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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:121754..124765 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00350.2 vs.
Match: EWM24327.1 (26s proteasome non-atpase regulatory subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 593.2 bits (1528), Expect = 8.600e-166 Identity = 334/478 (69.87%), Postives = 378/478 (79.08%), Query Frame = 0
Query: 2 AADKMETDVPA--DAPTKYTPTLDDLKKNITLLEKAVQSSQLRLINRVLRNNTPFRRALPPSTLAEALQHYLAPDLPLRALGLEALSQMPCE-VPAAVAPP--SLPSTASSTMEVDKAEEEKPAGSKTVSFPPSPPPPPLFLPETTTYLLLLVLTSCLRASRHDLALSLASALLPFLRSYNRRTLEPLAAKAVFYLALIQERSGKHLAALRPLLVALHRTACLRHDDVGQATILNLLLRGLLADNLIEQASNLVARTHFPEGASNNQLCRYLYYVGRIQATQLDYSDAFTKLNQAARKAPSDDATTITTTSSSSSSSGRRSPAIALGFRREVTKLLLIVQLLLGEIPERATFDQPSLRRSLRPYLALTTAVRRGDLLEFEKTVQMHAELFKKDKTYTLILRLGHNVIKTGLRKISLSYSRISLVEIAQRLHLDGPVSAEFVCAKAIRDGVIDALIDHEAGCLQSRDVYDVYSTIEPQQ 475
A D METD PA + P TLD LKKN+TLL+ AVQ+SQLRLINRVLRNNTPFRR L PS L+EA+ +YL D PL+ALGL L+ +P + +P PP SLPST+SSTME+DK +EK S P PLFLPETTTYLLLLVLT+ +R R + A S+A+ALLP+LR NRRTL+ LAAK FYLAL QER + LA LRPL VALHRTACL HD++GQAT+LNLLLR LLADNLIEQA NL+ART FPE ASNNQLCR+LYYVGR++ATQLDY+DAF+KLNQA RKAP+D+ GR ALGFRREVTKLL+IVQLLLG+IPERATFDQP LRRSL+PYLALTTAVR GDLLEFEKTV HA +FKKDKT+TLILRLGHNVIKTGLRKISLSYSRISL EIA +LHLDGP SAEFVCAKAI DGVIDA++DHEAG LQSRDV D+YST+EPQQ
Sbjct: 42 AEDSMETDAPAATEEPKSSITTLDGLKKNVTLLQTAVQTSQLRLINRVLRNNTPFRRNLRPSILSEAISYYLPQDEPLKALGLAILADLPDDPLPPPPPPPASSLPSTSSSTMEMDK--DEKSGSPSQASAGKKAFPAPLFLPETTTYLLLLVLTTAMRLHRLEQAHSVATALLPYLRKQNRRTLDALAAKGYFYLALTQERRSQSLAPLRPLFVALHRTACLHHDEMGQATLLNLLLRSLLADNLIEQAGNLIARTSFPEHASNNQLCRFLYYVGRVRATQLDYTDAFSKLNQAVRKAPADE--------------GR----AALGFRREVTKLLVIVQLLLGDIPERATFDQPVLRRSLQPYLALTTAVRLGDLLEFEKTVTAHAAMFKKDKTHTLILRLGHNVIKTGLRKISLSYSRISLAEIAGKLHLDGPASAEFVCAKAINDGVIDAVLDHEAGYLQSRDVNDIYSTMEPQQ 499
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00350.2 ID=NO24G00350.2|Name=NO24G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp
CTTCGCTTGGCTGCCCTGTGTGCTTGTGCATTCGCAAGGAAAGGAAGAAA
AGGGTAAGGAGATGGATCGCATCGACCCCTGGTCCACCCATGACAAAGTC
TTCAGCTCTGGTGGTTCCATTCGACTCCCCCCGTCTGCCTGTAGGTAGGG
GAGGGAGAGGACGAGGACGTGCTTGAGGGCAAGTCTCATCAGAGGCGTCA
TCGCCAGAAAACCCTACCCTGCTTCGTTCCCTCGAAGAATTCCGTCGATG
CGGTGCTCCCACCGGTGCGTGCATGCGTGCGGGCCAGTCACACCACCTCT
ACAACAAGTTTGCCATCTCCTCGAGCAGCAGGGTGGCCGTGGCATTGCAT
ACGTTGCCGGCCGCGTCTCATCAATCTCCTCCTTTCTCCTGAAACAAACA
AATCACAACACCAGGCAACGAGAAGCATGGCCGCCGACAAGATGGAGACG
GACGTGCCCGCCGATGCGCCCACGAAGTACACGCCCACGCTAGATGACCT
GAAAAAGAACATCACACTGCTGGAGAAAGCCGTACAATCCTCCCAACTCC
GTCTCATCAACCGGGTCCTCCGCAATAATACCCCTTTCCGTCGCGCACTC
CCTCCCTCCACCCTTGCCGAGGCCCTCCAACACTACCTCGCCCCTGATCT
CCCTCTTCGAGCGCTAGGGCTGGAGGCTCTCTCCCAGATGCCATGCGAGG
TGCCTGCAGCCGTCGCCCCTCCCTCCCTCCCTTCCACCGCCTCCTCCACC
ATGGAAGTCGACAAGGCGGAGGAAGAGAAGCCCGCGGGAAGCAAGACAGT
CTCGTTCCCTCCCTCCCCTCCTCCGCCTCCCCTCTTCCTCCCTGAAACCA
CCACCTACCTCCTCCTCCTCGTCCTCACCTCCTGCCTCCGCGCCTCCCGC
CATGACCTCGCCCTCTCCCTCGCTTCCGCCCTCCTCCCCTTTCTCCGCTC
CTATAACCGGCGCACGCTCGAACCGCTGGCGGCCAAGGCCGTATTTTACT
TAGCACTAATCCAGGAGAGATCAGGGAAACACTTGGCAGCCCTCCGTCCC
CTCCTCGTCGCCCTGCACCGCACTGCCTGCTTACGTCACGATGACGTTGG
ACAGGCGACCATCCTCAACTTGTTGTTGAGGGGTCTCCTGGCTGATAATT
TGATTGAGCAAGCGAGCAATCTGGTGGCCCGCACCCACTTTCCCGAGGGC
GCGAGCAACAACCAGCTCTGTCGCTATCTCTACTATGTGGGCCGGATCCA
AGCCACTCAGCTGGATTACTCCGACGCCTTTACAAAGCTCAACCAAGCCG
CCCGAAAAGCACCCTCGGACGACGCTACCACCATCACCACCACCAGCAGC
AGCAGCAGCAGCAGCGGCAGGAGGAGCCCCGCAATTGCCCTGGGGTTTAG
GCGGGAGGTGACCAAACTGCTCCTCATTGTGCAGCTCCTCCTGGGAGAGA
TCCCAGAGCGGGCCACCTTCGACCAGCCCTCCCTCCGTCGTTCCCTCCGT
CCCTACCTTGCCCTGACCACCGCCGTGCGGCGTGGGGACTTGCTGGAGTT
TGAAAAAACGGTTCAAATGCACGCCGAGCTCTTCAAGAAGGATAAAACCT
ACACACTCATCCTCCGCCTGGGCCACAACGTGATCAAGACTGGCCTTCGA
AAAATCTCTCTCTCCTACTCCCGCATCTCCCTCGTAGAAATTGCACAGAG
GCTGCATCTAGACGGCCCCGTTTCGGCGGAATTTGTCTGCGCCAAGGCCA
TTCGGGATGGTGTCATCGACGCCCTCATCGATCACGAGGCAGGCTGCCTC
CAATCACGGGATGTGTATGACGTCTACTCGACCATCGAACCTCAGCAGGT
AGGGGCGAAGCTACCCTCCCTCCTTCCCTTTATTTCCTTCCTCGTTGCCC
CTCTCGGCCGACTCGGTGGAGTGTCTCACGACCAACCCTCCCTCCGTCGT
TCCCTCCCTCCCCCCTTCAGGCCTTTCACAAGCGCATCACCTTCTGCCTG
GACGTGCACAACGAAGCCGTTAAATCCCTCCGATACCCGGATGTACCGAG
CTACGGAGGCAAGAAGAAAGGCAGCCTGGAGGAGGAGGAGGAAGGGAAGG
GGAAAGGGGAGGAGGAGAAGACGGAGGAGGAGTTAGCCAAGGAGCTGGAG
GAGGACATGGAGGAAGAGTTTTAAAGAAGTGGAGGGAGG back to topprotein sequence of NO24G00350.2 >NO24G00350.2-protein ID=NO24G00350.2-protein|Name=NO24G00350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MAADKMETDVPADAPTKYTPTLDDLKKNITLLEKAVQSSQLRLINRVLRN
NTPFRRALPPSTLAEALQHYLAPDLPLRALGLEALSQMPCEVPAAVAPPS
LPSTASSTMEVDKAEEEKPAGSKTVSFPPSPPPPPLFLPETTTYLLLLVL
TSCLRASRHDLALSLASALLPFLRSYNRRTLEPLAAKAVFYLALIQERSG
KHLAALRPLLVALHRTACLRHDDVGQATILNLLLRGLLADNLIEQASNLV
ARTHFPEGASNNQLCRYLYYVGRIQATQLDYSDAFTKLNQAARKAPSDDA
TTITTTSSSSSSSGRRSPAIALGFRREVTKLLLIVQLLLGEIPERATFDQ
PSLRRSLRPYLALTTAVRRGDLLEFEKTVQMHAELFKKDKTYTLILRLGH
NVIKTGLRKISLSYSRISLVEIAQRLHLDGPVSAEFVCAKAIRDGVIDAL
IDHEAGCLQSRDVYDVYSTIEPQQVGAKLPSLLPFISFLVAPLGRLGGVS
HDQPSLRRSLPPPFRPFTSASPSAWTCTTKPLNPSDTRMYRATEARRKAA
WRRRRKGRGKGRRRRRRRS* back to topmRNA from alignment at chr24:121754..124765+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00350.2 ID=NO24G00350.2|Name=NO24G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=3012bp|location=Sequence derived from alignment at chr24:121754..124765+ (Nannochloropsis oceanica)
CTTCGCTTGGCTGCCCTGTGTGCTTGTGCATTCGCAAGGAAAGGAAGAAA
AGGGTAAGGAGATGGATCGCATCGACCCCTGGTCCACCCATGACAAAGTC
TTCAGCTCTGGTGGTTCCATTCGACTCCCCCCGTCTGCCTGTAGGTAGGG
GAGGGAGAGGACGAGGACGTGCTTGAGGGCAAGTCTCATCAGAGGCGTCA
TCGCCAGAAAACCCTACCCTGCTTCGTTCCCTCGAAGAATTCCGTCGATG
CGGTGCTCCCACCGGTGCGTGCATGCGTGCGGGCCAGTCACACCACCTCT
ACAACAAGTTTGCCATCTCCTCGAGCAGCAGGGTGGCCGTGGCATTGCAT
ACGTTGCCGGCCGCGTCTCATCAATCTCCTCCTTTCTCCTGAAACAAACA
AATCACAACACCAGGCAACGAGAAGCATGGCCGCCGACAAGATGGAGACG
GACGTGCCCGCCGATGCGCCCACGAAGTACACGCCCACGCTAGATGGTAC
GTCCGTTTGGTGATGTGATTGCTTGTGTGACTGTGGAGATCATGGATGCA
TTCCTTGTCGCGTTGGGGAGCAGCAACACGAAAAGGGAGCGTGTCCGCTC
CTCTGTCTACCCTCCTTCCCCGCCTCCCCCCCCTCCCTTCTCCAACCCCT
CCCCCACATCGTGATACGCGCATCTTTGTATAGAATTTTCTCCGTTTACG
CGCTTTCTGTATCAGGGACGGCAACCCTGACAGAGCCCACCCACCTCGCC
CTCCCTCCTTCCCTCTTTCCCCCGTTTTTCCAGACCTGAAAAAGAACATC
ACACTGCTGGAGAAAGCCGTACAATCCTCCCAACTCCGTCTCATCAACCG
GGTCCTCCGCAATAATACCCCTTTCCGTCGCGCACTCCCTCCCTCCACCC
TTGCCGAGGCCCTCCAACACTACCTCGCCCCTGATCTCCCTCTTCGAGCG
CTAGGGCTGGAGGCTCTCTCCCAGATGCCATGCGAGGTGCCTGCAGCCGT
CGCCCCTCCCTCCCTCCCTTCCACCGCCTCCTCCACCATGGAAGTCGACA
AGGCGGAGGAAGAGAAGCCCGCGGGAAGCAAGACAGTCTCGTTCCCTCCC
TCCCCTCCTCCGCCTCCCCTCTTCCTCCCTGAAACCACCACCTACCTCCT
CCTCCTCGTCCTCACCTCCTGCCTCCGCGCCTCCCGCCATGACCTCGCCC
TCTCCCTCGCTTCCGCCCTCCTCCCCTTTCTCCGCTCCTATAACCGGCGC
ACGCTCGAACCGCTGGCGGCCAAGGCCGTATTTTACTTAGCACTAATCCA
GGAGAGATCAGGGAAACACTTGGCAGCCCTCCGTCCCCTCCTCGTCGCCC
TGCACCGCACTGCCTGCTTACGTCACGATGACGTTGGACAGGCGACCATC
CTCAACTTGTTGTTGAGGGGTCTCCTGGCTGATAATTTGATTGAGCAAGC
GAGCAATCTGGTGGCCCGCACCCACTTTCCCGAGGTACGCACGTCCTTGC
CCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGTTCTTCCCAT
ATAGGCGTCATTCGTGCTTTTTATTCAAGAAGTGATCTATTCATCCCCTC
ATATATGCATCCATGCATGCCTGCCTTCGTCTCACAACAAAAGGGCGCGA
GCAACAACCAGCTCTGTCGCTATCTCTACTATGTGGGCCGGATCCAAGCC
ACTCAGCTGGATTACTCCGACGCCTTTACAAAGCTCAACCAAGCCGCCCG
AAAAGCACCCTCGGACGACGCTACCACCATCACCACCACCAGCAGCAGCA
GCAGCAGCAGCGGCAGGAGGAGCCCCGCAATTGCCCTGGGGTTTAGGCGG
GAGGTGACCAAACTGCTCCTCATTGTGCAGCTCCTCCTGGGAGAGATCCC
AGAGCGGGCCACCTTCGACCAGCCCTCCCTCCGTCGTTCCCTCCGTCCCT
ACCTTGCCCTGACCACCGCCGTGCGGCGTGGGGACTTGCTGGAGTTTGAA
AAAACGGTTCAAATGCACGCCGAGCTCTTCAAGAAGGTACCTTTCTTTTT
TATTTATTTTTCCATGGCTGATCGTCCTCCCTCCTTCCCTCCCTCCTTCT
CTCCCTCCCTCTCTCCCTCCCTCTCTTCCTCCCTTCTATACTACCTAGCT
CAGCCCTTGTCCCCCTCCCACCCACCCCTCCCTCTCTCCCGCCCTCCTTC
CTCCCTGCGACGGGCGATGCAATGCCTGGACTATCTCAAATGCTAAGTAT
CTGACGCAGCCCTCCCTCCCTCCCTCCCTCCCTCACTCGCTTTCCAGGAT
AAAACCTACACACTCATCCTCCGCCTGGGCCACAACGTGATCAAGACTGG
CCTTCGAAAAATCTCTCTCTCCTACTCCCGCATCTCCCTCGTAGAAATTG
CACAGAGGCTGCATCTAGGTCCGTCCCCCTCCCCTCCCTCCGTCCTTCCT
TTCCCTCGGCGGCATGTTCGCACACTCACCATTCTCCTCCCTCTCCCCCC
CCCGTCCTCCCCCCGCTGTCCCCCCCTCCCTCAGACGGCCCCGTTTCGGC
GGAATTTGTCTGCGCCAAGGCCATTCGGGATGGTGTCATCGACGCCCTCA
TCGATCACGAGGCAGGCTGCCTCCAATCACGGGATGTGTATGACGTCTAC
TCGACCATCGAACCTCAGCAGGTAGGGGCGAAGCTACCCTCCCTCCTTCC
CTTTATTTCCTTCCTCGTTGCCCCTCTCGGCCGACTCGGTGGAGTGTCTC
ACGACCAACCCTCCCTCCGTCGTTCCCTCCCTCCCCCCTTCAGGCCTTTC
ACAAGCGCATCACCTTCTGCCTGGACGTGCACAACGAAGCCGTTAAATCC
CTCCGATACCCGGATGTACCGAGCTACGGAGGCAAGAAGAAAGGCAGCCT
GGAGGAGGAGGAGGAAGGGAAGGGGAAAGGGGAGGAGGAGAAGACGGAGG
AGGAGTTAGCCAAGGAGCTGGAGGAGGACATGGAGGAAGAGTTTTAAAGA
AGTGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr24:121754..124765+ >NO24G00350.2 ID=NO24G00350.2|Name=NO24G00350.2|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr24:121754..124765+ (Nannochloropsis oceanica)
ATGGCCGCCGACAAGATGGAGACGGACGTGCCCGCCGATGCGCCCACGAA
GTACACGCCCACGCTAGATGACCTGAAAAAGAACATCACACTGCTGGAGA
AAGCCGTACAATCCTCCCAACTCCGTCTCATCAACCGGGTCCTCCGCAAT
AATACCCCTTTCCGTCGCGCACTCCCTCCCTCCACCCTTGCCGAGGCCCT
CCAACACTACCTCGCCCCTGATCTCCCTCTTCGAGCGCTAGGGCTGGAGG
CTCTCTCCCAGATGCCATGCGAGGTGCCTGCAGCCGTCGCCCCTCCCTCC
CTCCCTTCCACCGCCTCCTCCACCATGGAAGTCGACAAGGCGGAGGAAGA
GAAGCCCGCGGGAAGCAAGACAGTCTCGTTCCCTCCCTCCCCTCCTCCGC
CTCCCCTCTTCCTCCCTGAAACCACCACCTACCTCCTCCTCCTCGTCCTC
ACCTCCTGCCTCCGCGCCTCCCGCCATGACCTCGCCCTCTCCCTCGCTTC
CGCCCTCCTCCCCTTTCTCCGCTCCTATAACCGGCGCACGCTCGAACCGC
TGGCGGCCAAGGCCGTATTTTACTTAGCACTAATCCAGGAGAGATCAGGG
AAACACTTGGCAGCCCTCCGTCCCCTCCTCGTCGCCCTGCACCGCACTGC
CTGCTTACGTCACGATGACGTTGGACAGGCGACCATCCTCAACTTGTTGT
TGAGGGGTCTCCTGGCTGATAATTTGATTGAGCAAGCGAGCAATCTGGTG
GCCCGCACCCACTTTCCCGAGGGCGCGAGCAACAACCAGCTCTGTCGCTA
TCTCTACTATGTGGGCCGGATCCAAGCCACTCAGCTGGATTACTCCGACG
CCTTTACAAAGCTCAACCAAGCCGCCCGAAAAGCACCCTCGGACGACGCT
ACCACCATCACCACCACCAGCAGCAGCAGCAGCAGCAGCGGCAGGAGGAG
CCCCGCAATTGCCCTGGGGTTTAGGCGGGAGGTGACCAAACTGCTCCTCA
TTGTGCAGCTCCTCCTGGGAGAGATCCCAGAGCGGGCCACCTTCGACCAG
CCCTCCCTCCGTCGTTCCCTCCGTCCCTACCTTGCCCTGACCACCGCCGT
GCGGCGTGGGGACTTGCTGGAGTTTGAAAAAACGGTTCAAATGCACGCCG
AGCTCTTCAAGAAGGATAAAACCTACACACTCATCCTCCGCCTGGGCCAC
AACGTGATCAAGACTGGCCTTCGAAAAATCTCTCTCTCCTACTCCCGCAT
CTCCCTCGTAGAAATTGCACAGAGGCTGCATCTAGACGGCCCCGTTTCGG
CGGAATTTGTCTGCGCCAAGGCCATTCGGGATGGTGTCATCGACGCCCTC
ATCGATCACGAGGCAGGCTGCCTCCAATCACGGGATGTGTATGACGTCTA
CTCGACCATCGAACCTCAGCAGGTAGGGGCGAAGCTACCCTCCCTCCTTC
CCTTTATTTCCTTCCTCGTTGCCCCTCTCGGCCGACTCGGTGGAGTGTCT
CACGACCAACCCTCCCTCCGTCGTTCCCTCCCTCCCCCCTTCAGGCCTTT
CACAAGCGCATCACCTTCTGCCTGGACGTGCACAACGAAGCCGTTAAATC
CCTCCGATACCCGGATGTACCGAGCTACGGAGGCAAGAAGAAAGGCAGCC
TGGAGGAGGAGGAGGAAGGGAAGGGGAAAGGGGAGGAGGAGAAGACGGAG
GAGGAGTTAG back to top
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