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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:136947..139751 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00390.3 vs.
Match: XP_005852690.1 (gtp-binding protein [Nannochloropsis gaditana CCMP526]; EKU23143.1 gtp-binding protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 667.2 bits (1720), Expect = 3.400e-188 Identity = 330/403 (81.89%), Postives = 362/403 (89.83%), Query Frame = 0
Query: 2 NGTRLIPVKLLDVAGLVPGASEGAGLGNKFLDDLRHADVLMHILDVSGTTNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVARRHAATKASVGPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQVKALVEAFLLVRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGAECFLKICRQKNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATAGLEPPDGKTKKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKSLSNFATAADGGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEGGNRRRVGEDYVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKKDKGVEGENGSGEG 405
NG R IPVKLLDVAGLVPGASEGAGLGNKFLDDLRHADVLMHILDVSGTTNEKGE TVGYDP+NDA+WLHGE+HAWVFNNLW++W+SV RRH ATK+S TLLGQLSGYGANP +IN VLDK+GVRDPVDLGEW+E++VKALVEAFL VRFPTILLLNKADQAGDTDKNISRIVERY+ASKCFVASAGAECFLKICRQK VI+YQAGA NFETIEDI+DDLDFRKARGE VP++EE TAGLE PD KTKKRLEKIRDMVLFRY TGVWAA+QAAVDLQ PVV YPVKSLSNF+T ADGG VFGNA+LV+PGSTVRSV G+VASGM++ LQYAELLEEGG RRRVGED+VLTG+ NIIKFF+RPVEER G SQ KEK+Q K++ K DK G++G EG
Sbjct: 405 NGMRFIPVKLLDVAGLVPGASEGAGLGNKFLDDLRHADVLMHILDVSGTTNEKGEATVGYDPVNDAKWLHGEIHAWVFNNLWRRWTSVVRRHTATKSSAASTLLGQLSGYGANPVMINKVLDKLGVRDPVDLGEWEEEEVKALVEAFLSVRFPTILLLNKADQAGDTDKNISRIVERYDASKCFVASAGAECFLKICRQKKVIRYQAGAGNFETIEDIQDDLDFRKARGEHVPAMEEETAGLEMPDSKTKKRLEKIRDMVLFRYGGTGVWAAVQAAVDLQHPVVCYPVKSLSNFSTDADGGRVFGNAILVRPGSTVRSVAGHVASGMVEYLQYAELLEEGGIRRRVGEDHVLTGQKNIIKFFYRPVEERPSHTGHSQSKEKDQSKSKSKSDK--TGDSGDCEG 805
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00390.3 ID=NO24G00390.3|Name=NO24G00390.3|organism=Nannochloropsis oceanica|type=mRNA|length=2025bp
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCC
CTTGTGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGG
TGCATGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGG
TTTGGTGCCGGGAGCGTCGGAGGGGGCGGGATTGGGCAATAAGTTTCTCG
ATGACTTGCGCCATGCCGACGTACTCATGCACATCCTTGACGTCTCTGGA
ACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCCGATTAATGA
CGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCAACAATCTGT
GGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACCAAGGCCTCG
GTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGAGCCAATCCCGC
GGTGATTAATGCAGTTCTGGATAAGATGGGTGTGCGGGACCCTGTGGACT
TGGGCGAATGGGACGAGGACCAAGTCAAGGCGCTTGTAGAAGCATTTTTG
CTTGTGCGCTTTCCGACGATCCTCTTACTCAACAAGGCCGATCAGGCGGG
AGATACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACGAGGCCTCGA
AATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAGATATGCCGA
CAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTTTGAGACGAT
CGAGGACATTGAGGATGATTTGGACTTTCGCAAGGCACGTGGCGAGACCG
TCCCTTCGCTAGAGGAAGCCACAGCAGGTTTGGAACCACCCGACGGCAAG
ACTAAGAAACGCCTCGAGAAAATTCGAGACATGGTCCTCTTTCGGTATCA
AAGCACAGGAGTCTGGGCCGCTATCCAGGCTGCAGTGGATTTGCAAGAGC
CTGTGGTTGTATACCCCGTCAAGTCCTTGAGCAATTTCGCAACAGCAGCG
GACGGAGGCGGGGTGTTTGGTAACGCCATGTTGGTGAAACCGGGTTCGAC
GGTTCGCTCGGTAGTGGGATACGTGGCCTCAGGTATGATGGACTTATTGC
AGTATGCAGAACTACTGGAAGAGGGGGGTAATCGGCGGCGCGTCGGGGAG
GATTATGTGCTGACAGGCAAGAATAACATCATCAAGTTCTTCTTTCGCCC
TGTCGAGGAACGACAAGTGCAAGGGGGGTCGTCGCAAGGCAAAGAGAAGG
AGCAACAGAAGGCGAGACCAAAGAAAGACAAAGGCGTGGAGGGAGAGAAT
GGGAGTGGGGAGGGTGGCGAGATGTAAAAATAGAAACAAAGTACCCAGCA
GAGGCATAGAAAACAAATGGACATGCCTTTATTTGTTTGTTGGCGATTCA
ATTATCCTCACGCGGCAAAGAAAAC back to topprotein sequence of NO24G00390.3 >NO24G00390.3-protein ID=NO24G00390.3-protein|Name=NO24G00390.3|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MNGTRLIPVKLLDVAGLVPGASEGAGLGNKFLDDLRHADVLMHILDVSGT
TNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVARRHAATKASV
GPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQVKALVEAFLL
VRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGAECFLKICRQ
KNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATAGLEPPDGKT
KKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKSLSNFATAAD
GGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEGGNRRRVGED
YVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKKDKGVEGENG
SGEGGEM* back to topmRNA from alignment at chr24:136947..139751- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00390.3 ID=NO24G00390.3|Name=NO24G00390.3|organism=Nannochloropsis oceanica|type=mRNA|length=2805bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGGTAAGCCATGTCCCTCTAGAAAAAGCAGGAGTAGATG
GGAGTAACTAGATCTATGTTTATCTCCCTCTTTGCCTCGACTGACACAAA
CACACACAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCCCTTG
TGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGGTGCA
TGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGGTTTG
GTGCCGGGAGCGTCGGAGGTGAGGGAAGGAGGGGGGAAGCAATGGAGGAA
GGGACGAATGGAAAGAGGACACAGAGATAGGAAGAGAGGGGGCTCTGCGT
GGAGGGGAGATTACATATGCTTAAAGCATTTATTATGATCCTGCTTATAT
GAAGAGAAGTGCATAACCAACCGTGTTTATTTTCACGTTTTCCCCTTCCC
CCATTCCTTTTTTTCTATTGCCTGACACCAGGGGGCGGGATTGGGCAATA
AGTTTCTCGATGACTTGCGCCATGCCGACGTACTCATGCACATCCTTGAC
GTCTCTGGAACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCC
GATTAATGACGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCA
ACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACC
AAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGTAA
GTGAAGGGCTTTAGGTGGAAAGGTATACAGGAAAGAAGGAGAAGGATGCC
AAGTTTGGTCCTGGTCGGCCAGATTCGCGCGCCCTTCGTCTTGTGAGCCT
GTAGAAGAATGCGGTCGAAAAAGAATCACGATTCCGCCTGTTTTATTTAT
CTATATTTCATCACAGGAGCCAATCCCGCGGTGATTAATGCAGTTCTGGA
TAAGATGGGTGTGCGGGACCCTGTGGACTTGGGCGAATGGGACGAGGACC
AAGTCAAGGCGCTTGTAGAAGCATTTTTGCTTGTGCGCTTTCCGACGATC
CTCTTACTCAACAAGGCCGATCAGGTATGTCTTGCCATGTTCTAATGGTC
GGTAAGCCTGTGACTGTTTCTTATTGACGTTCTCAATCCTCCGTCACACT
GCAGGCGGGAGATACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACG
AGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAG
ATATGCCGACAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTT
TGAGACGATCGAGGACATTGAGGATGATTTGGACTTTCGCAAGTATGTCT
TTGGGGTTTAGGGGAAAGGGAAAGGACTCTTCTGTGTGGGAGAGGCGTTA
CGCGCTACGACTTGTGTATACGTGTGCGTGAGTGTATATTTGTGTATGCT
TTACTCTTACTATCCAACTGTGAGTCTTTTTCTTTTTCTAGCCGCTTGTA
CATCGAAGTCTTTTTGCATGGACTTACTCACGGCCCCCACACCTCGCTCG
CAAACACATTCAGGGCACGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCC
ACAGCAGGTTTGGAACCACCCGACGGCAAGACTAAGAAACGCCTCGAGAA
AATTCGAGACATGGTCCTCTTTCGGTATCAAAGCACAGGAGTCTGGGCCG
CTATCCAGGCTGCAGTGGATTTGCAAGAGCCTGTGGTTGTATACCCCGTC
AAGTCCTTGAGCAATTTCGCAACAGCAGCGGACGGAGGCGGGGTGTTTGG
TAACGCCATGTTGGTGAAACCGGGTTCGACGGTTCGCTCGGTAGTGGGAT
ACGTGGCCTCAGGTATGATGGACTTATTGCAGTATGCAGAACTACTGGAA
GAGGGGGGTAATCGGCGGCGCGTCGGGGAGGATTATGTGCTGACAGGCAA
GAATAACATCATCAAGTTCTTCTTTCGCCCTGTCGAGGAACGACAAGTGC
AAGGGGGGTCGTCGCAAGGCAAAGAGAAGGAGCAACAGAAGGCGAGACCA
AAGAAAGACAAAGGCGTGGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGA
GATGTAAAAATAGAAACAAAGTACCCAGCAGAGGCATAGAAAACAAATGG
ACATGCCTTTATTTGTTTGTTGGCGATTCAATTATCCTCACGCGGCAAAG
AAAAC back to topCoding sequence (CDS) from alignment at chr24:136947..139751- >NO24G00390.3 ID=NO24G00390.3|Name=NO24G00390.3|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
ATGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGGTTT
GGTGCCGGGAGCGTCGGAGGGGGCGGGATTGGGCAATAAGTTTCTCGATG
ACTTGCGCCATGCCGACGTACTCATGCACATCCTTGACGTCTCTGGAACG
ACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCCGATTAATGACGC
GGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCAACAATCTGTGGA
AGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACCAAGGCCTCGGTG
GGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGAGCCAATCCCGCGGT
GATTAATGCAGTTCTGGATAAGATGGGTGTGCGGGACCCTGTGGACTTGG
GCGAATGGGACGAGGACCAAGTCAAGGCGCTTGTAGAAGCATTTTTGCTT
GTGCGCTTTCCGACGATCCTCTTACTCAACAAGGCCGATCAGGCGGGAGA
TACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACGAGGCCTCGAAAT
GCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAGATATGCCGACAA
AAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTTTGAGACGATCGA
GGACATTGAGGATGATTTGGACTTTCGCAAGGCACGTGGCGAGACCGTCC
CTTCGCTAGAGGAAGCCACAGCAGGTTTGGAACCACCCGACGGCAAGACT
AAGAAACGCCTCGAGAAAATTCGAGACATGGTCCTCTTTCGGTATCAAAG
CACAGGAGTCTGGGCCGCTATCCAGGCTGCAGTGGATTTGCAAGAGCCTG
TGGTTGTATACCCCGTCAAGTCCTTGAGCAATTTCGCAACAGCAGCGGAC
GGAGGCGGGGTGTTTGGTAACGCCATGTTGGTGAAACCGGGTTCGACGGT
TCGCTCGGTAGTGGGATACGTGGCCTCAGGTATGATGGACTTATTGCAGT
ATGCAGAACTACTGGAAGAGGGGGGTAATCGGCGGCGCGTCGGGGAGGAT
TATGTGCTGACAGGCAAGAATAACATCATCAAGTTCTTCTTTCGCCCTGT
CGAGGAACGACAAGTGCAAGGGGGGTCGTCGCAAGGCAAAGAGAAGGAGC
AACAGAAGGCGAGACCAAAGAAAGACAAAGGCGTGGAGGGAGAGAATGGG
AGTGGGGAGGGTGGCGAGATGTAA back to top
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