NO23G01560.1, NO23G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01560.1
Unique NameNO23G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length813
Alignment locationchr23:574469..576244 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:574469..576244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01560.1 vs.
Match: EWM27835.1 (naphthoate synthase [Nannochloropsis gaditana])

HSP 1 Score: 393.7 bits (1010), Expect = 4.200e-106
Identity = 189/217 (87.10%), Postives = 202/217 (93.09%), Query Frame = 0 
Query:    1 MAPSLLRTPPPPTPRRDGFHRTSSGPAAWEDRSQALGLTDVIYRVAPQEGIAKLSINRPSVRNAFRPTTIRELKRCVALAQDDLQVGVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPVVAMVAGYAIGGGHILHMLCDLTISADNAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSAQEALEMGV 218
            M+    R  PPPTPRRD FH TS  PAAW+D+S ALGLTDVIYR AP+EGIAKLSINRPS+RNAFRPTTIRELKRC+ALAQDDL++GVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKP++AMVAGYAIGGGHILHMLCDLTI A+NAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSA EA +MG+
Sbjct:    1 MSEHAARKAPPPTPRRDAFHLTSCAPAAWQDQSTALGLTDVIYRTAPEEGIAKLSINRPSLRNAFRPTTIRELKRCLALAQDDLKIGVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPIIAMVAGYAIGGGHILHMLCDLTICAENAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSAHEAQDMGL 217
The following BLAST results are available for this feature:
BLAST of NO23G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27835.14.200e-10687.10naphthoate synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01560NO23G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01560.1NO23G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01560.1.cds1NO23G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01560.1.cds2NO23G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01560.1.cds3NO23G01560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01560.1.cds4NO23G01560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01560.1.cds5NO23G01560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01560.1.cds6NO23G01560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01560.1 ID=NO23G01560.1|Name=NO23G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ACAGGTAGTTCTACAACACCTCTCGCATGGCTCCTTCATTGTTACGCACC
CCGCCTCCTCCGACGCCTCGTCGCGACGGCTTTCACCGGACCTCTTCCGG
CCCAGCGGCATGGGAAGATCGAAGCCAAGCCCTTGGGCTGACCGACGTCA
TTTATCGCGTCGCACCGCAAGAGGGTATCGCCAAGCTCAGCATTAACCGC
CCGTCAGTTAGAAATGCGTTTCGTCCCACTACCATTCGGGAGCTCAAGCG
CTGCGTGGCTTTGGCCCAGGATGACTTGCAAGTGGGCGTTATCATACTGA
CTGGGGAAGGCGACGAGGCCTTCTGTTCCGGCGGCGATCAAAGTGTGCGG
GGAGAGGGGGGGTACGACGATGGGAGCGAGGAGGCACCGAGGCTTACGGT
GTTGGATTTGCAGGTGCAAATGCGGCGGTGTCCTAAGCCTGTGGTTGCCA
TGGTGGCTGGGTATGCCATTGGGGGCGGGCACATTTTGCACATGTTGTGC
GATTTGACGATAAGCGCCGACAACGCCGTCTTTGGACAGACAGGGCCTCG
GGTTGGCAGTTTCGATGCAGGCTACGGCAGCAGCCATATGGCCCGCCTGG
TGGGACAGAAAAAAGCCCGCGAAATTTGGTTTCTGTGTCGGTTTTATTCA
GCGCAAGAGGCGCTTGAGATGGGGGTAAGGAGGCAGAGAGAGAGAAAGGG
AAGAAGGGAGGGGAAGCGTCTTTCTTGTTCCATTTGTGAGTGGTGACCAC
CATCGCCCCCCTGACTTTACCCTCCCTCCCTCCCTCCCTGCCTGCCTTCC
CCTCCTCCCTCCC
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protein sequence of NO23G01560.1

>NO23G01560.1-protein ID=NO23G01560.1-protein|Name=NO23G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MAPSLLRTPPPPTPRRDGFHRTSSGPAAWEDRSQALGLTDVIYRVAPQEG
IAKLSINRPSVRNAFRPTTIRELKRCVALAQDDLQVGVIILTGEGDEAFC
SGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPVVAMVAGYAIGG
GHILHMLCDLTISADNAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREI
WFLCRFYSAQEALEMGVRRQRERKGRREGKRLSCSICEW*
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mRNA from alignment at chr23:574469..576244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01560.1 ID=NO23G01560.1|Name=NO23G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr23:574469..576244+ (Nannochloropsis oceanica)
ACAGGTAGTTCTACAACACCTCTCGCATGGCTCCTTCATTGTTACGCACC
CCGCCTCCTCCGACGCCTCGTCGCGACGGCTTTCACCGGGTGCGTTTTAG
CCTCCTCACTCCGCGCATTCTGCCTACAGTCTCACCCTCCATGTCTTCCT
GCCCCTGTCCCGCCGTCTCTCCTCGCCCTTTCCTCTTGTGCCCTAATTTG
TAATTTCTCACATTCATTTCGCTTTCTACCTTCCCATTTTCTGCTTTCAC
GCAATGAAAAAGACCTCTTCCGGCCCAGCGGCATGGGAAGATCGAAGCCA
AGCCCTTGGGCTGACCGACGTCATTTATCGCGTCGCACCGCAAGAGGGTA
ATAACGCGAAAGAGAAAGGGAAAAGGGTGAAGAAGGAGCGGAGAGATAGC
AACTAAGAAGGGGAAATGGGAACCACGAGCTCCAGCTTCCTCAACCTGTC
ATCCATCGCATTCATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCCC
TTCCTCCCCTCTCTTTCCTGGTTTCAGGTATCGCCAAGCTCAGCATTAAC
CGCCCGTCAGTTAGAAATGCGTTTCGTCCCACTACCATTCGGGAGCTCAA
GCGCTGCGTGGCTTTGGCCCAGGATGACTTGCAAGTGGGCGTTATCATAC
TGACTGGTAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGGA
TGGCTGCAAAGATCCATCTCTGAAATTTAAGATGGCTGCCTATTTATTCT
TAGTCGTAATTGTAATCATTATTTGGGTCTTAGCATCGATTTTCACCTCT
ACCTTAGTCTCAACTTTACATCTTGCCCTTCTTACTACTATTTTCCTTCT
CGCACAGGGGAAGGCGACGAGGCCTTCTGTTCCGGCGGCGATCAAAGTGT
GCGGGGAGAGGGGGGGTACGACGATGGGAGCGAGGAGGCACCGAGGCTTA
CGGTGTTGGATTTGCAGGTAGAGAGGGAGGGAGGAAGAGAGGAAGGGAGG
GAGAGAAGGAGGGAAAAGGAATGGCACCAGGCTATGTCCGGGCATCTTAT
CAAGACTCCGCCCTCTATCCTTTTCTCTCTTCCTCCTTCCCTCCCTCCCT
CAGGTGCAAATGCGGCGGTGTCCTAAGCCTGTGGTTGCCATGGTGGCTGG
GTATGCCATTGGGGGCGGGCACATTTTGCACATGTTGTGCGATTTGACGA
TAAGCGCCGACAACGCCGTCTTTGGACAGACAGGGCCTCGGGTTGGCAGG
TGGGGTGGACGAGTGGATGGTTGAATGGGTGGGGGTGTGTGGGTAGGTGG
GCAGGTGGATGGGAGGTATGCGCGGTAGATGGCGATGTTTTCTTCCTTTT
CCTCCCTTTCTCGTTCCCTCCTTCCCTCCTTTCCTCCTTCCCTGCCTGCT
CATCTCCTTCTCTGCCCTCACACCTCCCCCATGCCATGCCTCTAAAATTC
TCACGTGTCATTTTCCCCCTTCCTCTTTCCTTTCTTGTCCATTCCTCTTT
TCCTCCCTCCCCCCTCCTCAAGTTTCGATGCAGGCTACGGCAGCAGCCAT
ATGGCCCGCCTGGTGGGACAGAAAAAAGCCCGCGAAATTTGGTTTCTGTG
TCGGTTTTATTCAGCGCAAGAGGCGCTTGAGATGGGGGTAAGGAGGCAGA
GAGAGAGAAAGGGAAGAAGGGAGGGGAAGCGTCTTTCTTGTTCCATTTGT
GAGTGGTGACCACCATCGCCCCCCTGACTTTACCCTCCCTCCCTCCCTCC
CTGCCTGCCTTCCCCTCCTCCCTCCC
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Coding sequence (CDS) from alignment at chr23:574469..576244+

>NO23G01560.1 ID=NO23G01560.1|Name=NO23G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr23:574469..576244+ (Nannochloropsis oceanica)
ATGGCTCCTTCATTGTTACGCACCCCGCCTCCTCCGACGCCTCGTCGCGA
CGGCTTTCACCGGACCTCTTCCGGCCCAGCGGCATGGGAAGATCGAAGCC
AAGCCCTTGGGCTGACCGACGTCATTTATCGCGTCGCACCGCAAGAGGGT
ATCGCCAAGCTCAGCATTAACCGCCCGTCAGTTAGAAATGCGTTTCGTCC
CACTACCATTCGGGAGCTCAAGCGCTGCGTGGCTTTGGCCCAGGATGACT
TGCAAGTGGGCGTTATCATACTGACTGGGGAAGGCGACGAGGCCTTCTGT
TCCGGCGGCGATCAAAGTGTGCGGGGAGAGGGGGGGTACGACGATGGGAG
CGAGGAGGCACCGAGGCTTACGGTGTTGGATTTGCAGGTGCAAATGCGGC
GGTGTCCTAAGCCTGTGGTTGCCATGGTGGCTGGGTATGCCATTGGGGGC
GGGCACATTTTGCACATGTTGTGCGATTTGACGATAAGCGCCGACAACGC
CGTCTTTGGACAGACAGGGCCTCGGGTTGGCAGTTTCGATGCAGGCTACG
GCAGCAGCCATATGGCCCGCCTGGTGGGACAGAAAAAAGCCCGCGAAATT
TGGTTTCTGTGTCGGTTTTATTCAGCGCAAGAGGCGCTTGAGATGGGGGT
AAGGAGGCAGAGAGAGAGAAAGGGAAGAAGGGAGGGGAAGCGTCTTTCTT
GTTCCATTTGTGAGTGGTGA
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Synonyms
Publications