NO23G01120.1, NO23G01120.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01120.1
Unique Name	NO23G01120.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2208
Alignment location	chr23:410154..412879 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:410154..412879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO23G01120.1 vs.

BLAST of NO23G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01120	NO23G01120	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01120.1	NO23G01120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01120.1.cds1	NO23G01120.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01120.1.cds2	NO23G01120.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01120.1.cds3	NO23G01120.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:410154..412879+
coding sequence from alignment at chr23:410154..412879+

mRNA sequence

>NO23G01120.1 ID=NO23G01120.1|Name=NO23G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
ATGTCCTCGTATTCCCTTGGCGAGAAAGAGGAGGCGATGAAAGTGTTGAG
AACGAAGAGGGGGAGGCAGGCCTTAAGGGAGGAAGGGTCAAAATTGACCT
ATGGGAGAGTGACGGCGTTCAAGTACTTTTGCAAGTACATGGGAATGGAG
GAGGAGGAGGAGGGAGGAAGGGAGGGAGGGAGGGATGATGCGCCTCTTTG
TGATCCTCCCCCTCCTCCTCCTTCACCGTCGGCAAGCGGAGGAGAAGGAG
GGAGGGGATGTTTGACAGGCTTGGTGTTGCTTCAGAAGGAGGTGAAGAGA
GGTTTCAAGAAATGGTTGATGCGCCGAGGAGGAGGGCATGGGGGAGGGCG
AGAAGTAGGGAAGGAAACGGCGGATGGATACTTGACCGTTTCGCTGTACA
TCTTACACCAGACATTTAATCGGGCTAGGCCACGGAGAGCCCCCACAGCC
ATGGGTCCTTGTGAGGCGCTCTCGTTCATCACCACTCATCACTGCCTAGT
GTCCCACCTCCTGGCAACGGCCTCATCTCCTCGTTTCCCTCCCCAAGTCG
TGCAGACCGCCTGGCGACAGTTTGTGAAGTACCTGAAGCACCGCTCCACC
ACCTCCTCGTCGTCGTTCCCCCAGCCCCACTCCTTCTCCTCATTGTACAA
TCCCGTTTCGTCGGGCCGCATCGCCTCCAACCTCCGCGCGCATTTCGCGG
GGCTGGGGGTCATTGAAGAGCCCTTGGCCCTCGAATTTCAAAAATATCTC
CTTTCCTTGCCGCCACCCGCGGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GGCATTGGCGCCTATAACTGCCTATCGGTACACCCGGTCCCTGGCACGGG
CGTTCAAGATAGAGGTATGGGAGGAGGAAATGCGGGGGGGGGAGGAAGAG
GTGGAGAGCGCACCGGCAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
GGCAGGGCGACGCATGCCGTGGCACCGCTCTCGCGTGTTTAATTTTTTCC
TCGCCCCTAAGAATGAGGGAAGGATTCTAGTGATGAAGAGGCGGACGAGT
GACAAGAGCACCCGGGCGGCCTTGAAGTATTTTGTGGATTTCTGCCGTGC
CTGTCGGCGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGGG
TGCTGCCCTTGCCCCGGGTTACAGTGGAGGGTTCTCACTTGAAGGGGACG
GCCATGGGAGAGATGGCGCTGAGGGAGGTCGGGGAGGAGGTAGAGGAGGA
GGAGGTAGAGGAGGAGGAGGAAGAGGAGGAGGTAGAGGAAGAGGAGGAGG
AGGAGGAGGAAAGGGAGAAGGGCGAGAAGAGGGAAGCAAAGAAAAAGGGG
AAGAAGAGAAGATGGGCGTCGGAAAGAGAGGACGAGGACGAGGACGAGGG
CGAGGAAGGAAGGGAAGACCCAAAATTAAAGAGGCCCGAAAGGCGCAGTC
TCTTCGCTTCCGAAATCGGAGGGGGAGGGAGGCTGGGAGGGATGGTGGGA
GGGATGGGAGGGAGGAGGCGGGAAGAGTTTGAGTCGTGGTGTAGGGAGGC
GAAGGGTCTGGCAGGTGGAGCTATCTACGGGCTGAAGGTTGAGAGACTGC
TGGGGAAAGTTTGGCAGCAGCAGCAGCAGCACCACCACCACCACCAGCAG
CAGCAGCACCACCACCACCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCC
GCCGCCGTCGTCGTTAGCCAAGTGCAGCGACGAGGACTTTCAGCGATGGG
TTATCTCCGTCGAGTCCTCTCTCGCTTCCTCTTCCCCCTCCTCCTCCTCC
TCCTCTTCGCTCCCTTCCTCGTCTTCGGGGGTGGTGCATCAATCCGTCGC
TCTCTTTTGGGAGTGGGTGACAGGGCAGTCGTGGCCTCATCCTCCCCCTT
CCTCCCTCCCTCCCCCTCTTTTGGAGCAAGGGAAGGATGACAATGGAAAG
ATGAAGGAAGACGAGGACGAGGACGAGGAAAGGAGGAAGGAAGGGATTGC
TGGTCGAGGCGGAGATGGGAGAAGGCTGCTCTGGGATGGCACTGAGGATG
GGAGAGGAGGAGGGAGGGAGGGAGGGATGGCTATCGGGAAGGAGAGAGGG
GCAGCTCAATCAATCCTAGGCAAAGATGACGCCTCCTCCGATGAGGAAGA
GAGGGAAGAGGAAGGGGGGGGAGGGAGGGAGGGGTGCAGATGCCCAAGCA
AGCGATGA

protein sequence of NO23G01120.1

>NO23G01120.1-protein ID=NO23G01120.1-protein|Name=NO23G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MSSYSLGEKEEAMKVLRTKRGRQALREEGSKLTYGRVTAFKYFCKYMGME
EEEEGGREGGRDDAPLCDPPPPPPSPSASGGEGGRGCLTGLVLLQKEVKR
GFKKWLMRRGGGHGGGREVGKETADGYLTVSLYILHQTFNRARPRRAPTA
MGPCEALSFITTHHCLVSHLLATASSPRFPPQVVQTAWRQFVKYLKHRST
TSSSSFPQPHSFSSLYNPVSSGRIASNLRAHFAGLGVIEEPLALEFQKYL
LSLPPPAGREGGREGGRALAPITAYRYTRSLARAFKIEVWEEEMRGGEEE
VESAPAGGREGGREGGRAGRRMPWHRSRVFNFFLAPKNEGRILVMKRRTS
DKSTRAALKYFVDFCRACRRGREGGREGGREGWVLPLPRVTVEGSHLKGT
AMGEMALREVGEEVEEEEVEEEEEEEEVEEEEEEEEEREKGEKREAKKKG
KKRRWASEREDEDEDEGEEGREDPKLKRPERRSLFASEIGGGGRLGGMVG
GMGGRRREEFESWCREAKGLAGGAIYGLKVERLLGKVWQQQQQHHHHHQQ
QQHHHHQQQQPPPPPPPPPSSLAKCSDEDFQRWVISVESSLASSSPSSSS
SSSLPSSSSGVVHQSVALFWEWVTGQSWPHPPPSSLPPPLLEQGKDDNGK
MKEDEDEDEERRKEGIAGRGGDGRRLLWDGTEDGRGGGREGGMAIGKERG
AAQSILGKDDASSDEEEREEEGGGGREGCRCPSKR*

mRNA from alignment at chr23:410154..412879+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01120.1 ID=NO23G01120.1|Name=NO23G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2726bp|location=Sequence derived from alignment at chr23:410154..412879+ (Nannochloropsis oceanica)
ATGTCCTCGTATTCCCTTGGCGAGAAAGAGGAGGCGATGAAAGTGTTGAG
AACGAAGAGGGGGAGGCAGGCCTTAAGGGAGGAAGGGTCAAAATTGACCT
ATGGGAGAGTGACGGCGTTCAAGTACTTTTGCAAGTACATGGGAATGGAG
GAGGAGGAGGAGGGAGGAAGGGAGGGAGGGAGGGATGATGCGCCTCTTTG
TGATCCTCCCCCTCCTCCTCCTTCACCGTCGGCAAGCGGAGGAGAAGGAG
GGAGGGGATGTTTGACAGGCTTGGTGTTGCTTCAGAAGGAGGTGAAGAGA
GGTTTCAAGAAATGGTTGATGCGCCGAGGAGGAGGGCATGGGGGAGGGCG
AGAAGTAGGGAAGGAAACGGCGGATGGATACTTGACCGTTTCGCTGTACA
TCTTACACCAGACATTTAATCGGGCTAGGCCACGGAGAGGTAGGGACGGA
AAGAGGGAGGGAGGGAGGGAGGTAGAGGAGGGAGGATCTCTCCCGAAATG
GTCCTCATTTTCCGCCGGTATGTCCTTACCCCTCGCTCCCTCTCTCTTCC
TCCCTCCCTCCCTCCCTCCTTTCTCCCTCCCTCCAGCCCCCACAGCCATG
GGTCCTTGTGAGGCGCTCTCGTTCATCACCACTCATCACTGCCTAGTGTC
CCACCTCCTGGCAACGGCCTCATCTCCTCGTTTCCCTCCCCAAGTCGTGC
AGACCGCCTGGCGACAGTTTGTGAAGTACCTGAAGGTGGGGAAGGAGGGA
GGCAGAGAGAGAGGGAGAGGTGGGCTGGATGTGTGAATAATAAGGTATGC
CTTGTCTCCTTCCATCGTATCCTTATCTTGATCCCTCCTTGTCCTTCTCT
GAAAAAGTCGCATCCTTCCAGCCCTCCCACCTCTTCCTTCCTCCCTTCTC
CTTCTCCCCCCTCCGCCTTCCTATTCTTCAACCTCCCTCCCATCTACGCG
TACTGCGGCCTTCGTTTTTTAGTTCGACTTCGAGGATGGCATCCATTTCC
TCTTATTGAAGAAAATCCCTTTCCCTCTTTCCACTTCGACTTGTCACACT
GAATACACACACCTTTCCCTTCCTTTTCCCTCTCCCTCTTTCCTTCTACC
ACGCAGCACCGCTCCACCACCTCCTCGTCGTCGTTCCCCCAGCCCCACTC
CTTCTCCTCATTGTACAATCCCGTTTCGTCGGGCCGCATCGCCTCCAACC
TCCGCGCGCATTTCGCGGGGCTGGGGGTCATTGAAGAGCCCTTGGCCCTC
GAATTTCAAAAATATCTCCTTTCCTTGCCGCCACCCGCGGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGGGCATTGGCGCCTATAACTGCCTATCGGTACA
CCCGGTCCCTGGCACGGGCGTTCAAGATAGAGGTATGGGAGGAGGAAATG
CGGGGGGGGGAGGAAGAGGTGGAGAGCGCACCGGCAGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGGCGGGCAGGGCGACGCATGCCGTGGCACCGCTCTC
GCGTGTTTAATTTTTTCCTCGCCCCTAAGAATGAGGGAAGGATTCTAGTG
ATGAAGAGGCGGACGAGTGACAAGAGCACCCGGGCGGCCTTGAAGTATTT
TGTGGATTTCTGCCGTGCCTGTCGGCGGGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGTTGGGTGCTGCCCTTGCCCCGGGTTACAGTGGAGGGT
TCTCACTTGAAGGGGACGGCCATGGGAGAGATGGCGCTGAGGGAGGTCGG
GGAGGAGGTAGAGGAGGAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGAGG
TAGAGGAAGAGGAGGAGGAGGAGGAGGAAAGGGAGAAGGGCGAGAAGAGG
GAAGCAAAGAAAAAGGGGAAGAAGAGAAGATGGGCGTCGGAAAGAGAGGA
CGAGGACGAGGACGAGGGCGAGGAAGGAAGGGAAGACCCAAAATTAAAGA
GGCCCGAAAGGCGCAGTCTCTTCGCTTCCGAAATCGGAGGGGGAGGGAGG
CTGGGAGGGATGGTGGGAGGGATGGGAGGGAGGAGGCGGGAAGAGTTTGA
GTCGTGGTGTAGGGAGGCGAAGGGTCTGGCAGGTGGAGCTATCTACGGGC
TGAAGGTTGAGAGACTGCTGGGGAAAGTTTGGCAGCAGCAGCAGCAGCAC
CACCACCACCACCAGCAGCAGCAGCACCACCACCACCAGCAGCAGCAGCC
GCCGCCGCCGCCGCCGCCGCCGCCGTCGTCGTTAGCCAAGTGCAGCGACG
AGGACTTTCAGCGATGGGTTATCTCCGTCGAGTCCTCTCTCGCTTCCTCT
TCCCCCTCCTCCTCCTCCTCCTCTTCGCTCCCTTCCTCGTCTTCGGGGGT
GGTGCATCAATCCGTCGCTCTCTTTTGGGAGTGGGTGACAGGGCAGTCGT
GGCCTCATCCTCCCCCTTCCTCCCTCCCTCCCCCTCTTTTGGAGCAAGGG
AAGGATGACAATGGAAAGATGAAGGAAGACGAGGACGAGGACGAGGAAAG
GAGGAAGGAAGGGATTGCTGGTCGAGGCGGAGATGGGAGAAGGCTGCTCT
GGGATGGCACTGAGGATGGGAGAGGAGGAGGGAGGGAGGGAGGGATGGCT
ATCGGGAAGGAGAGAGGGGCAGCTCAATCAATCCTAGGCAAAGATGACGC
CTCCTCCGATGAGGAAGAGAGGGAAGAGGAAGGGGGGGGAGGGAGGGAGG
GGTGCAGATGCCCAAGCAAGCGATGA

Coding sequence (CDS) from alignment at chr23:410154..412879+

>NO23G01120.1 ID=NO23G01120.1|Name=NO23G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at chr23:410154..412879+ (Nannochloropsis oceanica)
ATGTCCTCGTATTCCCTTGGCGAGAAAGAGGAGGCGATGAAAGTGTTGAG
AACGAAGAGGGGGAGGCAGGCCTTAAGGGAGGAAGGGTCAAAATTGACCT
ATGGGAGAGTGACGGCGTTCAAGTACTTTTGCAAGTACATGGGAATGGAG
GAGGAGGAGGAGGGAGGAAGGGAGGGAGGGAGGGATGATGCGCCTCTTTG
TGATCCTCCCCCTCCTCCTCCTTCACCGTCGGCAAGCGGAGGAGAAGGAG
GGAGGGGATGTTTGACAGGCTTGGTGTTGCTTCAGAAGGAGGTGAAGAGA
GGTTTCAAGAAATGGTTGATGCGCCGAGGAGGAGGGCATGGGGGAGGGCG
AGAAGTAGGGAAGGAAACGGCGGATGGATACTTGACCGTTTCGCTGTACA
TCTTACACCAGACATTTAATCGGGCTAGGCCACGGAGAGCCCCCACAGCC
ATGGGTCCTTGTGAGGCGCTCTCGTTCATCACCACTCATCACTGCCTAGT
GTCCCACCTCCTGGCAACGGCCTCATCTCCTCGTTTCCCTCCCCAAGTCG
TGCAGACCGCCTGGCGACAGTTTGTGAAGTACCTGAAGCACCGCTCCACC
ACCTCCTCGTCGTCGTTCCCCCAGCCCCACTCCTTCTCCTCATTGTACAA
TCCCGTTTCGTCGGGCCGCATCGCCTCCAACCTCCGCGCGCATTTCGCGG
GGCTGGGGGTCATTGAAGAGCCCTTGGCCCTCGAATTTCAAAAATATCTC
CTTTCCTTGCCGCCACCCGCGGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GGCATTGGCGCCTATAACTGCCTATCGGTACACCCGGTCCCTGGCACGGG
CGTTCAAGATAGAGGTATGGGAGGAGGAAATGCGGGGGGGGGAGGAAGAG
GTGGAGAGCGCACCGGCAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
GGCAGGGCGACGCATGCCGTGGCACCGCTCTCGCGTGTTTAATTTTTTCC
TCGCCCCTAAGAATGAGGGAAGGATTCTAGTGATGAAGAGGCGGACGAGT
GACAAGAGCACCCGGGCGGCCTTGAAGTATTTTGTGGATTTCTGCCGTGC
CTGTCGGCGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGGG
TGCTGCCCTTGCCCCGGGTTACAGTGGAGGGTTCTCACTTGAAGGGGACG
GCCATGGGAGAGATGGCGCTGAGGGAGGTCGGGGAGGAGGTAGAGGAGGA
GGAGGTAGAGGAGGAGGAGGAAGAGGAGGAGGTAGAGGAAGAGGAGGAGG
AGGAGGAGGAAAGGGAGAAGGGCGAGAAGAGGGAAGCAAAGAAAAAGGGG
AAGAAGAGAAGATGGGCGTCGGAAAGAGAGGACGAGGACGAGGACGAGGG
CGAGGAAGGAAGGGAAGACCCAAAATTAAAGAGGCCCGAAAGGCGCAGTC
TCTTCGCTTCCGAAATCGGAGGGGGAGGGAGGCTGGGAGGGATGGTGGGA
GGGATGGGAGGGAGGAGGCGGGAAGAGTTTGAGTCGTGGTGTAGGGAGGC
GAAGGGTCTGGCAGGTGGAGCTATCTACGGGCTGAAGGTTGAGAGACTGC
TGGGGAAAGTTTGGCAGCAGCAGCAGCAGCACCACCACCACCACCAGCAG
CAGCAGCACCACCACCACCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCC
GCCGCCGTCGTCGTTAGCCAAGTGCAGCGACGAGGACTTTCAGCGATGGG
TTATCTCCGTCGAGTCCTCTCTCGCTTCCTCTTCCCCCTCCTCCTCCTCC
TCCTCTTCGCTCCCTTCCTCGTCTTCGGGGGTGGTGCATCAATCCGTCGC
TCTCTTTTGGGAGTGGGTGACAGGGCAGTCGTGGCCTCATCCTCCCCCTT
CCTCCCTCCCTCCCCCTCTTTTGGAGCAAGGGAAGGATGACAATGGAAAG
ATGAAGGAAGACGAGGACGAGGACGAGGAAAGGAGGAAGGAAGGGATTGC
TGGTCGAGGCGGAGATGGGAGAAGGCTGCTCTGGGATGGCACTGAGGATG
GGAGAGGAGGAGGGAGGGAGGGAGGGATGGCTATCGGGAAGGAGAGAGGG
GCAGCTCAATCAATCCTAGGCAAAGATGACGCCTCCTCCGATGAGGAAGA
GAGGGAAGAGGAAGGGGGGGGAGGGAGGGAGGGGTGCAGATGCCCAAGCA
AGCGATGA

Synonyms

Publications