NO24G00040.3, NO24G00040.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G00040.3
Unique Name	NO24G00040.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2066
Alignment location	chr24:9946..12519 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:9946..12519 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G00040.3 vs.
Match: EWM20443.1 (dihydrofolate reductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.000e-15
Identity = 59/99 (59.60%), Postives = 65/99 (65.66%), Query Frame = 0

Query:   28 FRSSSVSPPSSTSFSSFSSHHQHHGHDHHQHHGHDHHQHHGHDQ---DEDDVRLIACVAPPNLTIGKGGQLPWDLPEDRKYFFHCTQGHVLVLGRRSYE 124
            F SSS S  SS+SF+  SS     G          H             DDVR+IACVAPPNLTIGKGGQLPWDLPEDR+YFFHCT+GH+LVLGRRSYE
Sbjct:   78 FSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYE 176

The following BLAST results are available for this feature:

BLAST of NO24G00040.3 vs.

BLAST of NO24G00040.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20443.1	1.000e-15	59.60	dihydrofolate reductase, partial [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G00040	NO24G00040	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00040.3	NO24G00040.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00040.3.cds1	NO24G00040.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00040.3.cds2	NO24G00040.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00040.3.cds3	NO24G00040.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00040.3.cds4	NO24G00040.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:9946..12519-
coding sequence from alignment at chr24:9946..12519-

mRNA sequence

>NO24G00040.3 ID=NO24G00040.3|Name=NO24G00040.3|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGACCGGAAGTAC
TTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTA
CGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCCC
GCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAG
GCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGAGAGGGAAT
GATCACTTGGATCGGAGGTGAGGGAATGGAGAGGGAGGAGGGAGGGAGGG
AGGGACAGGAATTGAAGGCAAGGGAGGCAGGTCGGGGGTTATATGAAGGA
CGAATTTGATATGAAAATCTTTGAATCGGGTCATGATAAAAGAGAAGGAA
AAAAGGAGGGAGGCCAGGGGGAGGAGAGGGCGCAATGAAAATCACTTTTT
CTCTAACCTAATAATGCGCGGACACAGGAGGGCATGACCTGTACCAGCAG
ACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTT
CGAGGTAAGGAAGGGGGAGAGAGTAAAGGTAGGAGGATTGGGAATTAGTG
GGGAGACATTCATACCATGGTTGACAGAAGGAGGTCAGAAAGAAGTAGGG
AATGGCCGCGACGAGAGGAGAAGAATGGAGAGAGAAATGAAGAAGGAAGG
GAGCATGAGAGGAAGAGAGGGACACGGAGAAATGAAGGAAGGGAGTAAGG
AAGAGGATGAAGGAAAGCGGAAGAAGGAGAGGACTGAAAACAATAACCAA
GTCAACTCCCAACCAAGATACTCCACTACAATGATGCATCTTGAAACCTA
CGTCCATATAGGTGCAGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTT
GAGTCATTCCCCCGACTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTG
CACGTTTGGGATCTACGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGA
GAGAGGCAGAGTGAGAGGAAATGAGAAGAAAGGGGTCTGGATGAGCTCCG
ATGACATTTCATTGTACACAAAATAGACCATTTGAAAATGCATGTACTGA
CTATAGTGTTAGGTAA

protein sequence of NO24G00040.3

>NO24G00040.3-protein ID=NO24G00040.3-protein|Name=NO24G00040.3|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLPTHRFARVSSIITNIGSRRRYTFSFFRSSSVSPPSSTSFSSFSSHHQH
HGHDHHQHHGHDHHQHHGHDQDEDDVRLIACVAPPNLTIGKGGQLPWDLP
EDRKYFFHCTQGHVLVLGRRSYEEAGHALPGRETVVVSRTLSSLPDALVA
SSLTEALALAGKIKRRKGREGMITWIGGEGMEREEGGREGQELKAREAGR
GLYEGRI*

mRNA from alignment at chr24:9946..12519-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G00040.3 ID=NO24G00040.3|Name=NO24G00040.3|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGTAGGCAAGGAG
ATAAGGGAAGGAGGGAAAGGGCTGTGACTTTTGAATGTTTTGTAAGTTAC
AAAATGTAAAGAGGGAAGAAGAGAATGAGAGCAAGTGCATATAAACAGTG
ACATGTCTTTGTTGGTGTCTATTACTTGTACAGGACCGGAAGTACTTCTT
TCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTACGAGG
TGCGTGGGAAGGAGGGAGAGACGGGAGAAAGAGCAAAAGGGACTTGAGCG
AGAAAGCAGGAAGAGAGGTAGAGAGAATTTGGGGTGAACTTTCTGCATTG
ATCCTTTATTAATGTTTTCCTGATGCATGCAGGAAGCCGGGCACGCTCTG
CCAGGCCGAGAGACAGTGGTTGTCTCCCGCACGCTCAGGTACCCTCCCCC
TCCCTCCTTCACCCTTCCTCTCATTCCCTCGTTATCCCTTCAGGGGGAAC
GATAATTTATATCATATCATATTCCATAAATCCATCTCTGCCTCTTTTTG
GTCGCCGTTCATTGAGCTTTTGTGCATGTTCATCAGCGATTCTTCCCTCC
CTCCCTCCCTCCCTGCCTCCCTCCCTGCCTCCCTGCCTGCCTGCCTCCCT
CCCTCCCCTCCTCCCTAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCAC
TCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGA
GAGGGAATGATCACTTGGATCGGAGGTGAGGGAATGGAGAGGGAGGAGGG
AGGGAGGGAGGGACAGGAATTGAAGGCAAGGGAGGCAGGTCGGGGGTTAT
ATGAAGGACGAATTTGATATGAAAATCTTTGAATCGGGTCATGATAAAAG
AGAAGGAAAAAAGGAGGGAGGCCAGGGGGAGGAGAGGGCGCAATGAAAAT
CACTTTTTCTCTAACCTAATAATGCGCGGACACAGGAGGGCATGACCTGT
ACCAGCAGACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAG
ACGCACTTCGAGGTAAGGAAGGGGGAGAGAGTAAAGGTAGGAGGATTGGG
AATTAGTGGGGAGACATTCATACCATGGTTGACAGAAGGAGGTCAGAAAG
AAGTAGGGAATGGCCGCGACGAGAGGAGAAGAATGGAGAGAGAAATGAAG
AAGGAAGGGAGCATGAGAGGAAGAGAGGGACACGGAGAAATGAAGGAAGG
GAGTAAGGAAGAGGATGAAGGAAAGCGGAAGAAGGAGAGGACTGAAAACA
ATAACCAAGTCAACTCCCAACCAAGATACTCCACTACAATGATGCATCTT
GAAACCTACGTCCATATAGGTGCAGGGCGGAGACGCCTTCTTCCCTGAGG
CCTGGGTTGAGTCATTCCCCCGACTCCTGTGGCGTTACAAGTCGTTGAGC
TCGCCTTGCACGTTTGGGATCTACGCGGCGGCAGCGAGATCCCTTCCGGA
GGGATTGAGAGAGGCAGAGTGAGAGGAAATGAGAAGAAAGGGGTCTGGAT
GAGCTCCGATGACATTTCATTGTACACAAAATAGACCATTTGAAAATGCA
TGTACTGACTATAGTGTTAGGTAA

Coding sequence (CDS) from alignment at chr24:9946..12519-

>NO24G00040.3 ID=NO24G00040.3|Name=NO24G00040.3|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
ATGCTGCCCACCCACCGCTTCGCGCGTGTATCCTCAATCATCACAAATAT
TGGAAGCAGAAGAAGATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTT
CCCCACCTTCCTCGACTTCGTTTTCTTCATTCTCCTCTCACCATCAACAT
CACGGCCACGATCACCATCAACACCACGGCCACGATCACCATCAACACCA
CGGCCACGACCAAGACGAAGACGATGTCCGCCTAATCGCATGCGTGGCCC
CTCCTAATCTTACTATTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCA
GAGGACCGGAAGTACTTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCT
GGGCCGACGGTCTTACGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGA
CAGTGGTTGTCTCCCGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCC
TCTTCACTCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAA
GGGGAGAGAGGGAATGATCACTTGGATCGGAGGTGAGGGAATGGAGAGGG
AGGAGGGAGGGAGGGAGGGACAGGAATTGAAGGCAAGGGAGGCAGGTCGG
GGGTTATATGAAGGACGAATTTGA

Synonyms

Publications