NO23G00600.1, NO23G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00600.1
Unique NameNO23G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr23:243569..246754 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:243569..246754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G00600.1 vs.
Match: CBN79579.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 541.6 bits (1394), Expect = 2.500e-150
Identity = 273/458 (59.61%), Postives = 345/458 (75.33%), Query Frame = 0 
Query:   17 GTAGSARHHPLLRAASKQVHLQQQSQGFASAEPSTPHYDDVPPVTFEDVSTAMFRIRNGIIRTPCYKSHFLSDLCKTKLFFKTEYSQFTGSFKERGARNALLLLTDEEKKRGVMAASAGNHALALSWHGAQLGIPVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDYALSNPDYQGVKYINGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTLRPECKVIGVEPKNCRSFQAALDHGKPVVADVAGTLADGLAVPMVGATAFDVARRYTDDVVFVDEKMIALAMLRLLENERSVVEGGGATGLAALLPGGPLDLPEYKDKNVVVLLCGGNIDITMLGRVIDRGLAADNRLIRFIATVSDRPGGIAGLTKDIAACGASIKDIIHERSWLYHSVDKVNVKCIVETMGREHSEQLRQSLLAAGYDLAW-DLTAMGKTVTE 474
            G+A + +      AA+K+   + ++      +P+ P      PV+F DVS AM RIR+GI+R+   +SHFLSDLC  +++ K E+SQFTGSFKERGARNAL+ L +EE+KRGV+AASAGNHALAL+WHG QLGIPV+V MP +APL KV+KC+ FG NV+  GQHI EAKD+A S P ++G++YINGYDD EIVAGAGT+G+E+LEQ+  VDY++VPVGGAGL+AG++LA KTL+PE KV+GVEP  C S  AAL  GKPV A+   TLADGLAVP VG  AF VA+ + D V  V EK IAL++LRLLE E+ VVEGGGA+GLAA+LPGGPLD+P  K K VV+ LCGGNID+ +LGRVIDRGLAAD RL+RF+ TVSDRPGGIA L   I+  G SI+DI HER+WL+ ++D+V +K +VET G  H E L ++L A GYD+ W D T  G +  E
Sbjct:   35 GSAATPKSEAAAAAAAKKEDAKPKAAEPDKPQPTPPDL----PVSFLDVSKAMHRIRDGIVRSDMKRSHFLSDLCGMEVYLKQEFSQFTGSFKERGARNALMCLDEEERKRGVIAASAGNHALALAWHGTQLGIPVTVVMPTIAPLTKVNKCKAFGVNVVQFGQHILEAKDHATSAPQFKGMRYINGYDDVEIVAGAGTMGMEILEQVPDVDYIVVPVGGAGLIAGIALATKTLQPEVKVLGVEPHFCPSLTAALKAGKPVHAETTATLADGLAVPTVGGQAFKVAQAHVDGVSLVSEKYIALSVLRLLEMEKFVVEGGGASGLAAILPGGPLDIPGLKGKKVVIPLCGGNIDVPVLGRVIDRGLAADMRLVRFVTTVSDRPGGIAELAASISQAGGSIRDIYHERAWLHSNMDQVQIKVVVETFGEAHRESLHKALEAKGYDMNWGDDTEGGASAKE 488
The following BLAST results are available for this feature:
BLAST of NO23G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79579.12.500e-15059.61conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00600NO23G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00600.1NO23G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00600.1.cds1NO23G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds2NO23G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds3NO23G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds4NO23G00600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds5NO23G00600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds6NO23G00600.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds7NO23G00600.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds8NO23G00600.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00600.1.cds9NO23G00600.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00600.1 ID=NO23G00600.1|Name=NO23G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ATGCTGAACTTCCTCCCCCGTCTGGTAGGGAGCCTTAGGAACGCTAGTGG
CACTGCTGGCAGCGCGCGGCATCACCCCTTGCTTCGTGCTGCTTCCAAAC
AGGTGCATTTGCAGCAGCAGTCGCAGGGATTTGCGTCGGCTGAGCCCTCC
ACCCCGCACTATGACGATGTGCCGCCTGTCACCTTCGAAGACGTCTCCAC
GGCCATGTTCCGCATACGCAATGGCATCATTCGCACTCCCTGCTACAAGT
CGCACTTCCTCTCGGACCTGTGCAAGACGAAGCTCTTCTTCAAGACGGAG
TACTCCCAATTCACCGGCAGCTTCAAGGAGCGTGGCGCCCGTAACGCTCT
CCTCCTCTTGACCGATGAAGAGAAAAAACGCGGCGTGATGGCAGCCTCTG
CCGGCAACCACGCCCTCGCCTTGTCCTGGCACGGGGCCCAGCTCGGCATC
CCTGTCTCAGTATTCATGCCAGTCGTGGCCCCGCTGGCCAAGGTGGACAA
GTGCCGCAAATTTGGCGCCAACGTCATCATCACCGGCCAGCACATCGGGG
AAGCCAAGGACTACGCTCTCTCCAACCCTGACTACCAGGGCGTCAAGTAC
ATCAATGGCTACGACGACCCGGAGATTGTGGCGGGTGCCGGTACCATTGG
TATAGAGGTATTGGAGCAGATTTCCAAGGTGGACTATGTGATCGTCCCTG
TGGGTGGGGCGGGCCTCCTGGCAGGCGTGTCCCTGGCCATCAAGACTCTG
CGGCCCGAATGCAAGGTGATCGGCGTGGAACCTAAGAATTGTCGCTCCTT
CCAAGCCGCCCTCGACCATGGGAAGCCGGTCGTCGCCGACGTTGCCGGCA
CGCTCGCGGACGGCCTGGCCGTGCCCATGGTGGGGGCCACGGCCTTCGAC
GTGGCGCGGCGGTACACGGACGACGTGGTGTTCGTGGACGAGAAGATGAT
CGCCCTGGCCATGCTCCGCCTCCTCGAGAATGAGCGCAGCGTCGTGGAGG
GGGGGGGGGCAACCGGGCTGGCTGCCTTGCTCCCTGGGGGTCCACTGGAC
CTGCCGGAATACAAGGACAAAAATGTGGTGGTGCTGCTCTGTGGAGGGAA
TATCGACATCACCATGCTGGGCCGGGTCATCGATCGAGGGCTGGCTGCCG
ACAATCGCCTCATCCGCTTCATTGCTACCGTGTCCGATCGACCTGGGGGC
ATCGCTGGTCTCACCAAGGACATTGCTGCCTGCGGAGCTTCGATCAAAGA
CATCATCCACGAGCGCTCCTGGCTCTACCATTCTGTGGACAAGGTCAACG
TGAAGTGCATCGTGGAGACCATGGGGAGGGAGCACTCGGAGCAGCTGCGG
CAGTCATTGTTGGCCGCCGGGTACGACCTTGCGTGGGACCTGACAGCGAT
GGGGAAAACCGTGACGGAGGATGACAGGGAAAACTAA
back to top

protein sequence of NO23G00600.1

>NO23G00600.1-protein ID=NO23G00600.1-protein|Name=NO23G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MLNFLPRLVGSLRNASGTAGSARHHPLLRAASKQVHLQQQSQGFASAEPS
TPHYDDVPPVTFEDVSTAMFRIRNGIIRTPCYKSHFLSDLCKTKLFFKTE
YSQFTGSFKERGARNALLLLTDEEKKRGVMAASAGNHALALSWHGAQLGI
PVSVFMPVVAPLAKVDKCRKFGANVIITGQHIGEAKDYALSNPDYQGVKY
INGYDDPEIVAGAGTIGIEVLEQISKVDYVIVPVGGAGLLAGVSLAIKTL
RPECKVIGVEPKNCRSFQAALDHGKPVVADVAGTLADGLAVPMVGATAFD
VARRYTDDVVFVDEKMIALAMLRLLENERSVVEGGGATGLAALLPGGPLD
LPEYKDKNVVVLLCGGNIDITMLGRVIDRGLAADNRLIRFIATVSDRPGG
IAGLTKDIAACGASIKDIIHERSWLYHSVDKVNVKCIVETMGREHSEQLR
QSLLAAGYDLAWDLTAMGKTVTEDDREN*
back to top

mRNA from alignment at chr23:243569..246754+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00600.1 ID=NO23G00600.1|Name=NO23G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3186bp|location=Sequence derived from alignment at chr23:243569..246754+ (Nannochloropsis oceanica)
ATGCTGAACTTCCTCCCCCGTCTGGTAGGGAGCCTTAGGAACGCTAGTGG
CACTGCTGGCAGCGCGCGGCATCACCCCTTGCTTCGTGCTGCTTCCAAAC
AGGTGCATTTGCAGCAGCAGTCGCAGGGATTTGCGTCGGCTGAGGTAAGG
GTGGGAGAGAAGAAAAGTAAAAAAAATTGGCCCGGCACACAGCTTCTACC
TCTGCTTGTCGACACCGGGCGTTTCAGATGTTAATCATCATTCATCATTG
GAACAACAACAGCCCTCCACCCCGCACTATGACGATGTGCCGCCTGTCAC
CTTCGAAGACGTCTCCACGGCCATGTTCCGCATACGCAATGGCATCATTC
GCACTCCCTGCTACAAGGTAACTACCGTTGCCCTCCCGTAATCTCACCCC
CCCCGATCCTTCCATTCTTAATTGCCTTGACCGCGGACGACATTTGACAC
TCCAACTCGTCCTTGTAAAAACATGCTTATGCGGCTTTCTTATTTTTACA
TTACTCAAACCCCTCCTTCGTCACGCCAGTCGCACTTCCTCTCGGACCTG
TGCAAGACGAAGCTCTTCTTCAAGACGGAGTACTCCCAATTCACCGGCAG
CTTCAAGGAGCGTGGCGCCCGTAACGCTCTCCTCCTCTTGACCGATGAAG
AGGTGCGTCTTTCTTCTGTCATCCTTTCCCTTTTTGATCTTACCTATCGA
CCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAAACCCCATCC
AGAAAAAACGCGGCGTGATGGCAGCCTCTGCCGGCAACCACGCCCTCGCC
TTGTCCTGGCACGGGGCCCAGCTCGGCATCCCTGTCTCAGTATTCATGCC
AGTCGTGGCCCCGCTGGCCAAGGTGGACAAGTGCCGCAAATTTGGCGCCA
ACGTCATCATCACCGGCCAGCACATCGGGGAAGCCAAGGTCCGTGCCCTC
CCTCCCTCCCTTCCTCCATCCCTCCGTCCCTCCCTCCCTCTTCATCTTTT
CCACGATCATGCCCAGCTCGCCAAGCGTGTCGTTTGAACATCCACCCTTA
TCTCTACTTCCCACTACCACCCCACCACCCTTCCTTCCTCCCTCCCTCCC
TGCCTCCCTCTCTCAGGACTACGCTCTCTCCAACCCTGACTACCAGGGCG
TCAAGTACATCAATGGCTACGACGACCCGGAGATTGTGGCGGGTGCCGGT
ACCATTGGTATAGAGGTATTGGAGCAGATTTCCAAGGTACGCCCTCCCTC
CCTCTTTCGATCCCTCCTCCCTTTCTCCCTTCCCTCCTCCCTCCCCTCCA
ACCTCCCTCGAGTAAACCCCCCATCCCTTTCCTCACGCCTTTCTGTAGTC
ATCAAGACGCTGCCGCCTCCCGCCTGAGTATTGCACTTGTTGTATGAGGG
AAGAGTCCCCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCA
CCCTCCCGCCCTCTCACCCCCCCGCCCTCCCCAGGTGGACTATGTGATCG
TCCCTGTGGGTGGGGCGGGCCTCCTGGCAGGCGTGTCCCTGGCCATCAAG
ACTCTGCGGCCCGAATGCAAGGTGATCGGCGTGGAACCTAAGAATTGTCG
CTCCTTCCAAGCCGCCCTCGACCATGGGAAGCCGGTCGTCGCCGACGTTG
CCGGGTAAGGAAAGCAAGACAACAGCCAAAGCTCTCCCCTTTATCCCTCC
TCCCCTCCCCCCCTCGCCTTCGTGAGCTCCAGAGCACTCCGCCATCCCCC
CCCCGGACATGAATGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTGCTCATGTGCTTGCTC
TACCCCCCCCCGAGGCCTCTTTCACTCGTCCCAAGCCGTATCATTCGATG
AAGCAGTCCGGAACAATAATTGCCCATACCCGCACCCCTCCCTCACTATC
CCTCGTCCCCCACCTCCTTCTTCATTCGTCTTGTCATGGGTCCACGCAAT
CCACCCACAGCACGCTCGCGGACGGCCTGGCCGTGCCCATGGTGGGGGCC
ACGGCCTTCGACGTGGCGCGGCGGTACACGGACGACGTGGTGTTCGTGGA
CGAGAAGATGATCGCCCTGGCCATGCTCCGCCTCCTCGAGAATGAGCGCA
GCGTCGTGGAGGGGGGGGGGGCAACCGGGCTGGCTGCCTTGCTCCCTGGG
GGTCCACTGGACCTGCCGGAATACAAGGACAAAAATGTGGTGGTGCTGCT
CTGTGGAGGGAATATCGGTAAGAAACAGGGAGGGAGGGTGTACGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAGGTAAT
GGTTTGGTCAAACTCAATCTCACAGCGGCGAATGTCAGTTCACACTCCTT
CTTCCCCCCTCTTTTCCTCCCTTTCTCCATCTCTCCCTTCCTCCCTTTCA
TCCTGTCTCGGTCTGCCTCCCTCCCTCCCTCCCTCCAGACATCACCATGC
TGGGCCGGGTCATCGATCGAGGGCTGGCTGCCGACAATCGCCTCATCCGC
TTCATTGCTACCGTGTCCGATCGACCTGGGGGCATCGCTGGTCTCACCAA
GGTATGTCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCCTCTCCCTCTCTCGATGT
GCTGGCGTGGCGCTCGAAGGCCCGGCCTGCTCCAGGTACCTGGTCAACGG
AAAACCTCCCTCCCTCCCTCCCCGGGACGTCGCTTGTTTGAAAGGCATAT
ACGTATGGGCCATCCCGCACTCTCTTCTAGGCATGAGACTGATGCCTCTC
CTTCACCGGCGCTCGGAGCAAGGATGGCAGTCGCGGGCCTTGGCTGGCTC
GACCATCTCTTGAATTCCTTTAAATCTCCCTCCCTCCCTCCCTCCCTCCC
TTTCTCCTTCCTTCCAGGACATTGCTGCCTGCGGAGCTTCGATCAAAGAC
ATCATCCACGAGCGCTCCTGGCTCTACCATTCTGTGGACAAGGTCAACGT
GAAGTGCATCGTGGAGACCATGGGGAGGGAGCACTCGGAGCAGCTGCGGC
AGTCATTGTTGGCCGCCGGGTACGACCTTGCGTGGGACCTGACAGCGATG
GGGAAAACCGTGACGGAGGATGACAGGGAAAACTAA
back to top

Coding sequence (CDS) from alignment at chr23:243569..246754+

>NO23G00600.1 ID=NO23G00600.1|Name=NO23G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr23:243569..246754+ (Nannochloropsis oceanica)
ATGCTGAACTTCCTCCCCCGTCTGGTAGGGAGCCTTAGGAACGCTAGTGG
CACTGCTGGCAGCGCGCGGCATCACCCCTTGCTTCGTGCTGCTTCCAAAC
AGGTGCATTTGCAGCAGCAGTCGCAGGGATTTGCGTCGGCTGAGCCCTCC
ACCCCGCACTATGACGATGTGCCGCCTGTCACCTTCGAAGACGTCTCCAC
GGCCATGTTCCGCATACGCAATGGCATCATTCGCACTCCCTGCTACAAGT
CGCACTTCCTCTCGGACCTGTGCAAGACGAAGCTCTTCTTCAAGACGGAG
TACTCCCAATTCACCGGCAGCTTCAAGGAGCGTGGCGCCCGTAACGCTCT
CCTCCTCTTGACCGATGAAGAGAAAAAACGCGGCGTGATGGCAGCCTCTG
CCGGCAACCACGCCCTCGCCTTGTCCTGGCACGGGGCCCAGCTCGGCATC
CCTGTCTCAGTATTCATGCCAGTCGTGGCCCCGCTGGCCAAGGTGGACAA
GTGCCGCAAATTTGGCGCCAACGTCATCATCACCGGCCAGCACATCGGGG
AAGCCAAGGACTACGCTCTCTCCAACCCTGACTACCAGGGCGTCAAGTAC
ATCAATGGCTACGACGACCCGGAGATTGTGGCGGGTGCCGGTACCATTGG
TATAGAGGTATTGGAGCAGATTTCCAAGGTGGACTATGTGATCGTCCCTG
TGGGTGGGGCGGGCCTCCTGGCAGGCGTGTCCCTGGCCATCAAGACTCTG
CGGCCCGAATGCAAGGTGATCGGCGTGGAACCTAAGAATTGTCGCTCCTT
CCAAGCCGCCCTCGACCATGGGAAGCCGGTCGTCGCCGACGTTGCCGGCA
CGCTCGCGGACGGCCTGGCCGTGCCCATGGTGGGGGCCACGGCCTTCGAC
GTGGCGCGGCGGTACACGGACGACGTGGTGTTCGTGGACGAGAAGATGAT
CGCCCTGGCCATGCTCCGCCTCCTCGAGAATGAGCGCAGCGTCGTGGAGG
GGGGGGGGGCAACCGGGCTGGCTGCCTTGCTCCCTGGGGGTCCACTGGAC
CTGCCGGAATACAAGGACAAAAATGTGGTGGTGCTGCTCTGTGGAGGGAA
TATCGACATCACCATGCTGGGCCGGGTCATCGATCGAGGGCTGGCTGCCG
ACAATCGCCTCATCCGCTTCATTGCTACCGTGTCCGATCGACCTGGGGGC
ATCGCTGGTCTCACCAAGGACATTGCTGCCTGCGGAGCTTCGATCAAAGA
CATCATCCACGAGCGCTCCTGGCTCTACCATTCTGTGGACAAGGTCAACG
TGAAGTGCATCGTGGAGACCATGGGGAGGGAGCACTCGGAGCAGCTGCGG
CAGTCATTGTTGGCCGCCGGGTACGACCTTGCGTGGGACCTGACAGCGAT
GGGGAAAACCGTGACGGAGGATGACAGGGAAAACTAA
back to top
Synonyms
Publications