NO24G00020.1, NO24G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00020.1
Unique NameNO24G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2705
Alignment locationchr24:4044..6748 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:4044..6748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00020.1 vs.
Match: EWM20448.1 (hypothetical protein Naga_101516g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 106.7 bits (265), Expect = 3.000e-19
Identity = 100/266 (37.59%), Postives = 133/266 (50.00%), Query Frame = 0 
Query:   77 PGEEQQQQVGQTEGEKQTAEFLLLRRARRSKCVSGPVEGPWAGMKGWECRSMSVEVAKMLLKMEKGQLGEDLRQCNLAARARRAAVREEMILVTTEEAEMVDQARVLVLAEETEKQEKSALPLSPTKIKTKTQNIAVTATGSPVAMDVGGLSGSSSCSNKLPPIPLPPTEALVEERPVSKALMACVMAREAKSRFAAAASAAAAAAPGGGNAATAKDAASAVVAVVAPSALPRGSLVGRVQAAYFKQVPVKVTMEEARQLDELAVE 343
            PG E +Q  GQ       A  L   ++RR   V  P EGPWAG+ GWE R MS EVA ML +M+     +  +  +LA RA+RA  R++M+LVTT EA +++ AR    A   E++EK+AL       ++      V A G     + GG +           + LP  E LVEER VSK +MA VM+REA++R             GGG                   ALP+GS VGRVQAAY K   V++T+EE +  D L  E
Sbjct:   90 PGLEGEQGNGQEGNNASVAGML---QSRRPSAVPEPSEGPWAGLDGWESRRMSREVASMLKRMDAEARTKGEKPGSLATRAQRALNRQQMVLVTTAEAGVIELAR----ARVAEEREKAAL-------RSPLLQSTVAAQGE---REGGGAA----------RLALPAPETLVEEREVSKRMMAKVMSREARAR-------------GGGRERPG-------------PALPKGSWVGRVQAAYAKCEKVRLTVEETKDWDALVEE 302
The following BLAST results are available for this feature:
BLAST of NO24G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20448.13.000e-1937.59hypothetical protein Naga_101516g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00020NO24G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00020.1NO24G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00020.1.cds1NO24G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00020.1 ID=NO24G00020.1|Name=NO24G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp
TCCGGAAGGGACACGATGCTCTGTAGTACTTTCTTGTCTGTCTTGTGTGT
TGTGATGGCGTTCGAAAAGGTGAGCCACACCCCGGAGCTCCGTGTTGCGG
GATCAAAATGCTTTGAGACCGCATAGCATTCAAATCATTGGGACGGTGGG
GGGAAGCGGGGGCATAAAATAGACAAAGGGTTTGACTCAAGGTGTGTTTT
GTTGGGAACGTACCATCTTTTTCGGTTTCTTCAAAGTTTTGAGTCCCATT
CATATTCTTCTTATTTGATCCTGTTCTCTCGCTATCTTCCCTCCTCTATC
CGGACACACCCGGTACCGAAGTTATGCTGATCTCTATCTTCTCTGCTTGA
TATAGTGCTCATCCTTGTCGCTTACCCCACACACAGCGAGCAAGGCATGC
AGCAGACAAGTCGTAAGCTCTCGAGCCCGCATCATCAGCCATCCGATTCC
CCTCCTCTTTTTTGATGCCCACCACTATCCCACGCTCATCATCAACTGGC
TTGCAAATTCATGACTATTGAGGAGAGCATGGTTGAGGAGAGCATTGTTA
AAAGCATCGTGTCGATCGAAATATGTAAAGACGGGGTCTTTACCTTAGAC
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAAGACATGC
GAGAGCGAATTCAAGAGCAAGCATTGAAGGAGCAGCGGCCAGGGGAGGAG
CAGCAGCAACAAGTTGGGCAAACCGAGGGGGAGAAGCAAACCGCAGAATT
TCTCCTCCTCCGGCGAGCACGTCGTTCCAAATGTGTTTCTGGACCTGTAG
AGGGGCCTTGGGCTGGCATGAAAGGGTGGGAGTGCCGTTCAATGAGCGTA
GAAGTGGCCAAGATGCTGCTCAAAATGGAGAAAGGCCAGCTGGGCGAGGA
CTTACGACAGTGCAATCTGGCGGCGCGGGCCCGGAGGGCGGCGGTGCGGG
AGGAGATGATTCTAGTGACGACAGAGGAGGCAGAGATGGTGGACCAAGCC
CGGGTGCTAGTGCTGGCCGAGGAGACTGAGAAGCAGGAAAAGAGCGCCCT
GCCGCTGTCGCCGACGAAGATCAAGACGAAGACGCAGAATATAGCAGTAA
CCGCAACGGGCTCCCCGGTAGCCATGGATGTGGGAGGTCTGTCGGGCAGC
AGCAGCTGTAGCAACAAGCTCCCGCCTATCCCCTTGCCCCCAACTGAGGC
CCTGGTGGAGGAGCGACCAGTGAGCAAGGCCTTGATGGCATGCGTAATGG
CCCGGGAAGCCAAGTCCCGCTTCGCCGCCGCCGCCTCCGCAGCAGCAGCA
GCCGCGCCTGGTGGAGGAAATGCAGCAACAGCAAAGGACGCAGCATCAGC
AGTAGTAGCAGTAGTAGCACCATCTGCATTACCGAGGGGGTCGCTTGTGG
GGCGGGTGCAGGCGGCTTACTTCAAGCAGGTGCCCGTGAAGGTGACGATG
GAAGAGGCAAGGCAGTTGGATGAGCTCGCCGTGGAAGAGGCGGAGATGGT
GGAGAAGGAGAGGCTGAAAAAGGATAGGGAGCAGCGGCAGCAGCCGCTCC
AGCAGCGGCTGCAGCAGGAAAAGGAGTTGGCAGCGCTGGCGGCGGCAATG
AAGGAGAAGGAGAAGGAGAAGGCCACGGTGTCACTGCGTGGGGAGGTTGG
GGTAAAGGAGGAGAGGATGATGCAGCTGCTGAACATAAATGACAAGGCGG
TCGACGAGAAGGAACAGGGCGAAGGAGGGAGGGAAGAACAAGTGCGGGCG
GGGAGAGGGGAGGAGATTAGTCGAAAGCGAACAGCCTGTGCTGCCTCTGG
CCAGGCCTCCTTTGAACAGGAAAGCGGACGCACCAGCGACCTTACCGCGA
CAGCAACAAACCCCTCTTCCTTCCCCTCATCCCCCAAGACCACCCTCGCA
GAGGACGGAGGCGAGATCGTGCGTGTCTCGCCCGAGCTGTGCCGTGCCCT
AATGACGCTCTGCCCCAACGCGGCCCGGGACTCGCTCACCGCCAAGGTCC
AGTCGGCAGTCATGTCGCAGAAGGATAGCTTGCACCTCCCTCCCCCACTC
CCTCCCTCGTCTTCCCCGGGCTTGAGGCCGGCGGAGCGCGTGCTGCTGGC
CCAGGCGCAGGCCATGGTGGAAGAGGGCTTGTTGGAGCCCGGCATGAAAG
CCGAGAGGAAGAAGAAGGTGAAGCTGCTGGCGACTGGCCAGGCCATAAAG
GAGAATGGGCTGGAGGGGAAAAGAGGGAGTGAAGGAGATGGAGGAGAAGA
AAGTAAAGGAGAAGGAGGGACAGGGTTGTTTTCTGTGTTGCTTACGCGGG
AGGGGATCGGGGCGGTGCAGGCATGGGAGGCCAAGGCAGGGGAGAAAGTG
ACGAGCTCCTCCCTTTCCTCGCGACTTATGGCCTTGTTCACGCGACAGAT
TACTGTCTTCCGTACGGACGACGCGCAGGAGGCAAGAAAGGTGGAGGAGG
CCGAGAGGGAGGGGGAGGGTAAGCGCCAGAGGCGGGAGGCAGCCCTGCGG
ATTCAGCAGAAGCAGACGGGAATGAAGGAGTGAGAGAAGGAGGAAGGGGA
AAGGGGGGAAAGAAGGAGGGACAGGGCAACAAGGCAATTGGTGGGGTTGG
TGGTATAGCTCTGTCAATGGATGAGAATTGATGATTGGGAGACGTTGAGA
GGGGA
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protein sequence of NO24G00020.1

>NO24G00020.1-protein ID=NO24G00020.1-protein|Name=NO24G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MTIEESMVEESIVKSIVSIEICKDGVFTLDKQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQDMRERIQEQALKEQRPGEEQQQQVGQTEGEKQTAEFLLL
RRARRSKCVSGPVEGPWAGMKGWECRSMSVEVAKMLLKMEKGQLGEDLRQ
CNLAARARRAAVREEMILVTTEEAEMVDQARVLVLAEETEKQEKSALPLS
PTKIKTKTQNIAVTATGSPVAMDVGGLSGSSSCSNKLPPIPLPPTEALVE
ERPVSKALMACVMAREAKSRFAAAASAAAAAAPGGGNAATAKDAASAVVA
VVAPSALPRGSLVGRVQAAYFKQVPVKVTMEEARQLDELAVEEAEMVEKE
RLKKDREQRQQPLQQRLQQEKELAALAAAMKEKEKEKATVSLRGEVGVKE
ERMMQLLNINDKAVDEKEQGEGGREEQVRAGRGEEISRKRTACAASGQAS
FEQESGRTSDLTATATNPSSFPSSPKTTLAEDGGEIVRVSPELCRALMTL
CPNAARDSLTAKVQSAVMSQKDSLHLPPPLPPSSSPGLRPAERVLLAQAQ
AMVEEGLLEPGMKAERKKKVKLLATGQAIKENGLEGKRGSEGDGGEESKG
EGGTGLFSVLLTREGIGAVQAWEAKAGEKVTSSSLSSRLMALFTRQITVF
RTDDAQEARKVEEAEREGEGKRQRREAALRIQQKQTGMKE*
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mRNA from alignment at chr24:4044..6748+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00020.1 ID=NO24G00020.1|Name=NO24G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp|location=Sequence derived from alignment at chr24:4044..6748+ (Nannochloropsis oceanica)
TCCGGAAGGGACACGATGCTCTGTAGTACTTTCTTGTCTGTCTTGTGTGT
TGTGATGGCGTTCGAAAAGGTGAGCCACACCCCGGAGCTCCGTGTTGCGG
GATCAAAATGCTTTGAGACCGCATAGCATTCAAATCATTGGGACGGTGGG
GGGAAGCGGGGGCATAAAATAGACAAAGGGTTTGACTCAAGGTGTGTTTT
GTTGGGAACGTACCATCTTTTTCGGTTTCTTCAAAGTTTTGAGTCCCATT
CATATTCTTCTTATTTGATCCTGTTCTCTCGCTATCTTCCCTCCTCTATC
CGGACACACCCGGTACCGAAGTTATGCTGATCTCTATCTTCTCTGCTTGA
TATAGTGCTCATCCTTGTCGCTTACCCCACACACAGCGAGCAAGGCATGC
AGCAGACAAGTCGTAAGCTCTCGAGCCCGCATCATCAGCCATCCGATTCC
CCTCCTCTTTTTTGATGCCCACCACTATCCCACGCTCATCATCAACTGGC
TTGCAAATTCATGACTATTGAGGAGAGCATGGTTGAGGAGAGCATTGTTA
AAAGCATCGTGTCGATCGAAATATGTAAAGACGGGGTCTTTACCTTAGAC
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAAGACATGC
GAGAGCGAATTCAAGAGCAAGCATTGAAGGAGCAGCGGCCAGGGGAGGAG
CAGCAGCAACAAGTTGGGCAAACCGAGGGGGAGAAGCAAACCGCAGAATT
TCTCCTCCTCCGGCGAGCACGTCGTTCCAAATGTGTTTCTGGACCTGTAG
AGGGGCCTTGGGCTGGCATGAAAGGGTGGGAGTGCCGTTCAATGAGCGTA
GAAGTGGCCAAGATGCTGCTCAAAATGGAGAAAGGCCAGCTGGGCGAGGA
CTTACGACAGTGCAATCTGGCGGCGCGGGCCCGGAGGGCGGCGGTGCGGG
AGGAGATGATTCTAGTGACGACAGAGGAGGCAGAGATGGTGGACCAAGCC
CGGGTGCTAGTGCTGGCCGAGGAGACTGAGAAGCAGGAAAAGAGCGCCCT
GCCGCTGTCGCCGACGAAGATCAAGACGAAGACGCAGAATATAGCAGTAA
CCGCAACGGGCTCCCCGGTAGCCATGGATGTGGGAGGTCTGTCGGGCAGC
AGCAGCTGTAGCAACAAGCTCCCGCCTATCCCCTTGCCCCCAACTGAGGC
CCTGGTGGAGGAGCGACCAGTGAGCAAGGCCTTGATGGCATGCGTAATGG
CCCGGGAAGCCAAGTCCCGCTTCGCCGCCGCCGCCTCCGCAGCAGCAGCA
GCCGCGCCTGGTGGAGGAAATGCAGCAACAGCAAAGGACGCAGCATCAGC
AGTAGTAGCAGTAGTAGCACCATCTGCATTACCGAGGGGGTCGCTTGTGG
GGCGGGTGCAGGCGGCTTACTTCAAGCAGGTGCCCGTGAAGGTGACGATG
GAAGAGGCAAGGCAGTTGGATGAGCTCGCCGTGGAAGAGGCGGAGATGGT
GGAGAAGGAGAGGCTGAAAAAGGATAGGGAGCAGCGGCAGCAGCCGCTCC
AGCAGCGGCTGCAGCAGGAAAAGGAGTTGGCAGCGCTGGCGGCGGCAATG
AAGGAGAAGGAGAAGGAGAAGGCCACGGTGTCACTGCGTGGGGAGGTTGG
GGTAAAGGAGGAGAGGATGATGCAGCTGCTGAACATAAATGACAAGGCGG
TCGACGAGAAGGAACAGGGCGAAGGAGGGAGGGAAGAACAAGTGCGGGCG
GGGAGAGGGGAGGAGATTAGTCGAAAGCGAACAGCCTGTGCTGCCTCTGG
CCAGGCCTCCTTTGAACAGGAAAGCGGACGCACCAGCGACCTTACCGCGA
CAGCAACAAACCCCTCTTCCTTCCCCTCATCCCCCAAGACCACCCTCGCA
GAGGACGGAGGCGAGATCGTGCGTGTCTCGCCCGAGCTGTGCCGTGCCCT
AATGACGCTCTGCCCCAACGCGGCCCGGGACTCGCTCACCGCCAAGGTCC
AGTCGGCAGTCATGTCGCAGAAGGATAGCTTGCACCTCCCTCCCCCACTC
CCTCCCTCGTCTTCCCCGGGCTTGAGGCCGGCGGAGCGCGTGCTGCTGGC
CCAGGCGCAGGCCATGGTGGAAGAGGGCTTGTTGGAGCCCGGCATGAAAG
CCGAGAGGAAGAAGAAGGTGAAGCTGCTGGCGACTGGCCAGGCCATAAAG
GAGAATGGGCTGGAGGGGAAAAGAGGGAGTGAAGGAGATGGAGGAGAAGA
AAGTAAAGGAGAAGGAGGGACAGGGTTGTTTTCTGTGTTGCTTACGCGGG
AGGGGATCGGGGCGGTGCAGGCATGGGAGGCCAAGGCAGGGGAGAAAGTG
ACGAGCTCCTCCCTTTCCTCGCGACTTATGGCCTTGTTCACGCGACAGAT
TACTGTCTTCCGTACGGACGACGCGCAGGAGGCAAGAAAGGTGGAGGAGG
CCGAGAGGGAGGGGGAGGGTAAGCGCCAGAGGCGGGAGGCAGCCCTGCGG
ATTCAGCAGAAGCAGACGGGAATGAAGGAGTGAGAGAAGGAGGAAGGGGA
AAGGGGGGAAAGAAGGAGGGACAGGGCAACAAGGCAATTGGTGGGGTTGG
TGGTATAGCTCTGTCAATGGATGAGAATTGATGATTGGGAGACGTTGAGA
GGGGA
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Coding sequence (CDS) from alignment at chr24:4044..6748+

>NO24G00020.1 ID=NO24G00020.1|Name=NO24G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=2073bp|location=Sequence derived from alignment at chr24:4044..6748+ (Nannochloropsis oceanica)
ATGACTATTGAGGAGAGCATGGTTGAGGAGAGCATTGTTAAAAGCATCGT
GTCGATCGAAATATGTAAAGACGGGGTCTTTACCTTAGACAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAGCAACAGCAAGACATGCGAGAGCGAAT
TCAAGAGCAAGCATTGAAGGAGCAGCGGCCAGGGGAGGAGCAGCAGCAAC
AAGTTGGGCAAACCGAGGGGGAGAAGCAAACCGCAGAATTTCTCCTCCTC
CGGCGAGCACGTCGTTCCAAATGTGTTTCTGGACCTGTAGAGGGGCCTTG
GGCTGGCATGAAAGGGTGGGAGTGCCGTTCAATGAGCGTAGAAGTGGCCA
AGATGCTGCTCAAAATGGAGAAAGGCCAGCTGGGCGAGGACTTACGACAG
TGCAATCTGGCGGCGCGGGCCCGGAGGGCGGCGGTGCGGGAGGAGATGAT
TCTAGTGACGACAGAGGAGGCAGAGATGGTGGACCAAGCCCGGGTGCTAG
TGCTGGCCGAGGAGACTGAGAAGCAGGAAAAGAGCGCCCTGCCGCTGTCG
CCGACGAAGATCAAGACGAAGACGCAGAATATAGCAGTAACCGCAACGGG
CTCCCCGGTAGCCATGGATGTGGGAGGTCTGTCGGGCAGCAGCAGCTGTA
GCAACAAGCTCCCGCCTATCCCCTTGCCCCCAACTGAGGCCCTGGTGGAG
GAGCGACCAGTGAGCAAGGCCTTGATGGCATGCGTAATGGCCCGGGAAGC
CAAGTCCCGCTTCGCCGCCGCCGCCTCCGCAGCAGCAGCAGCCGCGCCTG
GTGGAGGAAATGCAGCAACAGCAAAGGACGCAGCATCAGCAGTAGTAGCA
GTAGTAGCACCATCTGCATTACCGAGGGGGTCGCTTGTGGGGCGGGTGCA
GGCGGCTTACTTCAAGCAGGTGCCCGTGAAGGTGACGATGGAAGAGGCAA
GGCAGTTGGATGAGCTCGCCGTGGAAGAGGCGGAGATGGTGGAGAAGGAG
AGGCTGAAAAAGGATAGGGAGCAGCGGCAGCAGCCGCTCCAGCAGCGGCT
GCAGCAGGAAAAGGAGTTGGCAGCGCTGGCGGCGGCAATGAAGGAGAAGG
AGAAGGAGAAGGCCACGGTGTCACTGCGTGGGGAGGTTGGGGTAAAGGAG
GAGAGGATGATGCAGCTGCTGAACATAAATGACAAGGCGGTCGACGAGAA
GGAACAGGGCGAAGGAGGGAGGGAAGAACAAGTGCGGGCGGGGAGAGGGG
AGGAGATTAGTCGAAAGCGAACAGCCTGTGCTGCCTCTGGCCAGGCCTCC
TTTGAACAGGAAAGCGGACGCACCAGCGACCTTACCGCGACAGCAACAAA
CCCCTCTTCCTTCCCCTCATCCCCCAAGACCACCCTCGCAGAGGACGGAG
GCGAGATCGTGCGTGTCTCGCCCGAGCTGTGCCGTGCCCTAATGACGCTC
TGCCCCAACGCGGCCCGGGACTCGCTCACCGCCAAGGTCCAGTCGGCAGT
CATGTCGCAGAAGGATAGCTTGCACCTCCCTCCCCCACTCCCTCCCTCGT
CTTCCCCGGGCTTGAGGCCGGCGGAGCGCGTGCTGCTGGCCCAGGCGCAG
GCCATGGTGGAAGAGGGCTTGTTGGAGCCCGGCATGAAAGCCGAGAGGAA
GAAGAAGGTGAAGCTGCTGGCGACTGGCCAGGCCATAAAGGAGAATGGGC
TGGAGGGGAAAAGAGGGAGTGAAGGAGATGGAGGAGAAGAAAGTAAAGGA
GAAGGAGGGACAGGGTTGTTTTCTGTGTTGCTTACGCGGGAGGGGATCGG
GGCGGTGCAGGCATGGGAGGCCAAGGCAGGGGAGAAAGTGACGAGCTCCT
CCCTTTCCTCGCGACTTATGGCCTTGTTCACGCGACAGATTACTGTCTTC
CGTACGGACGACGCGCAGGAGGCAAGAAAGGTGGAGGAGGCCGAGAGGGA
GGGGGAGGGTAAGCGCCAGAGGCGGGAGGCAGCCCTGCGGATTCAGCAGA
AGCAGACGGGAATGAAGGAGTGA
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Synonyms
Publications