NO24G00160.2, NO24G00160.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00160.2
Unique NameNO24G00160.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr24:48655..52557 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:48655..52557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00160.2 vs.
Match: KXZ49056.1 (hypothetical protein GPECTOR_23g141 [Gonium pectorale])

HSP 1 Score: 245.0 bits (624), Expect = 4.600e-61
Identity = 128/271 (47.23%), Postives = 181/271 (66.79%), Query Frame = 0 
Query:  175 IAVLGPHDAPHMEELNNLPAEAKVVVQGQALEDFEAVDSSLLASVDVLL---LAPPAG-RDLLSALWPRFPNVKWIHCIFAGVDHVLFPALIHSSIPLTNARGLFSSSLAEYSILAMNYFAKDVPRLKAQQQEKIWEKFCVQELKGATVGIVGYGDIGQACGKLAKAFGMRVIALKRRPDVNARD---GIADVVMGRDQINDLIAQSDYLIVATALTPETRGIISAKELACAKAGLVVINMGRGPLIVEEDLVQALTQGTIKGAALDVFDT 439
            + V GP D+P +  L  LPA   VV  G+  EDF  +      SV+VLL   +   AG RD + ALWPR PN+ W+H   AG++H+LFP L+   + LTNA+G++S SLAEY + A N+FAKD+PRL+ QQ    WE + V+EL+G T+GI+GYGDIGQACG++AKAF MRV+AL+RR +++  +   G+ + +   DQ++ L+A SDY+++AT  TP T  ++ A  +A  +   V IN+GRG  + E  L++AL  G I+GAALDVFDT
Sbjct:   18 LIVSGP-DSPELSVLQRLPAGVTVVATGRTPEDFAHLSPQQWESVNVLLNCGVGKNAGKRDDIRALWPRLPNLVWMHSASAGLEHLLFPELVEGPVVLTNAKGVYSHSLAEYCLTACNWFAKDLPRLRRQQAAAQWEPYDVEELRGKTLGIIGYGDIGQACGRIAKAFRMRVVALRRRTELSEEEKAAGVVEKIFPPDQLHALMADSDYVVMATPHTPATHRMVDAAAIAAMRPHGVFINLGRGKCVDEAALIEALQAGRIRGAALDVFDT 287
The following BLAST results are available for this feature:
BLAST of NO24G00160.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KXZ49056.14.600e-6147.23hypothetical protein GPECTOR_23g141 [Gonium pector... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00160NO24G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00160.2NO24G00160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00160.2.cds1NO24G00160.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds2NO24G00160.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds3NO24G00160.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds4NO24G00160.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds5NO24G00160.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds6NO24G00160.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds7NO24G00160.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds8NO24G00160.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds9NO24G00160.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00160.2.cds10NO24G00160.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00160.2 ID=NO24G00160.2|Name=NO24G00160.2|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp
TGGCCTGTGAGATGTGTAGTGAGGACGGTGAGACCTCGCAGCCATTGCAC
ATCTACAACTTGGTAGCTTGCTTGCTTTATGCTCCTCAAGGAGGACCGAG
AGCATCGCATTCATCGTCAGCGACGCTGTTTGGTCCAGCATTAATGACAG
AAATACAAGAATGATGAATTATGCTACTTGGAGCTGTTGAGGAATCATGG
GGGCGGGCGTGCGGAGGAGGGAACGAGGAAGGGAAGGATGTAGACTCTCC
ATTGGATAGAGGGAGGAGGCCACGGGCGGATCTCACCCTCTCGGAACAAG
AGCAGCAGCTTCTTCAAGGAGCACGTTGCAAAGCGAAGACAAACCGACAG
CGACAGATGCCCAGTTTGTGCTACATGCACCCACTTCCTCTGCGAAGGCC
CCTGCTATCCTTTCTCTCTTCCGCGTCCTTGTCCTCGTCCAAGGCCCTGC
GTGCAGCGATCAACAGCAACGGCAGCAGCAAGATCAACACAAGCAGCAGC
AGGAACGTCAGCCCGGGTTTCTCCTCTTCCTCCTCCTACCCTCACCAGCG
GACCTTCTTTTCCTTTTCATCCTCATCCTCGTCCTCGCCTGATTCTGATA
CTGACTCAGCCCCTCCCTCCATCCCTTCCAACCGCCTCCGTCGCACCCGG
CGTCCCCAGATTATCATGCGCAAGGAAATGGACGAATGCCGCATTGCCGT
GCTCGGTCCCCACGATGCTCCTCACATGGAGGAGCTAAACAATCTGCCGG
CCGAGGCCAAGGTGGTGGTGCAAGGCCAGGCATTAGAAGACTTCGAGGCT
GTAGACTCGTCCCTCCTCGCCAGCGTCGACGTCCTCCTCCTCGCTCCGCC
CGCCGGCCGTGACCTTCTCTCTGCCCTCTGGCCTCGCTTTCCCAACGTGA
AGTGGATCCATTGCATCTTCGCAGGCGTCGATCACGTCCTCTTCCCCGCC
CTCATCCACTCCTCCATTCCTCTCACCAACGCCCGCGGTCTTTTCTCCTC
CTCCCTTGCTGAATATAGCATCCTCGCCATGAACTACTTTGCGAAGGACG
TGCCTCGGCTGAAGGCTCAGCAACAAGAGAAGATATGGGAGAAGTTTTGC
GTCCAGGAACTCAAGGGAGCCACCGTCGGCATCGTCGGCTACGGCGATAT
CGGGCAGGCCTGTGGGAAGCTTGCGAAGGCATTCGGCATGCGCGTCATTG
CCCTTAAGCGACGGCCGGACGTTAACGCGAGGGACGGCATCGCCGACGTA
GTCATGGGACGAGACCAGATCAACGATCTGATCGCCCAGTCCGACTACCT
CATTGTCGCCACTGCATTGACGCCTGAGACACGCGGCATCATCTCCGCGA
AGGAGCTGGCCTGCGCCAAGGCCGGCTTGGTAGTGATCAATATGGGCCGA
GGTCCGTTGATAGTGGAGGAGGATTTAGTGCAGGCGCTGACTCAGGGAAC
GATCAAGGGGGCGGCGCTCGATGTCTTCGACACGGGTAAGAGGGGAGGGA
GTGAGGGAGGGGGTTTCTCAAGGAGGGGCATTTAGTGTTGGCGTGACGGT
GGTGGTGGCAGACGGATGCATTAATATAAGTCGGTGGCGTGGGACCTCCC
TGGTGACACGTATCATCCCACAGGCCATTCCCTCCCTCCTTCCCTCCCTC
CTTCCTTCCCCCTTCTCTCCATCCTCCCCTCTCTTGGTCGAACCACCCCC
GTGCATGCGCCATGTTCACCGCACGCCGACCTGAGCAGAGTAGCATCTGA
TGCCTTCAGAGTAGCATCTGATGCCTTCTCTTTTCACCTGAACCTCAACC
TTCTTTCCTCCCTTCTCTCTACCTCTCCTTTTTCTATTAATCTAGAACCT
CTTCCTCCCGATTCTCCCTTTTGGGGCTTGTCGAACGTCCTCCTATCCCC
TCACAATATGGACATGACCACGACCTTTATGAACGAGTCCGTGCGGTTCT
TCACAGAGAACTGCGGGCGATTCGTGAAGGGCGGAGCCCTGCGAAACCTC
GTTGACAAGAAGGCAGGATACTGATGGGGATGGAGGAATAAAAGGAGAGA
GGAGAGGGGACGAAGGGAGGATAATTTTAAGGGAGTAGAAAAACATTAAT
GGAAGGAAAGAAAGATTCTGCCAGAAATTGATCAAGCAAAAGAAATAAA
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protein sequence of NO24G00160.2

>NO24G00160.2-protein ID=NO24G00160.2-protein|Name=NO24G00160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MLLGAVEESWGRACGGGNEEGKDVDSPLDRGRRPRADLTLSEQEQQLLQG
ARCKAKTNRQRQMPSLCYMHPLPLRRPLLSFLSSASLSSSKALRAAINSN
GSSKINTSSSRNVSPGFSSSSSYPHQRTFFSFSSSSSSSPDSDTDSAPPS
IPSNRLRRTRRPQIIMRKEMDECRIAVLGPHDAPHMEELNNLPAEAKVVV
QGQALEDFEAVDSSLLASVDVLLLAPPAGRDLLSALWPRFPNVKWIHCIF
AGVDHVLFPALIHSSIPLTNARGLFSSSLAEYSILAMNYFAKDVPRLKAQ
QQEKIWEKFCVQELKGATVGIVGYGDIGQACGKLAKAFGMRVIALKRRPD
VNARDGIADVVMGRDQINDLIAQSDYLIVATALTPETRGIISAKELACAK
AGLVVINMGRGPLIVEEDLVQALTQGTIKGAALDVFDTGKRGGSEGGGFS
RRGI*
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mRNA from alignment at chr24:48655..52557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00160.2 ID=NO24G00160.2|Name=NO24G00160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3903bp|location=Sequence derived from alignment at chr24:48655..52557+ (Nannochloropsis oceanica)
TGGCCTGTGAGATGTGTAGTGAGGACGGTGAGACCTCGCAGCCATTGCAC
ATCTACAACTTGGTAGCTTGCTTGCTTTATGCTCCTCAAGGAGGACCGAG
AGCATCGCATTCATCGTCAGCGACGCTGTTTGGTCCAGCATTAATGACAG
AAATACAAGAATGATGAATTATGCTACTTGGAGCTGTTGAGGAATCATGG
GGGCGGGCGTGCGGAGGAGGGAACGAGGAAGGGAAGGATGTAGACTCTCC
ATTGGATAGAGGGAGGAGGCCACGGGCGGATCTCACCCTCTCGGAACAAG
AGCAGCAGCTTCTTCAAGGAGCACGTTGCAAAGCGAAGACAAACCGACAG
CGACAGATGCCCAGGCAAGTCGGAAGGGGTGCTCACGCCCTGGCATATTT
CTGCGCGACGCGATGTGGTCGGCTGACAAGGTCTTGGTTGTTGGCATGTC
TCATCTTCAAGAAATGTCTCCAATAACCTCCTCCTCCCCCGGATTCTTCC
TACCTCCCTACCTCTCTCACCTTAATCCTGTTTCCTCCTATTAACCCTTC
GCAACTCGAAACAGTTTGTGCTACATGCACCCACTTCCTCTGCGAAGGCC
CCTGCTATCCTTTCTCTCTTCCGCGTCCTTGTCCTCGTCCAAGGCCCTGC
GTGCAGCGATCAACAGCAACGGCAGCAGCAAGATCAACACAAGCAGCAGC
AGGAACGTCAGCCCGGGTTTCTCCTCTTCCTCCTCCTACCCTCACCAGCG
GACCTTCTTTTCCTTTTCATCCTCATCCTCGTCCTCGCCTGATTCTGATA
CTGACTCAGCCCCTCCCTCCATCCCTTCCAACCGCCTCCGTCGCACCCGG
CGTCCCCAGATTATCATGCGCAAGGAAATGGACGGTAATTGTACATGAGC
CCTCATCCTCTCCCTCCTTCCCCACCTCCCTCCTTCCCCACCTCCCTCCT
TCCCCACCTCCCTCCTTCCCCACCTCCCTCCTTCCCCCCTCCCTCCTTTA
CAAACTCGTACACGAGTGCATAAGTCCGATTTTCCGCCTCCAATCCTTAG
TTCCTTCTACCCTTCTCTCCATCCTTCCCTCCCTCCTTCAGAATGCCGCA
TTGCCGTGCTCGGTCCCCACGATGCTCCTCACATGGAGGAGCTAAACAAT
CTGCCGGCCGAGGCCAAGGTGGTGGTGCAAGGCCAGGCATTAGAAGACTT
CGAGGTAAGTCTCCCCGCTCGCCCCTGCTCCCTCCCTTCCTCCCTCTCTT
CCCTCCCTCTCTTTCTTTCCTTGTCCCCTCCCCAAATTGAAGTGAAGGTG
GTGGTATGCCTTCCCTGTTTCCCTCCCTCCCTCTCCCCCTCCCCCCTCCT
CAACTCCTTCCCTTCCCTCCTTCTCCCCTCTCCTTTATCCAACCCCTCCC
TCCCTCCCCCCTCCTTCCCCCCCCTTACTCAGGCTGTAGACTCGTCCCTC
CTCGCCAGCGTCGACGTCCTCCTCCTCGCTCCGCCCGCCGGCCGTGACCT
TCTCTCTGCCCTCTGGCCTCGCTTTCCCAACGTGAAGTGGATCCATTGCA
TCTTCGCAGGTACCTCCCTCCCTCCCTCCCTCCCTCAGGAAACGTTTTCT
TCCCCGCCCCCCATCAACTCTTCCCTTCCTCCCTTCCTCCCTCCCTCCCT
CCCCTCCCCAGGCGTCGATCACGTCCTCTTCCCCGCCCTCATCCACTCCT
CCATTCCTCTCACCAACGCCCGCGGTCTTTTCTCCTCCTCCCTTGCTGAA
TATAGCATCCTCGTACGTCCCCTCCCTCCCTCCCTCCCTCCTCCCTCCTT
TCCTTCCTCCCTTTCTCCTGGTCACCGTCCTCGTCTCCCGTAGGTCGAGT
CCCTCTCTCACTCCCTCCCCTCCTCCCTCCCTCCCTCCCACCCTCCCACC
CTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCGGATGAAGAA
GAGGAGCAAGTCAAAGACACTCCCCACCCACACCCTTTCCCTCCCTCCCT
CCCTCCCTCCCTCAGGCCATGAACTACTTTGCGAAGGACGTGCCTCGGCT
GAAGGCTCAGCAACAAGAGAAGATATGGGAGAAGTTTTGCGTCCAGGAAC
TCAAGGGAGCCACCGTCGGCATCGTCGGGTAAGGAAGAGGGAGGAAGGAA
GGGAGGGAGGGAGGGAAGAAGGGAGGACATGGAGCCGGTGGATGCCTGGG
CTGTGCTCGATATCCCGTGGCCTCCCTCCCTCCCTTCCTCCCTCCCTCCC
TCCAGCTAGGGCGACGACGGGCATACACTTACCCTCCCTCTGCCTCCCTC
CCTCTGCCTCCCTCCCTCTGCCTCCCTCCCTCCCTCCCTCCCTCCAGCTA
CGGCGATATCGGGCAGGCCTGTGGGAAGCTTGCGAAGGCATTCGGCATGC
GCGTCATTGCCCTTAAGGTCCGCCCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCCTCCCTCCATCCCTTTGCCTCCCTCCCTCTTTGCCTCTCTCTATCCC
TCCCTCCATACCCGCAACTCTTCCTCCCTCCCTTCCTCCCGCTCTTCCTT
CTCATGACACCTTCTCATGTGCTCGTCCGCTCCCTCCCTCCCTCCCTCCG
TCCCTCTCTAGCGACGGCCGGACGTTAACGCGAGGGACGGCATCGCCGAC
GTAGTCATGGGACGAGACCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGAACG
ATGGTGGGAAGCAAAGGGAGGGAGGAAGAGACGAACCTTGGAGTGCTGTA
TCGTCTCGTGGGTATCAACAACGCTTTCCCTCCCTCCCCTCCCTCCCATC
CCTCCCTCTTTTCCTCCCACCCTCCCTCCCTAGATCAACGATCTGATCGC
CCAGTCCGACTACCTCATTGTCGCCACTGCATTGACGCCTGAGACACGCG
GCATCATCTCCGCGAAGGTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TTACTTTCTTTCGACCTTTGGTTGGAGCCCTGCCACGCTTAGATCTCTCA
TCCCCACTGCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCT
CCTCAGGAGCTGGCCTGCGCCAAGGCCGGCTTGGTAGTGATCAATATGGG
CCGAGGTCCGTTGATAGTGGAGGAGGATTTAGTGCAGGCGCTGACTCAGG
GAACGATCAAGGGGGCGGCGCTCGATGTCTTCGACACGGGTAAGAGGGGA
GGGAGTGAGGGAGGGGGTTTCTCAAGGAGGGGCATTTAGTGTTGGCGTGA
CGGTGGTGGTGGCAGACGGATGCATTAATATAAGTCGGTGGCGTGGGACC
TCCCTGGTGACACGTATCATCCCACAGGCCATTCCCTCCCTCCTTCCCTC
CCTCCTTCCTTCCCCCTTCTCTCCATCCTCCCCTCTCTTGGTCGAACCAC
CCCCGTGCATGCGCCATGTTCACCGCACGCCGACCTGAGCAGAGTAGCAT
CTGATGCCTTCAGAGTAGCATCTGATGCCTTCTCTTTTCACCTGAACCTC
AACCTTCTTTCCTCCCTTCTCTCTACCTCTCCTTTTTCTATTAATCTAGA
ACCTCTTCCTCCCGATTCTCCCTTTTGGGGCTTGTCGAACGTCCTCCTAT
CCCCTCACAATATGGACATGACCACGACCTTTATGAACGAGTCCGTGCGG
TTCTTCACAGAGAACTGCGGGCGATTCGTGAAGGGCGGAGCCCTGCGAAA
CCTCGTTGACAAGAAGGCAGGATACTGATGGGGATGGAGGAATAAAAGGA
GAGAGGAGAGGGGACGAAGGGAGGATAATTTTAAGGGAGTAGAAAAACAT
TAATGGAAGGAAAGAAAGATTCTGCCAGAAATTGATCAAGCAAAAGAAAT
AAA
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Coding sequence (CDS) from alignment at chr24:48655..52557+

>NO24G00160.2 ID=NO24G00160.2|Name=NO24G00160.2|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr24:48655..52557+ (Nannochloropsis oceanica)
ATGCTACTTGGAGCTGTTGAGGAATCATGGGGGCGGGCGTGCGGAGGAGG
GAACGAGGAAGGGAAGGATGTAGACTCTCCATTGGATAGAGGGAGGAGGC
CACGGGCGGATCTCACCCTCTCGGAACAAGAGCAGCAGCTTCTTCAAGGA
GCACGTTGCAAAGCGAAGACAAACCGACAGCGACAGATGCCCAGTTTGTG
CTACATGCACCCACTTCCTCTGCGAAGGCCCCTGCTATCCTTTCTCTCTT
CCGCGTCCTTGTCCTCGTCCAAGGCCCTGCGTGCAGCGATCAACAGCAAC
GGCAGCAGCAAGATCAACACAAGCAGCAGCAGGAACGTCAGCCCGGGTTT
CTCCTCTTCCTCCTCCTACCCTCACCAGCGGACCTTCTTTTCCTTTTCAT
CCTCATCCTCGTCCTCGCCTGATTCTGATACTGACTCAGCCCCTCCCTCC
ATCCCTTCCAACCGCCTCCGTCGCACCCGGCGTCCCCAGATTATCATGCG
CAAGGAAATGGACGAATGCCGCATTGCCGTGCTCGGTCCCCACGATGCTC
CTCACATGGAGGAGCTAAACAATCTGCCGGCCGAGGCCAAGGTGGTGGTG
CAAGGCCAGGCATTAGAAGACTTCGAGGCTGTAGACTCGTCCCTCCTCGC
CAGCGTCGACGTCCTCCTCCTCGCTCCGCCCGCCGGCCGTGACCTTCTCT
CTGCCCTCTGGCCTCGCTTTCCCAACGTGAAGTGGATCCATTGCATCTTC
GCAGGCGTCGATCACGTCCTCTTCCCCGCCCTCATCCACTCCTCCATTCC
TCTCACCAACGCCCGCGGTCTTTTCTCCTCCTCCCTTGCTGAATATAGCA
TCCTCGCCATGAACTACTTTGCGAAGGACGTGCCTCGGCTGAAGGCTCAG
CAACAAGAGAAGATATGGGAGAAGTTTTGCGTCCAGGAACTCAAGGGAGC
CACCGTCGGCATCGTCGGCTACGGCGATATCGGGCAGGCCTGTGGGAAGC
TTGCGAAGGCATTCGGCATGCGCGTCATTGCCCTTAAGCGACGGCCGGAC
GTTAACGCGAGGGACGGCATCGCCGACGTAGTCATGGGACGAGACCAGAT
CAACGATCTGATCGCCCAGTCCGACTACCTCATTGTCGCCACTGCATTGA
CGCCTGAGACACGCGGCATCATCTCCGCGAAGGAGCTGGCCTGCGCCAAG
GCCGGCTTGGTAGTGATCAATATGGGCCGAGGTCCGTTGATAGTGGAGGA
GGATTTAGTGCAGGCGCTGACTCAGGGAACGATCAAGGGGGCGGCGCTCG
ATGTCTTCGACACGGGTAAGAGGGGAGGGAGTGAGGGAGGGGGTTTCTCA
AGGAGGGGCATTTAG
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Synonyms
Publications