NO23G01760.1, NO23G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01760.1
Unique NameNO23G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1029
Alignment locationchr23:641287..642785 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:641287..642785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01760.1 vs.
Match: EWM27773.1 (Trimeric LpxA [Nannochloropsis gaditana])

HSP 1 Score: 425.6 bits (1093), Expect = 9.900e-116
Identity = 210/236 (88.98%), Postives = 227/236 (96.19%), Query Frame = 0 
Query:    1 MSRMIRKGLDTLGKALRETGQALDRAGLEALGTEKHKELWSRHRQVSNLFDQRPRVASNAFVAPSATVVGEVELWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVITTVPTLDTGFPAKVDIGHMVTIGHGATITSATIQDKALIGIGSVVSEGALVETGAQLAAGSVVPPGRRIPAGELWGGNPVKFIRKLEDEEVVANVTAAEAYHALARTHENEFQPFGAAYLDAEKAKLSE 237
            MSR+IRKGLDTLGKALRETGQALDR G+EALG++KHKELWSRHRQVSNLFDQRPRVASNAFV+PSATVVGEV LWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVI TVP+LD+GFPA VDIG++VTIGH ATITSATI+DKAL+GIGS+VSEGALVETGAQLAAGSVVPPG RIPAGELWGGNPVKFIRKLEDEEV+ANV AAEAYHALA++HENEF PFGAAYLDAEK K+S+
Sbjct:   28 MSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK 263
The following BLAST results are available for this feature:
BLAST of NO23G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27773.19.900e-11688.98Trimeric LpxA [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01760NO23G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01760.1NO23G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01760.1.cds1NO23G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01760.1.cds2NO23G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01760.1.cds3NO23G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01760.1 ID=NO23G01760.1|Name=NO23G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
GGCGAGCTTGGCGAAGGGACTCTCGGAGGAGGCAGACCAAACATGGCAGG
GTGCTTATTCTTGATAATCCGTCCATTTCACGCTTTGGCACCTCATTCAT
ACACTCTTGGCCATTCTATTTGAGACTGCTGTGTCCGGGTGGTGTATTTG
GTTCTGGGGTTGGGGTGGTTGGCCCGAACAATCGACATTTAGACCAAGCA
TCATCATCCTCATCCTCGAAGCAAGCAGGGCAAGCAAAATCTAGTCACCC
GCATCGCCTTTACACCCGCACAGGCTACTCTACGACACGCAGCAGCATGT
CGCGCATGATTCGGAAAGGATTGGACACGCTGGGCAAGGCGTTGCGGGAG
ACCGGTCAAGCTTTGGACCGAGCAGGCCTCGAGGCTTTGGGTACGGAGAA
GCACAAGGAGCTTTGGTCACGACACCGCCAAGTCTCCAACCTTTTCGACC
AACGCCCGCGCGTCGCCAGCAATGCCTTCGTCGCCCCATCGGCCACGGTC
GTGGGTGAAGTCGAGCTCTGGGACAAGGTCTCCATCTGGTACGGCGCTGT
CATCCGCGGCGATCGCAACAGCGTCAAGATCGGGAATTGTACCAATGTGC
AAGACCACGCGGTTATCACCACAGTCCCCACACTCGATACGGGCTTTCCC
GCCAAGGTTGACATCGGACACATGGTCACTATCGGCCACGGCGCGACCAT
CACCTCAGCCACCATCCAAGACAAAGCACTCATCGGGATCGGGAGCGTCG
TCTCCGAAGGCGCGCTTGTCGAAACCGGCGCCCAGCTCGCGGCCGGTTCC
GTGGTCCCGCCCGGGCGCCGCATCCCTGCAGGAGAGCTCTGGGGCGGCAA
CCCCGTCAAATTTATCCGTAAGCTGGAGGATGAGGAGGTAGTGGCAAATG
TGACGGCAGCAGAGGCCTACCATGCCTTGGCTCGCACCCATGAGAATGAG
TTCCAACCCTTTGGGGCTGCTTACCTGGACGCGGAGAAGGCGAAGCTGTC
TGAGTAGAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of NO23G01760.1

>NO23G01760.1-protein ID=NO23G01760.1-protein|Name=NO23G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSRMIRKGLDTLGKALRETGQALDRAGLEALGTEKHKELWSRHRQVSNLF
DQRPRVASNAFVAPSATVVGEVELWDKVSIWYGAVIRGDRNSVKIGNCTN
VQDHAVITTVPTLDTGFPAKVDIGHMVTIGHGATITSATIQDKALIGIGS
VVSEGALVETGAQLAAGSVVPPGRRIPAGELWGGNPVKFIRKLEDEEVVA
NVTAAEAYHALARTHENEFQPFGAAYLDAEKAKLSE*
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mRNA from alignment at chr23:641287..642785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01760.1 ID=NO23G01760.1|Name=NO23G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at chr23:641287..642785+ (Nannochloropsis oceanica)
GGCGAGCTTGGCGAAGGGACTCTCGGAGGAGGCAGACCAAACATGGCAGG
GTGCTTATTCTTGATAATCCGTCCATTTCACGCTTTGGCACCTCATTCAT
ACACTCTTGGCCATTCTATTTGAGACTGCTGTGTCCGGGTGGTGTATTTG
GTTCTGGGGTTGGGGTGGTTGGCCCGAACAATCGACATTTAGACCAAGCA
TCATCATCCTCATCCTCGAAGCAAGCAGGGCAAGCAAAATCTAGTCACCC
GCATCGCCTTTACACCCGCACAGGCTACTCTACGACACGCAGCAGCATGT
CGCGCATGATTCGGAAAGGATTGGACACGCTGGGCAAGGCGTTGCGGGAG
ACCGGTCAAGCTTTGGACCGAGCAGGCCTCGAGGCTTTGGGTACGGAGAA
GCACAAGGAGCTTTGTAAGTACTCTTGCGCGTTTGGATCAGTGCATGCTC
TTGACCTCGATGTGAATTTATAGGCTTGTAGATGTGCTTGGATTCTACAG
GCCCCTGCTAGTGCTCCTGTGCCGTCTCGTGACGTGTATGACAGGAAGGC
TTCCGCATCCCCTCCTCTCTCTTCCCCTCTCCCGTTCTCATCCCCTCTTT
CTCGGTCTGTTCACCCATCATCCATGTCTGTGCAACAGGGTCACGACACC
GCCAAGTCTCCAACCTTTTCGACCAACGCCCGCGCGTCGCCAGCAATGCC
TTCGTCGCCCCATCGGCCACGGTCGTGGGTGAAGTCGAGCTCTGGGACAA
GGTCTCCATCTGGTACGGCGCTGTCATCCGCGGCGATCGCAACAGCGTCA
AGATCGGGAATTGTACCAATGTGCAAGACCACGCGGTTATCACCACAGTC
CCCACACTCGATACGGGCTTTCCCGCCAAGGTTGACATCGGACACATGGT
CACTATCGGTAAGTCTTTTTTGAGGAGGTGTGATGCTTCTCCCTCCCTCT
CAGTGCAACATGTGTCGACTCTACCTTTCTAGTTCTCATTCTCCGGCCCT
TATCGTCTGCTCAGTGTTGACGAAATCTCCCTCCCCTGTCTTCTCTCTCC
CTTGGGGCTTGGGCGTGACTATCACCTCCGCCACCATCCACGAAAAGGCT
CTCATCAGCACCCTCACCACCCTCCCTCCCTTCCTCCCTCTCCTAACCCC
GCAGGCCACGGCGCGACCATCACCTCAGCCACCATCCAAGACAAAGCACT
CATCGGGATCGGGAGCGTCGTCTCCGAAGGCGCGCTTGTCGAAACCGGCG
CCCAGCTCGCGGCCGGTTCCGTGGTCCCGCCCGGGCGCCGCATCCCTGCA
GGAGAGCTCTGGGGCGGCAACCCCGTCAAATTTATCCGTAAGCTGGAGGA
TGAGGAGGTAGTGGCAAATGTGACGGCAGCAGAGGCCTACCATGCCTTGG
CTCGCACCCATGAGAATGAGTTCCAACCCTTTGGGGCTGCTTACCTGGAC
GCGGAGAAGGCGAAGCTGTCTGAGTAGAGGGAGGGAGGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at chr23:641287..642785+

>NO23G01760.1 ID=NO23G01760.1|Name=NO23G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr23:641287..642785+ (Nannochloropsis oceanica)
ATGTCGCGCATGATTCGGAAAGGATTGGACACGCTGGGCAAGGCGTTGCG
GGAGACCGGTCAAGCTTTGGACCGAGCAGGCCTCGAGGCTTTGGGTACGG
AGAAGCACAAGGAGCTTTGGTCACGACACCGCCAAGTCTCCAACCTTTTC
GACCAACGCCCGCGCGTCGCCAGCAATGCCTTCGTCGCCCCATCGGCCAC
GGTCGTGGGTGAAGTCGAGCTCTGGGACAAGGTCTCCATCTGGTACGGCG
CTGTCATCCGCGGCGATCGCAACAGCGTCAAGATCGGGAATTGTACCAAT
GTGCAAGACCACGCGGTTATCACCACAGTCCCCACACTCGATACGGGCTT
TCCCGCCAAGGTTGACATCGGACACATGGTCACTATCGGCCACGGCGCGA
CCATCACCTCAGCCACCATCCAAGACAAAGCACTCATCGGGATCGGGAGC
GTCGTCTCCGAAGGCGCGCTTGTCGAAACCGGCGCCCAGCTCGCGGCCGG
TTCCGTGGTCCCGCCCGGGCGCCGCATCCCTGCAGGAGAGCTCTGGGGCG
GCAACCCCGTCAAATTTATCCGTAAGCTGGAGGATGAGGAGGTAGTGGCA
AATGTGACGGCAGCAGAGGCCTACCATGCCTTGGCTCGCACCCATGAGAA
TGAGTTCCAACCCTTTGGGGCTGCTTACCTGGACGCGGAGAAGGCGAAGC
TGTCTGAGTAG
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Synonyms
Publications