NO24G00040.1, NO24G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00040.1
Unique NameNO24G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1549
Alignment locationchr24:9946..12519 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:9946..12519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00040.1 vs.
Match: AIA15087.1 (Dihydrofolate reductase, partial [uncultured bacterium])

HSP 1 Score: 109.8 bits (273), Expect = 1.300e-20
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 0 
Query:   86 NLTIGKGGQLPWDLPEDRKYFFHCTQGHVLVLGRRSYEEAGHALPGRETVVVSRTLS-SLPDALVASSLTEALALAGKIKRRKGREGMITWIGGGHDLYQQTMALDRPSFLYLTQTHFEVQGGDAFFPEAWVESF 220
            N  IGK GQLPW LPED K F   T GH +++GR++YE  G  LPGRE +++SR     +P A++A SL E+      I+  + +     ++ GG ++Y  T A+ R   ++LT+ H EV+GGDAFFPE   E+F
Sbjct:   17 NRAIGKDGQLPWRLPEDLKRFKQITLGHPIIMGRKTYESIGRLLPGRENIILSRQSGFVVPGAVIARSLDES------IRHCEAKGIDEAFVIGGAEIY--TQAMKRAQRIHLTEIHHEVEGGDAFFPEIDPEAF 143
The following BLAST results are available for this feature:
BLAST of NO24G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AIA15087.11.300e-2042.96Dihydrofolate reductase, partial [uncultured bacte... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00040NO24G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00040.1NO24G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00040.1.cds1NO24G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.1.cds2NO24G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.1.cds3NO24G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.1.cds4NO24G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.1.cds5NO24G00040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00040.1.cds6NO24G00040.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00040.1 ID=NO24G00040.1|Name=NO24G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGACCGGAAGTAC
TTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTA
CGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGACAGTGGTTGTCTCCC
GCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCACTCACCGAG
GCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGAGAGGGAAT
GATCACTTGGATCGGAGGAGGGCATGACCTGTACCAGCAGACCATGGCCC
TCGACAGGCCCTCGTTCTTGTACTTAACGCAGACGCACTTCGAGGTGCAG
GGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGAGTCATTCCCCCGACT
CCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCACGTTTGGGATCTACG
CGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGAGAGGCAGAGTGAGAG
GAAATGAGAAGAAAGGGGTCTGGATGAGCTCCGATGACATTTCATTGTAC
ACAAAATAGACCATTTGAAAATGCATGTACTGACTATAGTGTTAGGTAA
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protein sequence of NO24G00040.1

>NO24G00040.1-protein ID=NO24G00040.1-protein|Name=NO24G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MLPTHRFARVSSIITNIGSRRRYTFSFFRSSSVSPPSSTSFSSFSSHHQH
HGHDHHQHHGHDHHQHHGHDQDEDDVRLIACVAPPNLTIGKGGQLPWDLP
EDRKYFFHCTQGHVLVLGRRSYEEAGHALPGRETVVVSRTLSSLPDALVA
SSLTEALALAGKIKRRKGREGMITWIGGGHDLYQQTMALDRPSFLYLTQT
HFEVQGGDAFFPEAWVESFPRLLWRYKSLSSPCTFGIYAAAARSLPEGLR
EAE*
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mRNA from alignment at chr24:9946..12519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00040.1 ID=NO24G00040.1|Name=NO24G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
GCTAGCTTGAAGTGCTTGTGCTGTGTGCGTGTAGGTTTAGTGTGGTTCGC
GTTATGGGAAGAGAGAAATGAGGCGACCATTGGACCTAAGGCGGCTGAAC
AAAAATTGGGTCGGCAACGCGACTGCTAAGGTGGGAATAAGAATGCGATG
GTGTCGTCGAGCAAGAGAAGAGGAGGGCATCTTTATGTGTGGTGCTATGA
TGTGTGTTGGAGCCGTGGGTTTGGCTTGATGTAATATGGTATGGGAAGGA
AAGGAAGGGAAAGAGGGATGATGACGTTTCTTGAATCCAATGAAATATGA
GCGCATAATTGCAATGTCTCAAAAAATACCATCCACACACTCCCTCGCAT
ACACACCCGCACGCGCGCGCATAGATGCCTCTACCACCTCGCTAGGCTGC
GATGCGACCACGTCCATTTTAAGTCAAAGGAAGACACTCGCTGATCGGTC
GCAGTCTCGTTTGGGCGATCGCCTCTCGCCACCCCTCCCTCCCTCCCAAT
TTGCCGCCTGTGCCTTGCCTCCAGGTTGCGAGGCGTCGCCTAATCGGTTC
CAACCCTCCTTCACAGGGCCCAAATTCCATCCATCAACATGCTTGGCCTC
CTTGTCATCCTCCTACCCGACGAATTCGGCCTTCGGGTAACCCTTAACCC
CCCCTTACCCTGGCCCCATACACACAGGCACACACATGCTGCCCACCCAC
CGCTTCGCGCGTGTATCCTCAATCATCACAAATATTGGAAGCAGAAGAAG
ATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTTCCCCACCTTCCTCGA
CTTCGTTTTCTTCATTCTCCTCTCACCATCAACATCACGGCCACGATCAC
CATCAACACCACGGCCACGATCACCATCAACACCACGGCCACGACCAAGA
CGAAGACGATGTCCGCCTAATCGCATGCGTGGCCCCTCCTAATCTTACTA
TTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCAGAGGTAGGCAAGGAG
ATAAGGGAAGGAGGGAAAGGGCTGTGACTTTTGAATGTTTTGTAAGTTAC
AAAATGTAAAGAGGGAAGAAGAGAATGAGAGCAAGTGCATATAAACAGTG
ACATGTCTTTGTTGGTGTCTATTACTTGTACAGGACCGGAAGTACTTCTT
TCATTGCACCCAGGGGCACGTGCTGGTGCTGGGCCGACGGTCTTACGAGG
TGCGTGGGAAGGAGGGAGAGACGGGAGAAAGAGCAAAAGGGACTTGAGCG
AGAAAGCAGGAAGAGAGGTAGAGAGAATTTGGGGTGAACTTTCTGCATTG
ATCCTTTATTAATGTTTTCCTGATGCATGCAGGAAGCCGGGCACGCTCTG
CCAGGCCGAGAGACAGTGGTTGTCTCCCGCACGCTCAGGTACCCTCCCCC
TCCCTCCTTCACCCTTCCTCTCATTCCCTCGTTATCCCTTCAGGGGGAAC
GATAATTTATATCATATCATATTCCATAAATCCATCTCTGCCTCTTTTTG
GTCGCCGTTCATTGAGCTTTTGTGCATGTTCATCAGCGATTCTTCCCTCC
CTCCCTCCCTCCCTGCCTCCCTCCCTGCCTCCCTGCCTGCCTGCCTCCCT
CCCTCCCCTCCTCCCTAGCTCCCTCCCCGACGCCCTAGTCGCCTCTTCAC
TCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAAGGGGAGA
GAGGGAATGATCACTTGGATCGGAGGTGAGGGAATGGAGAGGGAGGAGGG
AGGGAGGGAGGGACAGGAATTGAAGGCAAGGGAGGCAGGTCGGGGGTTAT
ATGAAGGACGAATTTGATATGAAAATCTTTGAATCGGGTCATGATAAAAG
AGAAGGAAAAAAGGAGGGAGGCCAGGGGGAGGAGAGGGCGCAATGAAAAT
CACTTTTTCTCTAACCTAATAATGCGCGGACACAGGAGGGCATGACCTGT
ACCAGCAGACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAG
ACGCACTTCGAGGTAAGGAAGGGGGAGAGAGTAAAGGTAGGAGGATTGGG
AATTAGTGGGGAGACATTCATACCATGGTTGACAGAAGGAGGTCAGAAAG
AAGTAGGGAATGGCCGCGACGAGAGGAGAAGAATGGAGAGAGAAATGAAG
AAGGAAGGGAGCATGAGAGGAAGAGAGGGACACGGAGAAATGAAGGAAGG
GAGTAAGGAAGAGGATGAAGGAAAGCGGAAGAAGGAGAGGACTGAAAACA
ATAACCAAGTCAACTCCCAACCAAGATACTCCACTACAATGATGCATCTT
GAAACCTACGTCCATATAGGTGCAGGGCGGAGACGCCTTCTTCCCTGAGG
CCTGGGTTGAGTCATTCCCCCGACTCCTGTGGCGTTACAAGTCGTTGAGC
TCGCCTTGCACGTTTGGGATCTACGCGGCGGCAGCGAGATCCCTTCCGGA
GGGATTGAGAGAGGCAGAGTGAGAGGAAATGAGAAGAAAGGGGTCTGGAT
GAGCTCCGATGACATTTCATTGTACACAAAATAGACCATTTGAAAATGCA
TGTACTGACTATAGTGTTAGGTAA
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Coding sequence (CDS) from alignment at chr24:9946..12519-

>NO24G00040.1 ID=NO24G00040.1|Name=NO24G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr24:9946..12519- (Nannochloropsis oceanica)
ATGCTGCCCACCCACCGCTTCGCGCGTGTATCCTCAATCATCACAAATAT
TGGAAGCAGAAGAAGATACACCTTCTCCTTCTTTCGCTCCTCCTCTGTTT
CCCCACCTTCCTCGACTTCGTTTTCTTCATTCTCCTCTCACCATCAACAT
CACGGCCACGATCACCATCAACACCACGGCCACGATCACCATCAACACCA
CGGCCACGACCAAGACGAAGACGATGTCCGCCTAATCGCATGCGTGGCCC
CTCCTAATCTTACTATTGGCAAGGGCGGCCAGCTACCGTGGGATCTACCA
GAGGACCGGAAGTACTTCTTTCATTGCACCCAGGGGCACGTGCTGGTGCT
GGGCCGACGGTCTTACGAGGAAGCCGGGCACGCTCTGCCAGGCCGAGAGA
CAGTGGTTGTCTCCCGCACGCTCAGCTCCCTCCCCGACGCCCTAGTCGCC
TCTTCACTCACCGAGGCCCTGGCGCTAGCCGGGAAAATCAAAAGGAGAAA
GGGGAGAGAGGGAATGATCACTTGGATCGGAGGAGGGCATGACCTGTACC
AGCAGACCATGGCCCTCGACAGGCCCTCGTTCTTGTACTTAACGCAGACG
CACTTCGAGGTGCAGGGCGGAGACGCCTTCTTCCCTGAGGCCTGGGTTGA
GTCATTCCCCCGACTCCTGTGGCGTTACAAGTCGTTGAGCTCGCCTTGCA
CGTTTGGGATCTACGCGGCGGCAGCGAGATCCCTTCCGGAGGGATTGAGA
GAGGCAGAGTGA
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Synonyms
Publications