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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:658071..662261 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01820.2 vs.
Match: GAX83094.1 (hypothetical protein CEUSTIGMA_g10520.t1 [Chlamydomonas eustigma]) HSP 1 Score: 77.8 bits (190), Expect = 7.600e-11 Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 249 FGRIPSYLLAIKQARLAAEALRRAAMKGRHSD-IPPGMRLLTDAERSEALAALDAQEREIQSMLLKIPLRVDTPSMARKKHALEARLTEVGTSRELFAKPRVLIK 353
FGR+P+YLL Q ++ + + M+ R + IPPGMRLL + ER E L L E++ L +PLR++TP R++ LE RL E+ ++FA+P+VL+K
Sbjct: 190 FGRVPTYLL---QRKIDLIDQQESEMRAREAALIPPGMRLLPEDERLETLTVLQKNRHEVERALQALPLRIETPGQIRRRDELERRLREIEEGLKVFARPKVLVK 291
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01820.2 ID=NO23G01820.2|Name=NO23G01820.2|organism=Nannochloropsis oceanica|type=mRNA|length=4105bp
TGCCTTTTCGCATCGGCCTACCTTTGTTACTTTTCCTTTCCCTTTTCGAC
AAACGGGACGGGCACATGTTTTAGCTAATTTCAATTTGTGTGGGTATTGT
GTTCAAGAAAATTAGTGGAGTATGAAATGTTCCCATGATTCTGTATCGCG
AATGGCTGGTTCTCATCCTCTCACTTGATGACCTCCATTAAGTGGGAATC
CTTCTCGACACTTGGTGATCCTTCCATGGGGCTGCATCAACGATAAAATG
GAGGAAAAATTGCAATGTCGGGTGAGCCCAGATAAACAATTCCTCATCCA
TCTAATTTATATTATTTGCTTCATTTTTCTCCCATCTACCACGTTCCCCA
ATCATCTCATCCGCGACCGCTTTACCGTCATTTACGCAACGAATCCGCCA
ACCGTACGGTCTGAACGGCCATGGGCACGTTGTGCACACGCACCATCGCC
GCCCCTCGCGAAATAGCCACCGCATTCACCACGCTCGTCATCACGTCCCT
CTCCTCTGCCCTCGGCTCGTCGCACAGTGTGCCCAAAAATTTCTTTCGAC
TGACCCCCACTAGCACCGGAAGCCCTACCATCCTTTCACACACACAGTCC
AATCCTCGCAGCAAGGCCATGTTCACCTCCAGGCCTTTGGCAAACCCAAT
GCCCGGGTCCACCAGCATCGACCATCTCCTCACTCCCTCCTCCTCCGCCC
TCCCCACCGCCCCCCACAGCTCCCCACATACCTCTTCCACAGCATCCTCA
TTGTATGTACTGTGCTGTCTCTGCATCATCGTCTGGGGAGTACCCCGCAT
GTGCATAATTATGTAGGGCACATCCAATGCCGCGACTGTTGCCAACATTT
TTGAATCAAACCCTCCCCCGGACACATCATTAACGATGTCCACCCCCGCC
TCCACCGCTGCTCGGGCCACCCCTGCTCTCCTTGTATCAATCGAAAGCAG
CGTGTCTTTGTCATGCGCGCGAATTCCCTGAATGATAGGCACCACTCGCC
GGAGCTCCTCCTCCTCTCCCACTTCATCGGCCCCAGGCCTCGTCGACTCA
CCCCCTATGTCAATGATCCCGGCCCCCTCCTCCCGCATCCGCACGGCCCT
CTCCACAGCTGCCTCCACGCTCTCTGCATCGATCCCTCCGTCACTAAAGC
TGTCAGGGGTAGCATTCAGAATGCCCATCACTACTGTGGAGGTCTTATTA
TGCGCCGGGTCGAGGGGCAGCAGCAGGCTTCCCTTCTCCCTCCCCCCCCC
CTCCGCCTTTTCAATGGCAACACCCTTACCAAGGGTGGTGTATCCTCTGA
GCGGCTCCGAGCACAAGCCCGTAGCATTTCTTTTACAGTGATCTGCTCTT
GTGAGGGATGACGGAGGGAGGGCGCCAGCTCCGCCAATGGACGCAACACA
AACTCTCGCTCATGCAATCGGACGTGCGGCACGAAAAGCGACCCTTCCTC
GGAGCCCTTTTTCTCGCCGTGCTTCTCGAAGGTGATAGGCTTAGACGGAT
CGTCATCTTCATGGTAGTAGAGAATGTCCAAGTCCAAGGTTCTGGGACCG
AAGCGCTGAGTGCCTTTTACCCGGCCAAGCATCTTCTCAATCTCTTGGAG
GCGAGAGAGGAGGGCCAGGGGAGGGAGAAGCGTCTGAATCCTACAGACAG
CATTGAGAAAGTCGGGTTGCTCCGTCACATACTGGGCTTTGGACTCAAAG
AGGCCCGAGGTGGCTTGGACGTGGCCCAGGGTGGGCTATGTTTGGAAGTG
GGGAGGTTTTTGAGGTTTCTAAGAAAGGGAAGGAAGGGTCAAGGGTCAAA
CCAACACCGAACAAATCCTTACCTCATTGAGTGCCTCCACGGCTCGCTGT
AGATTAAGCGCCCGATCCCCCAGATTGCTGCCAAGGGCGACATAGACGTG
GTAGGGCCGGCGGTGGGGTAGGCGATGTCGGGTAGCCCACGCCAAAGTAT
CCGCACGACCTGTCCGAAGACCCATCAAGGACGACGATAAGCGACCCAAA
AAATGTGTGGACATGCTGCTTGGGTTGGCAGCGAATCAGTCACAAAGTAA
GAAAAGAGAAAACGTTTGCTTCTGTATTTGGTGCCGCACATTTCTCCTAG
GGACCGTACATCTGTGCCAGCCCGTTGCAGCAGCACGACGACGAAAAAAG
TGCTGCGTTCATCTCCTAAATTCATTCGTGCCACGCCCACAACTCCGTCA
CAGACTTACCACCTTTTCCCCACACACGTCTGCGTGTCGTAGATGGTGTA
GCAACGCGATTAGATATTGGTTCATTCAGGCATTTAGACGAAAAGCAAGC
CTGACTTGGCCCATCAAATACTACATATGCCCTCGTTTTTCGTGGCCGGC
AGCAAGCAATTGCAGCACCGAGGCGTGAGAAGGTACATATGAAATTGCAG
ATAATTGACATAAGTACTTCCACTCATCTCCACCTACTATTTGCGTGGTG
AAATCAGACAAACTATGTCGTCCCCACCCGCTGGCACTATAAAGCGGGAC
TATGTGAGAGAAAACCGCAAAGCGATCCGAGAGCTGGAAGACGACGTGCG
GAGCCAACGTGCGTTTACGGACGAGATTATGCGAATGGATGAAGTCAAAA
CAAAATGGAAGATGAACAGGTTCCAGGACATCGAGAGCAAGATGACAGCG
ATCATGAATAAATCCGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACC
GGTATCTACCACCGCTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAA
CAGCAGCAGCAGCAGCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCT
CCTCCCTCAACCCCTTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCT
CGACCAAAGCACTAAGGTACGAGAAAAAATTAGGACACATCATGCCTCTG
CCCTCTTCCTCTCCTCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCC
CTCTCTCATCTGGAACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGT
GCCCTTGCTCCGTCCCGCGGTTTCCAAAAACCACATCATCAATAATCGAC
GAGCGGCTATAAAGCTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCT
TCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCC
CTGCTCCTCCAACAGCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTC
ACAAAGCCTTCGGGCGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCT
CGCCTTGCCGCCGAGGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTC
TGATATCCCTCCAGGGATGCGACTCCTGACTGATGCAGAACGAAGCGAAG
CCCTTGCTGCCTTGGATGCGCAAGAACGGGAAATACAATCGATGTTGCTC
AAGATCCCCTTGAGAGTGGACACACCAAGTATGGCTCGAAAGAAGCATGC
TTTAGAGGCACGCTTGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCA
AGCCTCGGGTGTTGATTAAAGACGGATGAAGATGGTGAGGGAAGAGTAAG
TAAGTGTGGATTTAGGATAGAGAGAAAGTGCCACGATGAAAGGGGACAGG
GAATACTGACAGGCTTATAACAATCGAGAGCATGAAGTGGCTTTGGAAAG
GTGGAGAGATCATATCTGAAAGGAATCAAATGTAATAGTTGTGGAATTGG
CCGATGCGGGAGGGATGAGGCGTTACTCTTGATAAATAATGACCTACCCA
GCTTTGATTACGCATTTAATCATCAGTCCAATTGTCATTGCTCCTTAAAG
GACCAAACGCTCTCGAAATGGGCATCTTACCACACCACCTTTATGTACTG
GGATACCAAAAGAACAAAAAAGTCAAATGGGCCACTCAAGAGCGCTACCC
GAGCAATCACTGCCTCACATGGCTGAGAAAGGCTCTTTATCAAAAGCGTG
TGCCGCTTCATTCCGAAACCTCGAGCACAAAGACACGAAAGTACCAATTA
CGATGTAGATGCTTGAGCACGTGACCTTCTCATAAGAGCGAAATCCCCAT
TTGCGGTAGGAAACTAGCTTATTCAAGGCTTGCATCTCGCGTCCACACAC
CGGCG back to topprotein sequence of NO23G01820.2 >NO23G01820.2-protein ID=NO23G01820.2-protein|Name=NO23G01820.2|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MSSPPAGTIKRDYVRENRKAIRELEDDVRSQRAFTDEIMRMDEVKTKWKM
NRFQDIESKMTAIMNKSGDRLQSPSSGSPVSTTATAAFTSPAAATTAAAA
AAASHSSIIHPAPPSTPFLQRGTLEQRILDQSTKVREKIRTHHASALFLS
SPTAAEAAKAASLSHLERKPAVPRARDFVPLLRPAVSKNHIINNRRAAIK
LSSSSSSSCSFPSSSSSSSSSSSSSSPSPCSSNSSSNTSTGGCARHKAFG
RIPSYLLAIKQARLAAEALRRAAMKGRHSDIPPGMRLLTDAERSEALAAL
DAQEREIQSMLLKIPLRVDTPSMARKKHALEARLTEVGTSRELFAKPRVL
IKDG* back to topmRNA from alignment at chr23:658071..662261- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01820.2 ID=NO23G01820.2|Name=NO23G01820.2|organism=Nannochloropsis oceanica|type=mRNA|length=4191bp|location=Sequence derived from alignment at chr23:658071..662261- (Nannochloropsis oceanica)
TGCCTTTTCGCATCGGCCTACCTTTGTTACTTTTCCTTTCCCTTTTCGAC
AAACGGGACGGGCACATGTTTTAGCTAATTTCAATTTGTGTGGGTATTGT
GTTCAAGAAAATTAGTGGAGTATGAAATGTTCCCATGATTCTGTATCGCG
AATGGCTGGTTCTCATCCTCTCACTTGATGACCTCCATTAAGTGGGAATC
CTTCTCGACACTTGGTGATCCTTCCATGGGGCTGCATCAACGATAAAATG
GAGGAAAAATTGCAATGTCGGGTGAGCCCAGATAAACAATTCCTCATCCA
TCTAATTTATATTATTTGCTTCATTTTTCTCCCATCTACCACGTTCCCCA
ATCATCTCATCCGCGACCGCTTTACCGTCATTTACGCAACGAATCCGCCA
ACCGTACGGTCTGAACGGCCATGGGCACGTTGTGCACACGCACCATCGCC
GCCCCTCGCGAAATAGCCACCGCATTCACCACGCTCGTCATCACGTCCCT
CTCCTCTGCCCTCGGCTCGTCGCACAGTGTGCCCAAAAATTTCTTTCGAC
TGACCCCCACTAGCACCGGAAGCCCTACCATCCTTTCACACACACAGTCC
AATCCTCGCAGCAAGGCCATGTTCACCTCCAGGCCTTTGGCAAACCCAAT
GCCCGGGTCCACCAGCATCGACCATCTCCTCACTCCCTCCTCCTCCGCCC
TCCCCACCGCCCCCCACAGCTCCCCACATACCTCTTCCACAGCATCCTCA
TTGTATGTACTGTGCTGTCTCTGCATCATCGTCTGGGGAGTACCCCGCAT
GTGCATAATTATGTAGGGCACATCCAATGCCGCGACTGTTGCCAACATTT
TTGAATCAAACCCTCCCCCGGACACATCATTAACGATGTCCACCCCCGCC
TCCACCGCTGCTCGGGCCACCCCTGCTCTCCTTGTATCAATCGAAAGCAG
CGTGTCTTTGTCATGCGCGCGAATTCCCTGAATGATAGGCACCACTCGCC
GGAGCTCCTCCTCCTCTCCCACTTCATCGGCCCCAGGCCTCGTCGACTCA
CCCCCTATGTCAATGATCCCGGCCCCCTCCTCCCGCATCCGCACGGCCCT
CTCCACAGCTGCCTCCACGCTCTCTGCATCGATCCCTCCGTCACTAAAGC
TGTCAGGGGTAGCATTCAGAATGCCCATCACTACTGTGGAGGTCTTATTA
TGCGCCGGGTCGAGGGGCAGCAGCAGGCTTCCCTTCTCCCTCCCCCCCCC
CTCCGCCTTTTCAATGGCAACACCCTTACCAAGGGTGGTGTATCCTCTGA
GCGGCTCCGAGCACAAGCCCGTAGCATTTCTTTTACAGTGATCTGCTCTT
GTGAGGGATGACGGAGGGAGGGCGCCAGCTCCGCCAATGGACGCAACACA
AACTCTCGCTCATGCAATCGGACGTGCGGCACGAAAAGCGACCCTTCCTC
GGAGCCCTTTTTCTCGCCGTGCTTCTCGAAGGTGATAGGCTTAGACGGAT
CGTCATCTTCATGGTAGTAGAGAATGTCCAAGTCCAAGGTTCTGGGACCG
AAGCGCTGAGTGCCTTTTACCCGGCCAAGCATCTTCTCAATCTCTTGGAG
GCGAGAGAGGAGGGCCAGGGGAGGGAGAAGCGTCTGAATCCTACAGACAG
CATTGAGAAAGTCGGGTTGCTCCGTCACATACTGGGCTTTGGACTCAAAG
AGGCCCGAGGTGGCTTGGACGTGGCCCAGGGTGGGCTATGTTTGGAAGTG
GGGAGGTTTTTGAGGTTTCTAAGAAAGGGAAGGAAGGGTCAAGGGTCAAA
CCAACACCGAACAAATCCTTACCTCATTGAGTGCCTCCACGGCTCGCTGT
AGATTAAGCGCCCGATCCCCCAGATTGCTGCCAAGGGCGACATAGACGTG
GTAGGGCCGGCGGTGGGGTAGGCGATGTCGGGTAGCCCACGCCAAAGTAT
CCGCACGACCTGTCCGAAGACCCATCAAGGACGACGATAAGCGACCCAAA
AAATGTGTGGACATGCTGCTTGGGTTGGCAGCGAATCAGTCACAAAGTAA
GAAAAGAGAAAACGTTTGCTTCTGTATTTGGTGCCGCACATTTCTCCTAG
GGACCGTACATCTGTGCCAGCCCGTTGCAGCAGCACGACGACGAAAAAAG
TGCTGCGTTCATCTCCTAAATTCATTCGTGCCACGCCCACAACTCCGTCA
CAGACTTACCACCTTTTCCCCACACACGTCTGCGTGTCGTAGATGGTGTA
GCAACGCGATTAGATATTGGTTCATTCAGGCATTTAGACGAAAAGCAAGC
CTGACTTGGCCCATCAAATACTACATATGCCCTCGTTTTTCGTGGCCGGC
AGCAAGCAATTGCAGCACCGAGGCGTGAGAAGGTACATATGAAATTGCAG
ATAATTGACATAAGTACTTCCACTCATCTCCACCTACTATTTGCGTGGTG
AAATCAGACAAACTATGTCGTCCCCACCCGCTGGCACTATAAAGCGGGAC
TATGTGAGAGAAAACCGCAAAGCGATCCGAGAGCTGGAAGACGACGTGCG
GAGCCAACGTGCGTTTACGGACGAGATTATGCGAATGGATGAAGTCAAAA
CAAAATGGAAGATGAACAGGTTCCAGGACATCGAGAGCAAGATGACAGCG
ATCATGGTAAGGAGGGAGTACGGGAATAAGGGAAGACGCAAGAGACTGTG
CTAGCGTCATTTTAAAGACGTCACGTTTTCCCAAAAATCCAGAATAAATC
CGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACCGGTATCTACCACCG
CTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAACAGCAGCAGCAGCA
GCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCTCCTCCCTCAACCCC
TTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCTCGACCAAAGCACTA
AGGTACGAGAAAAAATTAGGACACATCATGCCTCTGCCCTCTTCCTCTCC
TCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCCCTCTCTCATCTGGA
ACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGTGCCCTTGCTCCGTC
CCGCGGTTTCCAAAAACCACATCATCAATAATCGACGAGCGGCTATAAAG
CTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCTTCTTCTTCTTCTTC
TTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCCCTGCTCCTCCAACA
GCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTCACAAAGCCTTCGGG
CGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCTCGCCTTGCCGCCGA
GGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTCTGATATCCCTCCAG
GGATGCGACTCCTGACTGATGCAGAACGAAGCGAAGCCCTTGCTGCCTTG
GATGCGCAAGAACGGGAAATACAATCGATGTTGCTCAAGATCCCCTTGAG
AGTGGACACACCAAGTATGGCTCGAAAGAAGCATGCTTTAGAGGCACGCT
TGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCAAGCCTCGGGTGTTG
ATTAAAGACGGATGAAGATGGTGAGGGAAGAGTAAGTAAGTGTGGATTTA
GGATAGAGAGAAAGTGCCACGATGAAAGGGGACAGGGAATACTGACAGGC
TTATAACAATCGAGAGCATGAAGTGGCTTTGGAAAGGTGGAGAGATCATA
TCTGAAAGGAATCAAATGTAATAGTTGTGGAATTGGCCGATGCGGGAGGG
ATGAGGCGTTACTCTTGATAAATAATGACCTACCCAGCTTTGATTACGCA
TTTAATCATCAGTCCAATTGTCATTGCTCCTTAAAGGACCAAACGCTCTC
GAAATGGGCATCTTACCACACCACCTTTATGTACTGGGATACCAAAAGAA
CAAAAAAGTCAAATGGGCCACTCAAGAGCGCTACCCGAGCAATCACTGCC
TCACATGGCTGAGAAAGGCTCTTTATCAAAAGCGTGTGCCGCTTCATTCC
GAAACCTCGAGCACAAAGACACGAAAGTACCAATTACGATGTAGATGCTT
GAGCACGTGACCTTCTCATAAGAGCGAAATCCCCATTTGCGGTAGGAAAC
TAGCTTATTCAAGGCTTGCATCTCGCGTCCACACACCGGCG back to topCoding sequence (CDS) from alignment at chr23:658071..662261- >NO23G01820.2 ID=NO23G01820.2|Name=NO23G01820.2|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr23:658071..662261- (Nannochloropsis oceanica)
ATGTCGTCCCCACCCGCTGGCACTATAAAGCGGGACTATGTGAGAGAAAA
CCGCAAAGCGATCCGAGAGCTGGAAGACGACGTGCGGAGCCAACGTGCGT
TTACGGACGAGATTATGCGAATGGATGAAGTCAAAACAAAATGGAAGATG
AACAGGTTCCAGGACATCGAGAGCAAGATGACAGCGATCATGAATAAATC
CGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACCGGTATCTACCACCG
CTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAACAGCAGCAGCAGCA
GCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCTCCTCCCTCAACCCC
TTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCTCGACCAAAGCACTA
AGGTACGAGAAAAAATTAGGACACATCATGCCTCTGCCCTCTTCCTCTCC
TCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCCCTCTCTCATCTGGA
ACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGTGCCCTTGCTCCGTC
CCGCGGTTTCCAAAAACCACATCATCAATAATCGACGAGCGGCTATAAAG
CTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCTTCTTCTTCTTCTTC
TTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCCCTGCTCCTCCAACA
GCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTCACAAAGCCTTCGGG
CGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCTCGCCTTGCCGCCGA
GGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTCTGATATCCCTCCAG
GGATGCGACTCCTGACTGATGCAGAACGAAGCGAAGCCCTTGCTGCCTTG
GATGCGCAAGAACGGGAAATACAATCGATGTTGCTCAAGATCCCCTTGAG
AGTGGACACACCAAGTATGGCTCGAAAGAAGCATGCTTTAGAGGCACGCT
TGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCAAGCCTCGGGTGTTG
ATTAAAGACGGATGA back to top
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