NO24G00120.1, NO24G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00120.1
Unique NameNO24G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr24:39788..41629 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:39788..41629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00120NO24G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00120.1NO24G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00120.1.cds1NO24G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds2NO24G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds3NO24G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds4NO24G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds5NO24G00120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds6NO24G00120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds7NO24G00120.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00120.1.cds8NO24G00120.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00120.1 ID=NO24G00120.1|Name=NO24G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGGTGGCCGTTGTGTCGGGTCGGATAAGAAGAAGAGCAGTTGTGGCACG
GGCACCGGTTCTCCTCCTTCCGCTCCTCCTTCCGCTCCTCCTGCTCCTCC
TCCTACAACAGCCACAGCAAGTCAACGCCGGCGCCTACAACCCACCCCTG
GGCGAGGACGCACGGCTGGATCAGATTGAGGACTACCCGGATTGGTATGA
GGTCGATCCCCTCACCCTCGACCATGAAGGTCACTCTCGAACCAAGCGGA
TTCATCCGCATCGTCTCCTCCTCCCCCCGGCCAGCCCTCTCTTCATGGGC
TTGTGGGAGCCCTACACCAGCCTCTATAAACGCACTACTACTGGCTTCGG
AATGTTGTTCCGCCGTTGGAAGTCCGAATGCGCCCAGGACATGGAGTATC
TTTTTTTCAAAATGCAAATGCGCCCTCCCGCCTTCCAGCCCGGCTGTATG
AGCTTCAAGACCGGAGAGATCTATGACGAGGCCGGTGCTCGCCTTGGCCG
CTTCAAGACGAAACTTCCTCACAATAAGGCACTCATCGACTCCAATTTCA
GGGCGCACCGATCGTGGATCAAGCAGCGGCCCTGGTAG
back to top

protein sequence of NO24G00120.1

>NO24G00120.1-protein ID=NO24G00120.1-protein|Name=NO24G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVAVVSGRIRRRAVVARAPVLLLPLLLPLLLLLLLQQPQQVNAGAYNPPL
GEDARLDQIEDYPDWYEVDPLTLDHEGHSRTKRIHPHRLLLPPASPLFMG
LWEPYTSLYKRTTTGFGMLFRRWKSECAQDMEYLFFKMQMRPPAFQPGCM
SFKTGEIYDEAGARLGRFKTKLPHNKALIDSNFRAHRSWIKQRPW*
back to top

mRNA from alignment at chr24:39788..41629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00120.1 ID=NO24G00120.1|Name=NO24G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at chr24:39788..41629- (Nannochloropsis oceanica)
ATGGTGGCCGTTGTGTCGGGTCGGATAAGAAGAAGAGCAGTTGTGGCACG
GGCACCGGTTCTCCTCCTTCCGCTCCTCCTTCCGCTCCTCCTGCTCCTCC
TCCTACAACAGCCACAGCAAGTCAACGCCGGCGCCTACAACCCACGTAAG
TCTCGAGGATGACATTGAAAGATCACAGAGGAGGAGAGGGAGGGAAAAAG
GGGTGCGGAGAGTGCGTGCGTGCATGGGAACCATACGGAGCCTCGATGAC
TACCAATTATGCACACAAACCCCGTGTGCCTCCCTGCTGTGCACATTGCC
AGCTGATATCCCTCTCTCCCTCGCTACCCCCTCTTCCTGTGTGCTTGCTA
TCCTGGGCGTTGTGAGGGGCCTTGTGAGGGGCCTTGTGAGTAGCTACATG
ATTTCCAAATCTTATCCAAGCATCCTCCCTCCCTCTACCTCCCTTTCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAGCCCTGGGCGAGGACGC
ACGGCTGGATCAGATTGAGGACTACCCGGATTGGTATGAGGTGCGTATTG
ACGGTAGGACGGGGAGGAAGGGAGGGAGGGGCAAGAAAAAGAAGTGAAGC
TGAGGATGGAAGCGGCTCTTTTTCTTCCCATCAAGTCTCAATTGTAGCCC
TCCCTCCCCCCTCCCCCCCTCCCCCCTTTCTCCCTCTTTCTCCTCCCTCG
TAGGTCGATCCCCTCACCCTCGGTGCCCGCGAATATATACTTGACATTCG
TGCCGAGAAGGGTGTGCATGGCTTGCCTAAGACCATGAAGGTCACTCTCG
AACCAAGCGGGTAGGTGCTGGCTTGTCCTCCCTCCCTCCCTCTCTCCCTC
CCTCCCTCTCTCCCTCCCTCCTTCTCTCCCTCGCAGCCTTTACTCTCACC
GCCTCATCTTTGTCTTGCATTCCTTTTTCATATCCGCAATTTTTCTTCCT
CGCCCCATTCCCAACGCCTCACCTTCGTTCCCTCCCTCCCTCCCTCCCTC
CCTCTTTACCTCCCACAGATTCATCCGCATCGTCTCCTCCTCCCCCCGGC
CAGCCCTCTCTTCATGGGCTTGTGGGAGCCCTACACCAGCCTCTATAAAC
GCACTACTACTGGCTTCGGAATGTTGTTCCGGTATAGAAGCCCACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCTTTCTGTTCTCTTTAGT
GTCCCCAGCAACCTTGTCAATTCCCTTAATTTGGCAATCATATCACCCAC
CTCTTCCTGAACCTCGCCCTCCATCCCTCCCACCCTCCCTCTCTCTCCCC
CTCCCTCCCTCCCTCCCTCCCCAGCCGTTGGAAGTCCGAATGCGCCCAGG
ACATGGAGTATCTTTTTTTCAAAATGCAAATGCGCCCTCCCGCCTTCCAG
CCCGGCTGTATGAGCTTCAAGGTAAGCAAGCCCTCCCTCCCTCCTTCCCT
CCCTCCCCCTCTCCCTCCCTTCCCCTCCAATCACTAACACATTTGTCGTG
ATCACATCATCGCTGACACACCTCCCTCCTTCCGTCCCTCCCTCCCTCCC
TCCCTCCAGACCGGAGAGATCTATGACGAGGCCGGTGCTCGCCTTGGCCG
CTTCAAGACGAAACTTCCTCACAATAAGGCACTCATCGACTCCAATTTCA
GGTGCGCCCCTCCCTCCCTCCCTCCCTCCCCCCTCCTTCCCTCCTCCCTA
CCTCGTTTCTGCCGCGTTTCAGGCATGCAAGGATGGGTTCTTGTCCAGGC
GAGAGGGAGCATGGACTGATATTCCCTGCTTATGATTCATAATGATATGT
CGCAGGGCGCACCGATCGTGGATCAAGCAGCGGCCCTGGTAG
back to top

Coding sequence (CDS) from alignment at chr24:39788..41629-

>NO24G00120.1 ID=NO24G00120.1|Name=NO24G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr24:39788..41629- (Nannochloropsis oceanica)
ATGGTGGCCGTTGTGTCGGGTCGGATAAGAAGAAGAGCAGTTGTGGCACG
GGCACCGGTTCTCCTCCTTCCGCTCCTCCTTCCGCTCCTCCTGCTCCTCC
TCCTACAACAGCCACAGCAAGTCAACGCCGGCGCCTACAACCCACCCCTG
GGCGAGGACGCACGGCTGGATCAGATTGAGGACTACCCGGATTGGTATGA
GGTCGATCCCCTCACCCTCGACCATGAAGGTCACTCTCGAACCAAGCGGA
TTCATCCGCATCGTCTCCTCCTCCCCCCGGCCAGCCCTCTCTTCATGGGC
TTGTGGGAGCCCTACACCAGCCTCTATAAACGCACTACTACTGGCTTCGG
AATGTTGTTCCGCCGTTGGAAGTCCGAATGCGCCCAGGACATGGAGTATC
TTTTTTTCAAAATGCAAATGCGCCCTCCCGCCTTCCAGCCCGGCTGTATG
AGCTTCAAGACCGGAGAGATCTATGACGAGGCCGGTGCTCGCCTTGGCCG
CTTCAAGACGAAACTTCCTCACAATAAGGCACTCATCGACTCCAATTTCA
GGGCGCACCGATCGTGGATCAAGCAGCGGCCCTGGTAG
back to top
Synonyms
Publications