NO24G00040.2, NO24G00040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00040.2
Unique NameNO24G00040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1856
Alignment locationchr24:9946..12519 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:9946..12519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00040.2 vs.
Match: WP_087022642.1 (hypothetical protein [Butyricicoccus porcorum]; OUM19356.1 hypothetical protein CBW42_13590 [Butyricicoccus porcorum])

HSP 1 Score: 100.5 bits (249), Expect = 9.700e-18
Identity = 57/127 (44.88%), Postives = 75/127 (59.06%), Query Frame = 0 
Query:   76 VRLIACVAPPNLTIGKGGQLPWDLPEDRKYFFHCTQGHVLVLGRRSYEEAGHALPGRETVVVSRTLS-SLPDALVASSLTEALALAGKIKRRKGREGMITWIGGGHDLYQQTMALDRPSFLYLTQTH 202
            + LIA  A  N  IGK G++PWD+P ++  F   T GHV+V+GR++YEE G  LPGRET+VVSRT   + P     S+L +ALALAG             +I GG  LY++  AL     LYLT+ H
Sbjct:    2 IALIAAYAE-NRVIGKDGRIPWDIPAEKHRFRDLTMGHVMVMGRKTYEEIGRPLPGRETIVVSRTKKFNEPHCTTVSNLPQALALAG---------AQDVFICGGAQLYRE--ALPLADILYLTEIH 116
The following BLAST results are available for this feature:
BLAST of NO24G00040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_087022642.19.700e-1844.88hypothetical protein [Butyricicoccus porcorum]; OU... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00040NO24G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00040.2NO24G00040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00040.2.cds1NO24G00040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.2.cds2NO24G00040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.2.cds3NO24G00040.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.2.cds4NO24G00040.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.2.cds5NO24G00040.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00040.2 ID=NO24G00040.2|Name=NO24G00040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGACCGGAAGTAC
TTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTA
CGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCCC
GCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAG
GCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGAGAGGGAAT
GATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGCCC
TCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTAAGG
AAGGGGGAGAGAGTAAAGGTAGGAGGATTGGGAATTAGTGGGGAGACATT
CATACCATGGTTGACAGAAGGAGGTCAGAAAGAAGTAGGGAATGGCCGCG
ACGAGAGGAGAAGAATGGAGAGAGAAATGAAGAAGGAAGGGAGCATGAGA
GGAAGAGAGGGACACGGAGAAATGAAGGAAGGGAGTAAGGAAGAGGATGA
AGGAAAGCGGAAGAAGGAGAGGACTGAAAACAATAACCAAGTCAACTCCC
AACCAAGATACTCCACTACAATGATGCATCTTGAAACCTACGTCCATATA
GGTGCAGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCC
CCCGACTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGG
ATCTACGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGA
GTGAGAGGAAATGAGAAGAAAGGGGTCTGGATGAGCTCCGATGACATTTC
ATTGTACACAAAATAGACCATTTGAAAATGCATGTACTGACTATAGTGTT
AGGTAA
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protein sequence of NO24G00040.2

>NO24G00040.2-protein ID=NO24G00040.2-protein|Name=NO24G00040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MLPTHRFARVSSIITNIGSRRRYTFSFFRSSSVSPPSSTSFSSFSSHHQH
HGHDHHQHHGHDHHQHHGHDQDEDDVRLIACVAPPNLTIGKGGQLPWDLP
EDRKYFFHCTQGHVLVLGRRSYEEAGHALPGRETVVVSRTLSSLPDALVA
SSLTEALALAGKIKRRKGREGMITWIGGGHDLYQQTMALDRPSFLYLTQT
HFEVRKGERVKVGGLGISGETFIPWLTEGGQKEVGNGRDERRRMEREMKK
EGSMRGREGHGEMKEGSKEEDEGKRKKERTENNNQVNSQPRYSTTMMHLE
TYVHIGAGRRRLLP*
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mRNA from alignment at chr24:9946..12519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00040.2 ID=NO24G00040.2|Name=NO24G00040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGTAGGCAAGGAG
ATAAGGGAAGGAGGGAAAGGGCTGTGACTTTTGAATGTTTTGTAAGTTAC
AAAATGTAAAGAGGGAAGAAGAGAATGAGAGCAAGTGCATATAAACAGTG
ACATGTCTTTGTTGGTGTCTATTACTTGTACAGGACCGGAAGTACTTCTT
TCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTACGAGG
TGCGTGGGAAGGAGGGAGAGACGGGAGAAAGAGCAAAAGGGACTTGAGCG
AGAAAGCAGGAAGAGAGGTAGAGAGAATTTGGGGTGAACTTTCTGCATTG
ATCCTTTATTAATGTTTTCCTGATGCATGCAGGAAGCCGGGCACGCTCTG
CCAGGCCGAGAGACAGTGGTTGTCTCCCGCACGCTCAGGTACCCTCCCCC
TCCCTCCTTCACCCTTCCTCTCATTCCCTCGTTATCCCTTCAGGGGGAAC
GATAATTTATATCATATCATATTCCATAAATCCATCTCTGCCTCTTTTTG
GTCGCCGTTCATTGAGCTTTTGTGCATGTTCATCAGCGATTCTTCCCTCC
CTCCCTCCCTCCCTGCCTCCCTCCCTGCCTCCCTGCCTGCCTGCCTCCCT
CCCTCCCCTCCTCCCTAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCAC
TCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGA
GAGGGAATGATCACTTGGATCGGAGGTGAGGGAATGGAGAGGGAGGAGGG
AGGGAGGGAGGGACAGGAATTGAAGGCAAGGGAGGCAGGTCGGGGGTTAT
ATGAAGGACGAATTTGATATGAAAATCTTTGAATCGGGTCATGATAAAAG
AGAAGGAAAAAAGGAGGGAGGCCAGGGGGAGGAGAGGGCGCAATGAAAAT
CACTTTTTCTCTAACCTAATAATGCGCGGACACAGGAGGGCATGACCTGT
ACCAGCAGACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAG
ACGCACTTCGAGGTAAGGAAGGGGGAGAGAGTAAAGGTAGGAGGATTGGG
AATTAGTGGGGAGACATTCATACCATGGTTGACAGAAGGAGGTCAGAAAG
AAGTAGGGAATGGCCGCGACGAGAGGAGAAGAATGGAGAGAGAAATGAAG
AAGGAAGGGAGCATGAGAGGAAGAGAGGGACACGGAGAAATGAAGGAAGG
GAGTAAGGAAGAGGATGAAGGAAAGCGGAAGAAGGAGAGGACTGAAAACA
ATAACCAAGTCAACTCCCAACCAAGATACTCCACTACAATGATGCATCTT
GAAACCTACGTCCATATAGGTGCAGGGCGGAGACGCCTTCTTCCCTGAGG
CCTGGGTTGAGTCATTCCCCCGACTCCTGTGGCGTTACAAGTCGTTGAGC
TCGCCTTGCACGTTTGGGATCTACGCGGCGGCAGCGAGATCCCTTCCGGA
GGGATTGAGAGAGGCAGAGTGAGAGGAAATGAGAAGAAAGGGGTCTGGAT
GAGCTCCGATGACATTTCATTGTACACAAAATAGACCATTTGAAAATGCA
TGTACTGACTATAGTGTTAGGTAA
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Coding sequence (CDS) from alignment at chr24:9946..12519-

>NO24G00040.2 ID=NO24G00040.2|Name=NO24G00040.2|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
ATGCTGCCCACCCACCGCTTCGCGCGTGTATCCTCAATCATCACAAATAT
TGGAAGCAGAAGAAGATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTT
CCCCACCTTCCTCGACTTCGTTTTCTTCATTCTCCTCTCACCATCAACAT
CACGGCCACGATCACCATCAACACCACGGCCACGATCACCATCAACACCA
CGGCCACGACCAAGACGAAGACGATGTCCGCCTAATCGCATGCGTGGCCC
CTCCTAATCTTACTATTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCA
GAGGACCGGAAGTACTTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCT
GGGCCGACGGTCTTACGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGA
CAGTGGTTGTCTCCCGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCC
TCTTCACTCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAA
GGGGAGAGAGGGAATGATCACTTGGATCGGAGGAGGGCATGACCTGTACC
AGCAGACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACG
CACTTCGAGGTAAGGAAGGGGGAGAGAGTAAAGGTAGGAGGATTGGGAAT
TAGTGGGGAGACATTCATACCATGGTTGACAGAAGGAGGTCAGAAAGAAG
TAGGGAATGGCCGCGACGAGAGGAGAAGAATGGAGAGAGAAATGAAGAAG
GAAGGGAGCATGAGAGGAAGAGAGGGACACGGAGAAATGAAGGAAGGGAG
TAAGGAAGAGGATGAAGGAAAGCGGAAGAAGGAGAGGACTGAAAACAATA
ACCAAGTCAACTCCCAACCAAGATACTCCACTACAATGATGCATCTTGAA
ACCTACGTCCATATAGGTGCAGGGCGGAGACGCCTTCTTCCCTGA
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Synonyms
Publications