NO24G00170.1, NO24G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00170.1
Unique NameNO24G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr24:52787..55037 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:52787..55037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00170.1 vs.
Match: WP_095045131.1 (cytochrome P450 [Candidatus Promineofilum breve]; CUS05762.1 Cytochrome P450 [Candidatus Promineofilum breve])

HSP 1 Score: 84.7 bits (208), Expect = 6.600e-13
Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 0 
Query:  165 PGPRPLPLFGNMLRLIRLGGPDRFDAQMKERYGKIARSFILGRVWHTVSDPDLAREVLVTRTHDFEDSFVPAQMLAVWGDTGIIFSNGEEHFRNRRLSAPAFHRSEMVDRTCVLVVGLAEKLRNRYLALEPGTEINVYDTMRSLTLEAITQSSF 319
            P P+  PL G    LI   G  RF +++ + YG I R  +    ++ ++DP+LARE LVT+  +F        +L+     G++ +NGE H R RRL+ PAFH ++ +D     +V   E + + +     G  ++  + MR LT+  + Q+ F
Sbjct:    5 PSPKGPPLIGQARELI--AGAPRFTSRLADEYGPIVRFSVFANHFYLIADPELAREALVTQAANFPKDERDVMILSRMIGHGLVTTNGEAHKRQRRLTQPAFH-TKRIDAYAGTMVDYTEAMVDEW---ADGRTLDAAEAMRELTMYIVAQTLF 152
The following BLAST results are available for this feature:
BLAST of NO24G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_095045131.16.600e-1331.17cytochrome P450 [Candidatus Promineofilum breve]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00170NO24G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00170.1NO24G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00170.1.cds1NO24G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00170.1.cds2NO24G00170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00170.1.cds3NO24G00170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00170.1.cds4NO24G00170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00170.1.cds5NO24G00170.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00170.1.cds6NO24G00170.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00170.1 ID=NO24G00170.1|Name=NO24G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
ATGAACACCCTGTCTATGACAAGCCAGGGGAAGTTCGCGGTCTGGACCAA
GCTACCTTATCAAAGCCTCTCCTCCGATTGCCCGGCCCCCACGCAACAAA
AGCAACAGCAGCAGCAGCAACATGCACCATCACTTCCGCCGGCGTTGCCC
CCCCCGCGCTCCTTGCTTCCTGTCATAGCCTCTTTTATTGTTGTCTCTGA
ACTTGTCGGCAGCTTATTGAGCGGACAGGGTGTCCCAACCGGTCCTTTTA
ATGGCGTGAGCGCCTTCTCCTTCTTGCCTCCTTCCACCAGGCCTCTCATC
TCCACGTCCCGCATTCCTATTCAACTACCGCCTACAAGCGTACAAGTCCG
ACACTTCTCCTTCCCTACCGCCGTTTTTCCATTTTCCCTTCTTTCCCGTT
ACGCAACCAGTACCACCACGATCCGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTTCCTCTCCTCACTTGGCGCTGGCCCCTGGCCC
TCGCCCCCTTCCTTTGTTCGGCAATATGTTGCGCCTCATCCGCCTAGGTG
GCCCAGATCGTTTCGACGCCCAGATGAAAGAGAGATACGGGAAAATAGCA
AGGTCTTTCATTTTGGGCCGCGTCTGGCACACGGTGTCGGATCCCGATCT
CGCAAGAGAGGTGCTGGTGACGCGCACTCATGATTTTGAAGACTCTTTCG
TCCCTGCACAAATGCTGGCGGTGTGGGGCGACACCGGCATCATTTTTTCC
AACGGAGAAGAGCATTTCCGTAACCGCCGCCTGTCCGCGCCTGCCTTCCA
CAGGTCGGAGATGGTGGACCGGACGTGCGTCTTGGTCGTAGGACTAGCCG
AGAAATTGCGAAACAGATACCTCGCCCTCGAGCCCGGCACTGAGATTAAT
GTTTACGACACGATGCGATCCCTGACCCTGGAGGCCATAACCCAAAGCTC
CTTCAGCATCTCCCTCGGCCTCTTCGACGACGCGCCCGTCTCCCCGCCCT
CCCTCCCGCCCTCCCCCCGCCCTCCTTCCCGCCCTCCCCCATCGACGGCC
GACGTCTCGACTCCCTCGTTCGCGCAATTTTTTTGCACCTGGGGCCCGCC
ACTCGCAACCTGCTCCCCTATGCAGAGAAATTCGGCTTGA
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protein sequence of NO24G00170.1

>NO24G00170.1-protein ID=NO24G00170.1-protein|Name=NO24G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MNTLSMTSQGKFAVWTKLPYQSLSSDCPAPTQQKQQQQQQHAPSLPPALP
PPRSLLPVIASFIVVSELVGSLLSGQGVPTGPFNGVSAFSFLPPSTRPLI
STSRIPIQLPPTSVQVRHFSFPTAVFPFSLLSRYATSTTTIRSSSSSSSS
SSSSSSSSPHLALAPGPRPLPLFGNMLRLIRLGGPDRFDAQMKERYGKIA
RSFILGRVWHTVSDPDLAREVLVTRTHDFEDSFVPAQMLAVWGDTGIIFS
NGEEHFRNRRLSAPAFHRSEMVDRTCVLVVGLAEKLRNRYLALEPGTEIN
VYDTMRSLTLEAITQSSFSISLGLFDDAPVSPPSLPPSPRPPSRPPPSTA
DVSTPSFAQFFCTWGPPLATCSPMQRNSA*
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mRNA from alignment at chr24:52787..55037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00170.1 ID=NO24G00170.1|Name=NO24G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp|location=Sequence derived from alignment at chr24:52787..55037+ (Nannochloropsis oceanica)
ATGAACACCCTGTCTATGACAAGCCAGGGGAAGTTCGCGTACGTGCGAGA
TGTCCTTGATTTAGCAGCAGCCGTACACATGTCCCCTGTTGTCTCGCCAT
GTCCAAGTTTATCATCTCCGGAACGACGTACACACGCAGCAGCACAGTGC
TGCAGTTTCATACGAGACAGCTCGATTGGAGCATCTCACAATCGACGGCA
AGCAAAACACACGACAGAGAAACGAATGTCGTCGCGTGTTTGGAATCCGG
AAGCCATGCCAAAAAGAAGGATGAAAAAAATGGCCATATTCTTCAGTACA
TACGTGTATCAGCTCGAGGCTTTCATATGCGCTGCCAAGCAAGCACAGAG
GGAGAGGAGGCCTTGAGTACGTATCTTATAAACCATGCAAATCAATTAAT
ACTTGCCTCTTATGCATGCATACCATACACACAGGGTCTGGACCAAGCTA
CCTTATCAAAGCCTCTCCTCCGATTGCCCGGCCCCCACGCAACAAAAGCA
ACAGCAGCAGCAGCAACATGCACCATCACTTCCGCCGGCGTTGCCCCCCC
CGCGCTCCTTGCTTCCTGTCATAGCCTCTTTTATTGTTGTCTCTGAACTT
GTCGGCAGCTTATTGAGCGGACAGGGTGTCCCAACCGGTCCTTTTAATGG
CGTGAGCGCCTTCTCCTTCTTGCCTCCTTCCACCAGGCCTCTCATCTCCA
CGTCCCGCATTCCTATTCAACTACCGCCTACAAGCGTACAAGTCCGACAC
TTCTCCTTCCCTACCGCCGTTTTTCCATTTTCCCTTCTTTCCCGTTACGC
AACCAGTACCACCACGATCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTTCCTCTCCTCACTTGGCGCTGGCCCCTGGCCCTCGC
CCCCTTCCTTTGTTCGGCAATATGTTGCGCCTCATCCGCCTAGGTGGCCC
AGATCGTTTCGACGCCCAGATGAAAGAGAGATACGGGAAAATAGCAAGGT
AGGCCCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCGTCCA
GAAAGCCATTGAGTACCTCCCTCCCTCCCTCCCTCCCTCCTTTTCTACCC
TCCTCCTTTTCAATCAGGTCTTTCATTTTGGGCCGCGTCTGGCACACGGT
GTCGGATCCCGATCTCGCAAGAGAGGTGCTGGTGACGCGCACTCATGATT
TTGAAGACTCTTTCGTCCCTGCACAAGTATGGAGGCACGCTCTCCCTCCC
TCCCTTTCTCTTTTCATTTCTCTTTCCCTCTCCCTCTCCCTGAAATCATC
TAAATGATAATTTTGATGTAAGGAATTTTTCGTGAGAACCTTTCGGTTAT
CTCAACTCTTGAACTCGTTTCTATCCAAGCCTGCCTTCCCTCTAGCCCTA
ACTCTTCCCCCCTCCCTCCCTCCTTCCTTTCTCCCCTTCTCTCCTCTTCC
TTTCCCTCCACTTGCAAGATGCTGGCGGTGTGGGGCGACACCGGCATCAT
TTTTTCCAACGGAGAAGAGCATTTCCGTAACCGCCGCCTGTCCGCGCCTG
CCTTCCACAGGTCGGAGATGGTGGACCGGACGTGCGTCTTGGTCGTAGGA
CTAGCCGAGAAATTGCGAAACAGGTAACCCCGCCCTCCTTCCCCTCGTTC
CCTTCTTCTTTGATTCCTCCCGTCTGCCTCTGCGTGGTTGTATGGCTTTC
ATTATCTAGGGATTTCACCGTGAATCCACACGCGTTTCTTCGTGGGTGGC
ACTGATAAACGTAATGCACATGGTGTCTTTTCACAGATACCTCGCCCTCG
AGCCCGGCACTGAGATTAATGTTTACGACACGATGCGATCCCTGACCCTG
GAGGCCATAACCCAAAGCTCCTTCAGCATCTCCCTCGGCCTCTTCGACGA
CGCGCCCGTCTCCCCGCCCTCCCTCCCGCCCTCCCCCCGCCCTCCTTCCC
GCCCTCCCCCATCGACGGCCGACGTCTCGACTCCCTCGTTCGCGCAATTT
TTTTGCACCTGGGGCCCGCCACTCGCAACCTGCTCCCCTATGCAGGTGAG
CCCTCCCCTCCCTCCCTTCCCTCCCTCCCTCCCTCTCTCCCTCTTCCTCT
TTTCCCCTCTCTTCACCCACTTTAAAAACAACGTATTTTGGTGTGTCTAG
AGCATGCCAACCAGGCCATCCACACCACTTACGAATGACCCCTCCGTTCC
TCCCTCCTTCCCTCTCTCCCTCCCTCCTTCCCACAGAGAAATTCGGCTTG
A
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Coding sequence (CDS) from alignment at chr24:52787..55037+

>NO24G00170.1 ID=NO24G00170.1|Name=NO24G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at chr24:52787..55037+ (Nannochloropsis oceanica)
ATGAACACCCTGTCTATGACAAGCCAGGGGAAGTTCGCGGTCTGGACCAA
GCTACCTTATCAAAGCCTCTCCTCCGATTGCCCGGCCCCCACGCAACAAA
AGCAACAGCAGCAGCAGCAACATGCACCATCACTTCCGCCGGCGTTGCCC
CCCCCGCGCTCCTTGCTTCCTGTCATAGCCTCTTTTATTGTTGTCTCTGA
ACTTGTCGGCAGCTTATTGAGCGGACAGGGTGTCCCAACCGGTCCTTTTA
ATGGCGTGAGCGCCTTCTCCTTCTTGCCTCCTTCCACCAGGCCTCTCATC
TCCACGTCCCGCATTCCTATTCAACTACCGCCTACAAGCGTACAAGTCCG
ACACTTCTCCTTCCCTACCGCCGTTTTTCCATTTTCCCTTCTTTCCCGTT
ACGCAACCAGTACCACCACGATCCGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTTCCTCTCCTCACTTGGCGCTGGCCCCTGGCCC
TCGCCCCCTTCCTTTGTTCGGCAATATGTTGCGCCTCATCCGCCTAGGTG
GCCCAGATCGTTTCGACGCCCAGATGAAAGAGAGATACGGGAAAATAGCA
AGGTCTTTCATTTTGGGCCGCGTCTGGCACACGGTGTCGGATCCCGATCT
CGCAAGAGAGGTGCTGGTGACGCGCACTCATGATTTTGAAGACTCTTTCG
TCCCTGCACAAATGCTGGCGGTGTGGGGCGACACCGGCATCATTTTTTCC
AACGGAGAAGAGCATTTCCGTAACCGCCGCCTGTCCGCGCCTGCCTTCCA
CAGGTCGGAGATGGTGGACCGGACGTGCGTCTTGGTCGTAGGACTAGCCG
AGAAATTGCGAAACAGATACCTCGCCCTCGAGCCCGGCACTGAGATTAAT
GTTTACGACACGATGCGATCCCTGACCCTGGAGGCCATAACCCAAAGCTC
CTTCAGCATCTCCCTCGGCCTCTTCGACGACGCGCCCGTCTCCCCGCCCT
CCCTCCCGCCCTCCCCCCGCCCTCCTTCCCGCCCTCCCCCATCGACGGCC
GACGTCTCGACTCCCTCGTTCGCGCAATTTTTTTGCACCTGGGGCCCGCC
ACTCGCAACCTGCTCCCCTATGCAGAGAAATTCGGCTTGA
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Synonyms
Publications