NO23G00620.1, NO23G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00620.1
Unique NameNO23G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr23:251478..253211 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:251478..253211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G00620.1 vs.
Match: EWM28304.1 (fatty-acyl [Nannochloropsis gaditana])

HSP 1 Score: 305.8 bits (782), Expect = 1.500e-79
Identity = 154/286 (53.85%), Postives = 193/286 (67.48%), Query Frame = 0 
Query:   26 RGNEFHQVFQGFPALAPLYMDWEKNYNAEKVFWFIIDNSWIPWFSLCVYLLFIFGYPALAKRYNIGYISARTQMACWNFLLASFSWIGAMRVVPHFFFLLKDVGFEEVLCGAPEPLYGDGAVGFWIQAFVLSKVAELLDTVFVVLRQKDPIFLHWYHHVTVLLFTWFTYSNENPGIIFIAMNYSVHAVMYTYYWLAIVKRVPDWFPTWLITLAQIAQMIVGVFVAYNYYRVLSSGGSCAVSTDLLWACALMYSTYLYLFCEFAVRRYILGRGNRAVAAGKGKKKTK 312
            RG+ F Q+FQ  PA+ P YM+WEK Y++  V+ ++    W+P   + +Y++ IFG  AL K  N      +  +A WN  L+ FS +G +RVVPH  +L    G   V CGAPEPLYG+ AVGFW+QAF+LSK+AEL+DT F+VLR+K   FLHWYHHVTVLLFTWF Y++ENPGIIF+AMNYSVHA+MY YY+L  V+  P W     ITL QI+QM+VGV  A  Y   + +G  CAV  DLL AC +MYSTYLYLFCEFAVRR+ILG          G  K K
Sbjct:   37 RGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMK--NRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMK 320
The following BLAST results are available for this feature:
BLAST of NO23G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28304.11.500e-7953.85fatty-acyl [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00620NO23G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00620.1NO23G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00620.1.cds1NO23G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00620.1.cds2NO23G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00620.1.cds3NO23G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00620.1.cds4NO23G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00620.1 ID=NO23G00620.1|Name=NO23G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ATGACAACGGCCTTCTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAA
CTACACGGAGCGTTTTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCT
TCCAAGGCTTCCCAGCCCTTGCCCCTTTATACATGGACTGGGAGAAGAAT
TACAATGCGGAGAAGGTCTTTTGGTTCATTATCGACAACTCGTGGATTCC
CTGGTTCTCGCTCTGCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCC
TGGCCAAACGCTACAATATCGGCTACATCTCCGCTCGGACACAGATGGCC
TGCTGGAATTTCTTGCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGT
GGTACCTCACTTTTTTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTGT
TGTGCGGGGCACCGGAGCCGCTGTATGGCGACGGTGCTGTCGGATTCTGG
ATCCAGGCGTTTGTCTTGAGCAAGGTGGCCGAGCTGCTGGATACGGTCTT
TGTGGTATTGCGGCAAAAAGACCCGATCTTCTTGCATTGGTACCACCATG
TGACCGTGCTGCTCTTCACCTGGTTCACGTACTCGAACGAGAACCCGGGG
ATCATCTTCATCGCCATGAACTACTCGGTGCACGCCGTCATGTACACCTA
CTACTGGCTCGCCATCGTCAAGCGCGTCCCCGACTGGTTCCCCACATGGC
TCATCACTCTCGCGCAGATCGCACAGATGATCGTGGGAGTGTTTGTCGCC
TACAACTACTACCGCGTCTTGTCCTCGGGCGGCTCCTGCGCCGTCTCGAC
GGATCTGCTGTGGGCATGCGCGTTGATGTACTCGACGTACCTCTACTTGT
TTTGTGAGTTTGCTGTCCGCAGGTACATCCTGGGCAGGGGCAACCGGGCA
GTGGCGGCGGGGAAGGGCAAGAAGAAGACCAAGTAG
back to top

protein sequence of NO23G00620.1

>NO23G00620.1-protein ID=NO23G00620.1-protein|Name=NO23G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTTAFFEVLGMYVPSENYTERFYTVRGNEFHQVFQGFPALAPLYMDWEKN
YNAEKVFWFIIDNSWIPWFSLCVYLLFIFGYPALAKRYNIGYISARTQMA
CWNFLLASFSWIGAMRVVPHFFFLLKDVGFEEVLCGAPEPLYGDGAVGFW
IQAFVLSKVAELLDTVFVVLRQKDPIFLHWYHHVTVLLFTWFTYSNENPG
IIFIAMNYSVHAVMYTYYWLAIVKRVPDWFPTWLITLAQIAQMIVGVFVA
YNYYRVLSSGGSCAVSTDLLWACALMYSTYLYLFCEFAVRRYILGRGNRA
VAAGKGKKKTK*
back to top

mRNA from alignment at chr23:251478..253211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00620.1 ID=NO23G00620.1|Name=NO23G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr23:251478..253211- (Nannochloropsis oceanica)
ATGACAACGGCCTTCTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAA
CTACACGGAGCGTTTTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCT
TCCAAGGCTTCCCAGCCCTTGCCCCTTTATACATGGACTGGGAGAAGAAT
TACAATGCGGAGAAGGTCTTTTGGTTCATTATCGACAACTCGTGGATTCC
CTGGTTCTCGCTCTGCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCC
TGGCCAAACGCTACAATATCGGCTACATCTCCGCTCGGACACAGATGGCC
TGCTGGAATTTCTTGCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGT
GGTACCTCACTTTTTTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTAG
GGGGGGAAGGAGGGAGGGAGGGGAAAAAGGGAAGGAGGACGATAGGTGGA
TAGAGTACTATTTTGCTTCTAGTTTGGCAGAAAGGTCAGACACTTAAATC
CGGAAGACGAAGAAGCGATAAAATTCTTTTACAATGCTAAATTGTTTGAC
GTCTTGGTCATTCCTTCCCTCCTTCTCCCCTTCCTCCCTCCTCCGCTCCT
CCCCAGGTGTTGTGCGGGGCACCGGAGCCGCTGTATGGCGACGGTGCTGT
CGGATTCTGGATCCAGGCGTTTGTCTTGAGCAAGGTGGCCGAGCTGCTGG
ATACGGTCTTTGTGGTATTGCGGCAAAAAGACCCGATCTTCTTGCATTGG
TACGTGCCCTCCTTCCCTCCCTTTCCTCCCTCTCCCCCTCCCTCTTTCCT
GCACCAACCCACGGCGTTTGCTTGTCGTTGGGTTGCGGGAAAGTCTGAGA
ATGTCCTCACATTGGCATGTGGGAGGGGGGAAAGAGAGAAAAAGAGAAAG
AGATCGACGGAGGGAGGGAAACTGGACCGGCTAAAAGGGACCGGGTAAAG
GGGGCGGAGAAACACCAAGGAGAGGTCTTTCTCACTCATTCGTCCCTGCC
TATCGACACTCCCCCCCCGCATTCCCTAGGTACCACCATGTGACCGTGCT
GCTCTTCACCTGGTTCACGTACTCGAACGAGAACCCGGGGATCATCTTCA
TCGCCATGAACTACTCGGTGCACGCCGTCATGTACACCTACTACTGGCTC
GCCATCGTCAAGCGCGTCCCCGACTGGTTCCCCACATGGCTCATCACTCT
CGCGCAGATCGCACAGATGGTACGTCTCCCGCTCCCTCTCTGCTTCTCTC
CCTCCCTTTCCTGCTCCCCCACACCTTATTTGCTCAATCGAAGCGCCCTC
CTCAGGCGGTGCCGTGCCACGGCAATGTCGAGGACGGTGTCAGTGGGGCG
GTGTTAGTCATGTATAGAGCTGTAGGAATACCTTAATGGCTTCCTTGCTC
GGTAGGACTACCCCAAGGGCTCTGTTTGTCGCCTTGGACGCGACAGGGGC
TCTGGCCTAGTGACATGTGCTCACCCCTCCTTCCCTCTCTCCCCCCTTCC
TCCCTCTTTCCCTCCGTCGCCGCCTAGATCGTGGGAGTGTTTGTCGCCTA
CAACTACTACCGCGTCTTGTCCTCGGGCGGCTCCTGCGCCGTCTCGACGG
ATCTGCTGTGGGCATGCGCGTTGATGTACTCGACGTACCTCTACTTGTTT
TGTGAGTTTGCTGTCCGCAGGTACATCCTGGGCAGGGGCAACCGGGCAGT
GGCGGCGGGGAAGGGCAAGAAGAAGACCAAGTAG
back to top

Coding sequence (CDS) from alignment at chr23:251478..253211-

>NO23G00620.1 ID=NO23G00620.1|Name=NO23G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr23:251478..253211- (Nannochloropsis oceanica)
ATGACAACGGCCTTCTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAA
CTACACGGAGCGTTTTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCT
TCCAAGGCTTCCCAGCCCTTGCCCCTTTATACATGGACTGGGAGAAGAAT
TACAATGCGGAGAAGGTCTTTTGGTTCATTATCGACAACTCGTGGATTCC
CTGGTTCTCGCTCTGCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCC
TGGCCAAACGCTACAATATCGGCTACATCTCCGCTCGGACACAGATGGCC
TGCTGGAATTTCTTGCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGT
GGTACCTCACTTTTTTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTGT
TGTGCGGGGCACCGGAGCCGCTGTATGGCGACGGTGCTGTCGGATTCTGG
ATCCAGGCGTTTGTCTTGAGCAAGGTGGCCGAGCTGCTGGATACGGTCTT
TGTGGTATTGCGGCAAAAAGACCCGATCTTCTTGCATTGGTACCACCATG
TGACCGTGCTGCTCTTCACCTGGTTCACGTACTCGAACGAGAACCCGGGG
ATCATCTTCATCGCCATGAACTACTCGGTGCACGCCGTCATGTACACCTA
CTACTGGCTCGCCATCGTCAAGCGCGTCCCCGACTGGTTCCCCACATGGC
TCATCACTCTCGCGCAGATCGCACAGATGATCGTGGGAGTGTTTGTCGCC
TACAACTACTACCGCGTCTTGTCCTCGGGCGGCTCCTGCGCCGTCTCGAC
GGATCTGCTGTGGGCATGCGCGTTGATGTACTCGACGTACCTCTACTTGT
TTTGTGAGTTTGCTGTCCGCAGGTACATCCTGGGCAGGGGCAACCGGGCA
GTGGCGGCGGGGAAGGGCAAGAAGAAGACCAAGTAG
back to top
Synonyms
Publications