCATTTTTGCTTGTGCGCTTTCCGACGATC
CTCTTACTCAACAAGGCCGATCAGGTATGTCTTGCCATGTTCTAATGGTC
GGTAAGCCTGTGACTGTTTCTTATTGACGTTCTCAATCCTCCGTCACACT
GCAGGCGGGAGATACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACG
AGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAG
ATATGCCGACAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTT
TGAGACGATCGAGGACATTGAGGATGATTTGGACTTTCGCAAGTATGTCT
TTGGGGTTTAGGGGAAAGGGAAAGGACTCTTCTGTGTGGGAGAGGCGTTA
CGCGCTACGACTTGTGTATACGTGTGCGTGAGTGTATATTTGTGTATGCT
TTACTCTTACTATCCAACTGTGAGTCTTTTTCTTTTTCTAGCCGCTTGTA
CATCGAAGTCTTTTTGCATGGACTTACTCACGGCCCCCACACCTCGCTCG
CAAACACATTCAGGGCACGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCC
ACAGCAGGTTTGGAACCACCCGACGGCAAGACTAAGAAACGCCTCGAGAA
AATTCGAGACATGGTCCTCTTTCGGTATCAAAGCACAGGAGTCTGGGCCG
CTATCCAGGCTGCAGTGGATTTGCAAGAGCCTGTGGTTGTATACCCCGTC
AAGTCCTTGAGCAATTTCGCAACAGCAGCGGACGGAGGCGGGGTGTTTGG
TAACGCCATGTTGGTGAAACCGGGTTCGACGGTTCGCTCGGTAGTGGGAT
ACGTGGCCTCAGGTATGATGGACTTATTGCAGTATGCAGAACTACTGGAA
GAGGGGGGTAATCGGCGGCGCGTCGGGGAGGATTATGTGCTGACAGGCAA
GAATAACATCATCAAGTTCTTCTTTCGCCCTGTCGAGGAACGACAAGTGC
AAGGGGGGTCGTCGCAAGGCAAAGAGAAGGAGCAACAGAAGGCGAGACCA
AAGAAAGACAAAGGCGTGGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGA
GATGTAAAAATAGAAACAAAGTACCCAGCAGAGGCATAGAAAACAAATGG
ACATGCCTTTATTTGTTTGTTGGCGATTCAATTATCCTCACGCGGCAAAG
AAAAC back to topCoding sequence (CDS) from alignment at chr24:136947..139751- >NO24G00390.6 ID=NO24G00390.6|Name=NO24G00390.6|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
ATGCACATCCTTGACGTCTCTGGAACGACCAACGAAAAAGGCGAGACCAC
CGTCGGTTACGACCCGATTAATGACGCGGAATGGTTGCATGGGGAGGTCC
ACGCGTGGGTCTTCAACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGG
CGGCACGCGGCGACCAAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATT
GTCCGGGTATGGAGCCAATCCCGCGGTGATTAATGCAGTTCTGGATAAGA
TGGGTGTGCGGGACCCTGTGGACTTGGGCGAATGGGACGAGGACCAAGTC
AAGGCGCTTGTAGAAGCATTTTTGCTTGTGCGCTTTCCGACGATCCTCTT
ACTCAACAAGGCCGATCAGGCGGGAGATACTGACAAGAACATCTCTCGGA
TCGTCGAGCGGTACGAGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCC
GAGTGCTTTCTCAAGATATGCCGACAAAAAAATGTGATCAAATACCAGGC
GGGTGCTAGCAATTTTGAGACGATCGAGGACATTGAGGATGATTTGGACT
TTCGCAAGGCACGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCCACAGCA
GGTTTGGAACCACCCGACGGCAAGACTAAGAAACGCCTCGAGAAAATTCG
AGACATGGTCCTCTTTCGGTATCAAAGCACAGGAGTCTGGGCCGCTATCC
AGGCTGCAGTGGATTTGCAAGAGCCTGTGGTTGTATACCCCGTCAAGTCC
TTGAGCAATTTCGCAACAGCAGCGGACGGAGGCGGGGTGTTTGGTAACGC
CATGTTGGTGAAACCGGGTTCGACGGTTCGCTCGGTAGTGGGATACGTGG
CCTCAGGTATGATGGACTTATTGCAGTATGCAGAACTACTGGAAGAGGGG
GGTAATCGGCGGCGCGTCGGGGAGGATTATGTGCTGACAGGCAAGAATAA
CATCATCAAGTTCTTCTTTCGCCCTGTCGAGGAACGACAAGTGCAAGGGG
GGTCGTCGCAAGGCAAAGAGAAGGAGCAACAGAAGGCGAGACCAAAGAAA
GACAAAGGCGTGGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGAGATGTA
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