NO23G01910.2, NO23G01910.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01910.2
Unique NameNO23G01910.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2051
Alignment locationchr23:689971..693570 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:689971..693570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01910.2 vs.
Match: EWM27850.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 599.4 bits (1544), Expect = 8.300e-168
Identity = 322/412 (78.16%), Postives = 349/412 (84.71%), Query Frame = 0 
Query:    1 MSSTPAARRLSLLP-LICCITTTATTVLAAPSSSSTSTTAPMIL--------LRHSTTAIGSAFIRPSTAPWLAGTRRRFAAG------------------AGHQVTMKLKAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALAGIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFEDDDVIHVSGSVDPERDMEIINLELALSDLSQVEKRLQRALKDKTVTQPERDGLQKVYDALADGKPARDILPTLSEDELADVGRLGLLTGMKVIYAANVGDSELATGNKYVEKVREVAERDGAGVVIVSAQVESELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQ 386
            MSS P  RR+SLLP L CC+T +A T+ A P+   T  T   I          R+      SAFIRP   PW  G +R+ AA                   +GHQ++MKL+AGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALA IAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFE+DD++HVSGSVDPERDME+INLELALSDL+QVEKRLQRALKDK+VTQ ERDGLQ+VYDALA+GKPAR+ILP LSEDELADVGRLGLLTGMKVIYAANVGD+ELATGNKYV+KVREVA ++GAGVV+VSAQVE+ELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQ
Sbjct:    1 MSSGPVNRRVSLLPFLYCCVTVSAATLFAFPAPLVTRETKKQISDCTRRMFNFRYGMVRSNSAFIRPFVKPWSGGAQRQLAAAIQSSAIRPLHPPCPLSQASGHQISMKLRAGIVGLPNVGKSTLFNALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALANIAKSESVLPAVLEFVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFENDDIVHVSGSVDPERDMEVINLELALSDLAQVEKRLQRALKDKSVTQAERDGLQRVYDALAEGKPAREILPFLSEDELADVGRLGLLTGMKVIYAANVGDAELATGNKYVDKVREVAAKEGAGVVLVSAQVEAELVELPLEDRKEFLESLGVQEEACGLRALVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQ 412
The following BLAST results are available for this feature:
BLAST of NO23G01910.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27850.18.300e-16878.16gtp-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01910NO23G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01910.2NO23G01910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01910.2.cds1NO23G01910.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds2NO23G01910.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds3NO23G01910.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds4NO23G01910.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds5NO23G01910.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds6NO23G01910.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds7NO23G01910.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01910.2.cds8NO23G01910.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01910.2 ID=NO23G01910.2|Name=NO23G01910.2|organism=Nannochloropsis oceanica|type=mRNA|length=2051bp
GTACAATCTCTGTTAGGGTTAACCACGAGCCAAACGAATAAGCACATGAT
ACCGCGTGCTCGATAATTAGTTTCACGGTGTAGATTCAGTGCAAAGGCCG
ATTTTTTGTGAGATAAAGCAGCGAGACTCCACTCCATATCCTGGCTCAGC
ACGTCCGTACGTTGCCATCGCACAAGCAACAAGCCCCTCCTTCACCCACC
ACATCTTCACCTGAACACTACCCAAACAGGCATTAAGCAGAAAATACAAG
GGGAAGAAGAGCGCAATTGCTTGCCTTTTTCTTTCGTACCGGCCTGTCCA
GTCTCCATATGTCTTCGACGCCCGCCGCTCGTCGACTCAGCCTCCTGCCC
CTCATCTGCTGCATAACCACGACGGCCACGACCGTACTTGCCGCGCCTTC
CTCATCCTCTACCTCCACCACCGCCCCCATGATCCTCCTCCGTCATAGCA
CGACTGCCATCGGCAGCGCTTTTATCAGACCCTCTACCGCGCCTTGGCTG
GCGGGAACCCGGCGTCGTTTCGCTGCAGGTGCTGGCCACCAAGTGACCAT
GAAGCTAAAAGCCGGCATCGTAGGCCTACCGAACGTGGGCAAGTCCACCC
TCTTCAACGCCCTGACGGGCGGCGCCACCGCGCAGGCAGCGAACTTCCCT
TTTTGCACCATCGAGCCGAACGTGGGCATCGCCGAGGTGCCCGATCCCCG
CCTCCTGGCCCTGGCCGGCATCGCCAAGAGCGAGTCCGTCTTGCCGGCCG
TGCTGGAGTTCGTGGACATCGCGGGGCTGGTAAAGGGAGCCTCTCAAGGC
GAGGGGCTGGGCAACAAATTCCTGGCGAATATTCGCGAATGCGATGCCAT
CGTCCAGGTCATCCGCTGCTTCGAGGATGACGATGTCATTCACGTCTCGG
GCTCAGTGGACCCGGAGCGAGACATGGAGATAATTAACCTGGAGCTCGCC
CTCTCCGACTTGTCGCAAGTAGAAAAGCGGCTACAACGCGCTCTCAAAGA
CAAAACAGTCACCCAACCCGAGCGCGACGGCCTCCAGAAGGTGTACGATG
CCCTGGCAGACGGCAAGCCGGCCAGGGACATCCTTCCGACGCTCTCGGAG
GACGAGCTAGCGGACGTGGGGCGCCTCGGTCTGCTCACAGGCATGAAAGT
CATCTACGCCGCCAACGTGGGTGATAGCGAGCTGGCCACCGGCAATAAAT
ATGTGGAAAAAGTGCGCGAGGTCGCTGAGAGAGACGGAGCAGGTGTCGTC
ATCGTCTCTGCGCAGGTGGAGTCGGAGCTGGTCGAGCTGCCCTTGGAGGA
TCGGAAGGAGTTTTTAGAGTCTCTGGGGGTGCAGGAGGAGGCATGCGGCC
TCCGGGCGCTGGTGAAGGAGACCTACTCTCTGCTGGGGCTACAGACATAC
TTCACGTGCGGGCCTAAGGAGACCCGGGCGTGGACGATCAAGAAGGGGAG
CACGGCACCGCAAGGTGGGGAGGAGGGGTGGTGGGGATGAAAGAAGGAAA
GGATGATGTGTCGGTCGCGAAGGAGGACAAGGATTAAGCGGGAGGCTCAT
CAATCCAGTATTCCTCACTCGTACTCGTACCCTCCCTCTTTCCCTCCTTT
CCCCAAAATAGCCGCGGGCGTCATCCACTCCGACTTTGAAAAAGGCTTTA
TCCGTGCCGAGACGATGTCCTTCGAGGATCTGGTGGCATTGGGAAGCGAG
AAAGCAGTCAAGGACGCGGGCAAGCTCCGATCCGAGGGGAAGGATTATGT
GTGCAAGGAAGGAGACGTCATGCTTTTCCGCTTCAACGTTTGAGAAGGGG
CAGGGAGGGAGGGATGGAAGGAGAGAGGGAGGGAGGGAGGGATACAAAAC
AAAAGAACCAAAAATGACGACTGACTTTGTTATTCGATGGTTCTAATAGT
CTCGTCGGGAAGGGAAACAGGTGGTAGCCTCGCTGTTCGTTATGCGCGTG
GTGAGAATGGTGTAGAGGCTTACCAGGAGGGACAAAAGGATCAATAAGTG
AAAGAAGGTAGATGGAAACTAGCCAAGGGACCGCCACTTCCTCTCACAAA
A
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protein sequence of NO23G01910.2

>NO23G01910.2-protein ID=NO23G01910.2-protein|Name=NO23G01910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MSSTPAARRLSLLPLICCITTTATTVLAAPSSSSTSTTAPMILLRHSTTA
IGSAFIRPSTAPWLAGTRRRFAAGAGHQVTMKLKAGIVGLPNVGKSTLFN
ALTGGATAQAANFPFCTIEPNVGIAEVPDPRLLALAGIAKSESVLPAVLE
FVDIAGLVKGASQGEGLGNKFLANIRECDAIVQVIRCFEDDDVIHVSGSV
DPERDMEIINLELALSDLSQVEKRLQRALKDKTVTQPERDGLQKVYDALA
DGKPARDILPTLSEDELADVGRLGLLTGMKVIYAANVGDSELATGNKYVE
KVREVAERDGAGVVIVSAQVESELVELPLEDRKEFLESLGVQEEACGLRA
LVKETYSLLGLQTYFTCGPKETRAWTIKKGSTAPQGGEEGWWG*
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mRNA from alignment at chr23:689971..693570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01910.2 ID=NO23G01910.2|Name=NO23G01910.2|organism=Nannochloropsis oceanica|type=mRNA|length=3600bp|location=Sequence derived from alignment at chr23:689971..693570+ (Nannochloropsis oceanica)
GTACAATCTCTGTTAGGGTTAACCACGAGCCAAACGAATAAGCACATGAT
ACCGCGTGCTCGATAATTAGTTTCACGGTGTAGATTCAGTGCAAAGGCCG
ATTTTTTGTGAGATAAAGCAGCGAGACTCCACTCCATATCCTGGCTCAGC
ACGTCCGTACGTTGCCATCGCACAAGCAACAAGCCCCTCCTTCACCCACC
ACATCTTCACCTGAACACTACCCAAACAGGCATTAAGCAGAAAATACAAG
GGGAAGAAGAGCGCAATTGCTTGCCTTTTTCTTTCGTACCGGCCTGTCCA
GTCTCCATATGTCTTCGACGCCCGCCGCTCGTCGACTCAGCCTCCTGCCC
CTCATCTGCTGCATAACCACGACGGCCACGACCGTACTTGCCGCGCCTTC
CTCATCCTCTACCTGTAAGTGGCATTAGACAAAGAAATGACAAAGTGATG
GCAGGGCATAACTTGACATCCTCTCTAGGCCCCTAGAGACCACTACTTAC
ATCCCTTACTGTCTCCCTCCCTCCTCCCCCCCCCCCCCACCCCCCTTACC
CTCCCGTAGCCACCACCGCCCCCATGATCCTCCTCCGTCATAGCACGACT
GCCATCGGCAGCGCTTTTATCAGACCCTCTACCGCGCCTTGGCTGGCGGG
AACCCGGCGTCGTTTCGCTGCAGGTAGGCGCAATAAGGGAGGGAGAGATG
GGTGGGGAGGAAATAGATAGTAAGAGACCACGAAGGCAAAATGAAATGAG
GCAGGGGAGAAATAGAGGATAGGAAGAATGCTTATATGCATATAAGAACG
GCCCCTTGTACTACTGCCACTCCACTCAATCAATGGAATGGGAGCGTTAA
AGGAAACCAATCAAAGAGCCCAGAGGAATCGATATCTCATCGACTGGACG
TGAAGGAGGGCTGCACACGCACTACACCCTGTCGGAATGGTAAAATGCCT
TTCCTTGCGTCTGTAGTCGTGCTGCGAGGAGGGGGTAAAACAAAGATAGC
TCCCTCCTGGCGCCGCTCCCTGTGGTCCTAACATCATATTGATCATTTTC
CCGATTTAGCTCTTTTTGTGGTTGTGTGCATCTTCGGAGCTAAAGCTCAC
CCTCCTCCTCCTCGCCCTCCCTCCCACTTTTTTCCCCTTACAAAGGTGCT
GGCCACCAAGTGACCATGAAGCTAAAAGCCGGCATCGTAGGCCTACCGAA
CGTGGGCAAGTCCACCCTCTTCAACGCCCTGACGGGCGGCGCCACCGCGC
AGGCAGCGAAGTACGTCCATTCACGCTCCAAGGGAGGGAAGGAGAAAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAGTGGGGAGTTTGATGACTC
ATGCATTTGCTTGCACTCCTCTGTGACTTGACAGCTTCCCTTTTTGCACC
ATCGAGCCGAACGTGGGCATCGCCGAGGTAAGAGGATCTGAAGAGGAAGG
AAACAAAGGTGATAAAATGTTGTAAAGAAGAGAGGTGGGTACCTTAGTTT
TATCTCTCTACTGATCTCGCCTCATCTCCCTCCCCTTCTCTCTCCCTCCC
TCTTCCCAAGGTGCCCGATCCCCGCCTCCTGGCCCTGGCCGGCATCGCCA
AGAGCGAGTCCGTCTTGCCGGCCGTGCTGGAGTTCGTGGACATCGCGGGG
CTGGTAAAGGGAGCCTCTCAAGGCGAGGGGCTGGGCAACAAATTCCTGGC
GAATATTCGCGAATGCGATGCCATCGTCCAGGTAGCTTTCATTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCGTTTTTCCTCTCCTTCCCCATCGAT
GGTCTTTGATATCCTTCTTCGGTGTTATAGCAAGCATGCACATTTTTTTC
GCTCTCTGCTCTCTGCTCCACATCACCGCGGCGACTTGTGGGCATTCATC
CTCCCTCCCTGGTGTCCCTCTCCTCGCTCCCCCCGCACTCAGGTCATCCG
CTGCTTCGAGGATGACGATGTCATTCACGTCTCGGGCTCAGTGGACCCGG
AGCGAGACATGGAGATAATTAACCTGGAGCTCGCCCTCTCCGACTTGTCG
CAAGTAGAAAAGGTAACCACGCTCTCTCTCACCTCTCGTCCCCCCCTTCC
TCCTTTCCTCCCTCCCTTCCTCCCGATTTCTCTCTCGACGCACTCGGGGC
ACGACATGAATTTAGCTTGCCTCCCGCGGATGGTTGCAAGTAGAACGCAC
AGAAGTCTTGTCCTCTCTCTCCCCGTCCCCCCCACCCTACCAGCAGTGAT
AGCCTGCCCTCACGGGCAAGGCCGTCGCAAAATCCGAACGCCGCGATCCC
CGAAACTAATAATCCCCCCTACCCCCTTCCCTCCCTCCCTTTTCAGCGGC
TACAACGCGCTCTCAAAGACAAAACAGTCACCCAACCCGAGCGCGACGGC
CTCCAGAAGGTGTACGATGCCCTGGCAGACGGCAAGCCGGCCAGGGACAT
CCTTCCGACGCTCTCGGAGGACGAGCTAGCGGACGTGGGGCGCCTCGGTC
TGCTCACAGGCAAGGAAGTGGGGAGGGATGGAGGGAAGGAGGGAAGGAGA
AAAGGAGGGAAAGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGA
GGGACGGGTTGGGCGTCGCACAACCGACCACGCGGCATCGTAAGCCGCCA
CGTCCTCACCCTCCCTCCCCTTGCCCTTGCCCTTCCCAGGCATGAAAGTC
ATCTACGCCGCCAACGTGGGTGATAGCGAGCTGGCCACCGGCAATAAATA
TGTGGAAAAAGTGCGCGAGGTCGCTGAGAGAGACGGAGCAGGTGTCGTCA
TCGTCTCTGCGCAGGTGGAGTCGGAGCTGGTCGAGCTGCCCTTGGAGGAT
CGGAAGGAGTTTTTAGAGTCTCTGGGGGTGCAGGAGGAGGCATGCGGCCT
CCGGGCGCTGGTGAAGGAGACCTACTCTCTGCTGGGGCTACAGACATACT
TCACGTGCGGGCCTAAGGAGACCCGGGCGTGGACGATCAAGAAGGGGAGC
ACGGCACCGCAAGGTGGGGAGGAGGGGTGGTGGGGATGAAAGAAGGAAAG
GATGATGTGTCGGTCGCGAAGGAGGACAAGGATTAAGCGGGAGGCTCATC
AATCCAGTATTCCTCACTCGTACTCGTACCCTCCCTCTTTCCCTCCTTTC
CCCAAAATAGCCGCGGGCGTCATCCACTCCGACTTTGAAAAAGGCTTTAT
CCGTGCCGAGACGATGTCCTTCGAGGATCTGGTGGCATTGGGAAGCGAGA
AAGCAGTCAAGGACGCGGGCAAGCTCCGATCCGAGGGGAAGGATTATGTG
TGCAAGGAAGGAGACGTCATGCTTTTCCGCTTCAACGTTTGAGAAGGGGC
AGGGAGGGAGGGATGGAAGGAGAGAGGGAGGGAGGGAGGGATACAAAACA
AAAGAACCAAAAATGACGACTGACTTTGTTATTCGATGGTTCTAATAGTC
TCGTCGGGAAGGGAAACAGGTGGTAGCCTCGCTGTTCGTTATGCGCGTGG
TGAGAATGGTGTAGAGGCTTACCAGGAGGGACAAAAGGATCAATAAGTGA
AAGAAGGTAGATGGAAACTAGCCAAGGGACCGCCACTTCCTCTCACAAAA
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Coding sequence (CDS) from alignment at chr23:689971..693570+

>NO23G01910.2 ID=NO23G01910.2|Name=NO23G01910.2|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr23:689971..693570+ (Nannochloropsis oceanica)
ATGTCTTCGACGCCCGCCGCTCGTCGACTCAGCCTCCTGCCCCTCATCTG
CTGCATAACCACGACGGCCACGACCGTACTTGCCGCGCCTTCCTCATCCT
CTACCTCCACCACCGCCCCCATGATCCTCCTCCGTCATAGCACGACTGCC
ATCGGCAGCGCTTTTATCAGACCCTCTACCGCGCCTTGGCTGGCGGGAAC
CCGGCGTCGTTTCGCTGCAGGTGCTGGCCACCAAGTGACCATGAAGCTAA
AAGCCGGCATCGTAGGCCTACCGAACGTGGGCAAGTCCACCCTCTTCAAC
GCCCTGACGGGCGGCGCCACCGCGCAGGCAGCGAACTTCCCTTTTTGCAC
CATCGAGCCGAACGTGGGCATCGCCGAGGTGCCCGATCCCCGCCTCCTGG
CCCTGGCCGGCATCGCCAAGAGCGAGTCCGTCTTGCCGGCCGTGCTGGAG
TTCGTGGACATCGCGGGGCTGGTAAAGGGAGCCTCTCAAGGCGAGGGGCT
GGGCAACAAATTCCTGGCGAATATTCGCGAATGCGATGCCATCGTCCAGG
TCATCCGCTGCTTCGAGGATGACGATGTCATTCACGTCTCGGGCTCAGTG
GACCCGGAGCGAGACATGGAGATAATTAACCTGGAGCTCGCCCTCTCCGA
CTTGTCGCAAGTAGAAAAGCGGCTACAACGCGCTCTCAAAGACAAAACAG
TCACCCAACCCGAGCGCGACGGCCTCCAGAAGGTGTACGATGCCCTGGCA
GACGGCAAGCCGGCCAGGGACATCCTTCCGACGCTCTCGGAGGACGAGCT
AGCGGACGTGGGGCGCCTCGGTCTGCTCACAGGCATGAAAGTCATCTACG
CCGCCAACGTGGGTGATAGCGAGCTGGCCACCGGCAATAAATATGTGGAA
AAAGTGCGCGAGGTCGCTGAGAGAGACGGAGCAGGTGTCGTCATCGTCTC
TGCGCAGGTGGAGTCGGAGCTGGTCGAGCTGCCCTTGGAGGATCGGAAGG
AGTTTTTAGAGTCTCTGGGGGTGCAGGAGGAGGCATGCGGCCTCCGGGCG
CTGGTGAAGGAGACCTACTCTCTGCTGGGGCTACAGACATACTTCACGTG
CGGGCCTAAGGAGACCCGGGCGTGGACGATCAAGAAGGGGAGCACGGCAC
CGCAAGGTGGGGAGGAGGGGTGGTGGGGATGA
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Synonyms
Publications