NO23G00500.1, NO23G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00500.1
Unique NameNO23G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr23:215097..216341 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:215097..216341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G00500.1 vs.
Match: EWM22984.1 (glycoside hydrolase 15-like protein [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 6.000e-76
Identity = 191/374 (51.07%), Postives = 235/374 (62.83%), Query Frame = 0 
Query:    1 MLTGFLSLFPGSPSSPNRRVLNDPSSFPPFI---------PPSPSSSSASSKDITITTLAQDLRKETRRWQSLFLSADGKTMDYSSLLQSEAFVSYLHLTTLLASAQGIASLSLNERKATFLNLYNCLVIHAIALDSSPAPSTFSSSSSSSSSSSSSSSSSSSSSSALSRTPFFAQTCYNVSGHILSLDDMEHGLLRGNRRSPNFLARRALFSKRHFPDLPSLPPSSTSSSSS------------------PSSATTSSSLASWIVPLDPRIHFALNCGAISCPAIRFYEGGKEGRGVSGKVEGRGGGSEGGRDSSAGGKTQGLLRLMEGGMEGGQ--DRLDEQLDAAARTFFAGVCVEREGGREGGRERGRVV 346
            ML GFLS+ P S     +RVLNDP++FPP +         PPSP +SS ++    ++ L QDLR+ +R  Q  FLS +GK +DY SLL SEAF SYL +TT LA+  G+ +LS +ERKATFLNLYNCLVIHA+ LDS+  PS                      SS+ SRT F+A+TCY V GHILSLDD+E+GLLRGNRRSPN LAR ++FS +HFP+LP LPP S+  SSS                  P+S ++  SLA WIVPLD RIHFALNCGA SCPAIR+YE G EG        GR GG EGGR +       G+L  M+GG +GG+   +L++QL+AAAR FF G      GGREGGRE  R V
Sbjct:   10 MLGGFLSILPASGP---KRVLNDPNTFPPALVPSSSFASFPPSPPTSSTNN----VSLLIQDLRRRSRSMQGAFLSPNGKHVDYPSLLTSEAFASYLQMTTHLATLTGVGALSPDERKATFLNLYNCLVIHALTLDSARPPS----------------------SSSWSRTSFYARTCYCVGGHILSLDDLENGLLRGNRRSPNPLARPSIFSAKHFPNLPILPPLSSFPSSSTFPPTNAPTDAPDAPSYPPASPSSPESLADWIVPLDARIHFALNCGANSCPAIRYYEAGGEG--------GREGGKEGGRPA-------GILETMQGGGKGGEGGGKLEQQLEAAARAFFCGY-AGGGGGREGGREGERKV 338
The following BLAST results are available for this feature:
BLAST of NO23G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22984.16.000e-7651.07glycoside hydrolase 15-like protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00500NO23G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00500.1NO23G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00500.1.cds1NO23G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00500.1 ID=NO23G00500.1|Name=NO23G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGCTCACCGGCTTCCTCTCCCTCTTCCCCGGCAGCCCCTCGAGCCCTAA
CCGGCGCGTTCTTAACGACCCGAGCTCCTTCCCTCCCTTCATCCCTCCCT
CTCCCTCCTCCTCCTCTGCCTCTTCCAAAGACATCACAATCACCACCCTC
GCCCAGGACCTGCGCAAGGAAACCCGCCGTTGGCAATCCCTCTTCTTGTC
CGCCGACGGCAAGACCATGGATTACTCTTCCTTGCTGCAAAGCGAGGCCT
TCGTCTCCTATCTCCACCTCACCACACTCCTCGCCTCCGCCCAAGGCATT
GCCTCCCTGTCCCTGAATGAGAGAAAGGCCACGTTTTTGAATCTATACAA
TTGCCTGGTCATTCACGCTATCGCCCTTGACTCCTCGCCCGCACCCTCCA
CCTTCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCTTCCGCCCTCTCCCGCACCCCCTTCTTTGCCCA
AACCTGCTACAACGTGAGCGGCCACATCCTCTCCCTCGACGACATGGAGC
ACGGCTTGCTGAGAGGGAACAGACGATCGCCGAACTTCCTTGCCCGTCGC
GCCCTTTTTTCGAAAAGGCATTTCCCGGACTTGCCCTCCCTCCCCCCATC
CTCCACCTCATCATCCTCCTCTCCCTCCTCCGCCACCACCTCATCCTCCC
TCGCCTCCTGGATTGTCCCCTTAGACCCTCGCATCCACTTCGCCTTGAAC
TGTGGCGCGATATCCTGTCCAGCCATTCGGTTTTATGAGGGAGGGAAGGA
GGGAAGGGGGGTGTCAGGGAAAGTAGAAGGAAGGGGAGGAGGAAGTGAGG
GAGGGAGGGATTCAAGTGCTGGAGGTAAGACGCAAGGCCTCTTGAGATTA
ATGGAGGGAGGAATGGAGGGAGGGCAGGATAGGTTGGACGAGCAGCTGGA
TGCCGCGGCCAGGACATTTTTTGCCGGAGTCTGTGTGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAAAGAGGGAGAGTAGTGGTGCACTTGAGCAAG
ATTTGTGATTGGTACAAAAGTGATTTTGCGGAGGGGGAGGAAGGGAGGGG
AGGGGAGGAGGAAAGGATGTTGCGTAGGGTTTTGCAGTGGTTTCCCGAGG
AGGCACGGAGGGAGGTGGAGGGAGGGAGTGGGGGAGGGAGGGAGGTCAAG
GTGGAGTATTTGCCGTATGATTGGGGAGTAAATATGAAGAAGTAA
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protein sequence of NO23G00500.1

>NO23G00500.1-protein ID=NO23G00500.1-protein|Name=NO23G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MLTGFLSLFPGSPSSPNRRVLNDPSSFPPFIPPSPSSSSASSKDITITTL
AQDLRKETRRWQSLFLSADGKTMDYSSLLQSEAFVSYLHLTTLLASAQGI
ASLSLNERKATFLNLYNCLVIHAIALDSSPAPSTFSSSSSSSSSSSSSSS
SSSSSSSALSRTPFFAQTCYNVSGHILSLDDMEHGLLRGNRRSPNFLARR
ALFSKRHFPDLPSLPPSSTSSSSSPSSATTSSSLASWIVPLDPRIHFALN
CGAISCPAIRFYEGGKEGRGVSGKVEGRGGGSEGGRDSSAGGKTQGLLRL
MEGGMEGGQDRLDEQLDAAARTFFAGVCVEREGGREGGRERGRVVVHLSK
ICDWYKSDFAEGEEGRGGEEERMLRRVLQWFPEEARREVEGGSGGGREVK
VEYLPYDWGVNMKK*
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mRNA from alignment at chr23:215097..216341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00500.1 ID=NO23G00500.1|Name=NO23G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at chr23:215097..216341- (Nannochloropsis oceanica)
ATGCTCACCGGCTTCCTCTCCCTCTTCCCCGGCAGCCCCTCGAGCCCTAA
CCGGCGCGTTCTTAACGACCCGAGCTCCTTCCCTCCCTTCATCCCTCCCT
CTCCCTCCTCCTCCTCTGCCTCTTCCAAAGACATCACAATCACCACCCTC
GCCCAGGACCTGCGCAAGGAAACCCGCCGTTGGCAATCCCTCTTCTTGTC
CGCCGACGGCAAGACCATGGATTACTCTTCCTTGCTGCAAAGCGAGGCCT
TCGTCTCCTATCTCCACCTCACCACACTCCTCGCCTCCGCCCAAGGCATT
GCCTCCCTGTCCCTGAATGAGAGAAAGGCCACGTTTTTGAATCTATACAA
TTGCCTGGTCATTCACGCTATCGCCCTTGACTCCTCGCCCGCACCCTCCA
CCTTCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCTTCCGCCCTCTCCCGCACCCCCTTCTTTGCCCA
AACCTGCTACAACGTGAGCGGCCACATCCTCTCCCTCGACGACATGGAGC
ACGGCTTGCTGAGAGGGAACAGACGATCGCCGAACTTCCTTGCCCGTCGC
GCCCTTTTTTCGAAAAGGCATTTCCCGGACTTGCCCTCCCTCCCCCCATC
CTCCACCTCATCATCCTCCTCTCCCTCCTCCGCCACCACCTCATCCTCCC
TCGCCTCCTGGATTGTCCCCTTAGACCCTCGCATCCACTTCGCCTTGAAC
TGTGGCGCGATATCCTGTCCAGCCATTCGGTTTTATGAGGGAGGGAAGGA
GGGAAGGGGGGTGTCAGGGAAAGTAGAAGGAAGGGGAGGAGGAAGTGAGG
GAGGGAGGGATTCAAGTGCTGGAGGTAAGACGCAAGGCCTCTTGAGATTA
ATGGAGGGAGGAATGGAGGGAGGGCAGGATAGGTTGGACGAGCAGCTGGA
TGCCGCGGCCAGGACATTTTTTGCCGGAGTCTGTGTGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAAAGAGGGAGAGTAGTGGTGCACTTGAGCAAG
ATTTGTGATTGGTACAAAAGTGATTTTGCGGAGGGGGAGGAAGGGAGGGG
AGGGGAGGAGGAAAGGATGTTGCGTAGGGTTTTGCAGTGGTTTCCCGAGG
AGGCACGGAGGGAGGTGGAGGGAGGGAGTGGGGGAGGGAGGGAGGTCAAG
GTGGAGTATTTGCCGTATGATTGGGGAGTAAATATGAAGAAGTAA
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Coding sequence (CDS) from alignment at chr23:215097..216341-

>NO23G00500.1 ID=NO23G00500.1|Name=NO23G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr23:215097..216341- (Nannochloropsis oceanica)
ATGCTCACCGGCTTCCTCTCCCTCTTCCCCGGCAGCCCCTCGAGCCCTAA
CCGGCGCGTTCTTAACGACCCGAGCTCCTTCCCTCCCTTCATCCCTCCCT
CTCCCTCCTCCTCCTCTGCCTCTTCCAAAGACATCACAATCACCACCCTC
GCCCAGGACCTGCGCAAGGAAACCCGCCGTTGGCAATCCCTCTTCTTGTC
CGCCGACGGCAAGACCATGGATTACTCTTCCTTGCTGCAAAGCGAGGCCT
TCGTCTCCTATCTCCACCTCACCACACTCCTCGCCTCCGCCCAAGGCATT
GCCTCCCTGTCCCTGAATGAGAGAAAGGCCACGTTTTTGAATCTATACAA
TTGCCTGGTCATTCACGCTATCGCCCTTGACTCCTCGCCCGCACCCTCCA
CCTTCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCC
TCTTCCTCCTCCTCCTCTTCCGCCCTCTCCCGCACCCCCTTCTTTGCCCA
AACCTGCTACAACGTGAGCGGCCACATCCTCTCCCTCGACGACATGGAGC
ACGGCTTGCTGAGAGGGAACAGACGATCGCCGAACTTCCTTGCCCGTCGC
GCCCTTTTTTCGAAAAGGCATTTCCCGGACTTGCCCTCCCTCCCCCCATC
CTCCACCTCATCATCCTCCTCTCCCTCCTCCGCCACCACCTCATCCTCCC
TCGCCTCCTGGATTGTCCCCTTAGACCCTCGCATCCACTTCGCCTTGAAC
TGTGGCGCGATATCCTGTCCAGCCATTCGGTTTTATGAGGGAGGGAAGGA
GGGAAGGGGGGTGTCAGGGAAAGTAGAAGGAAGGGGAGGAGGAAGTGAGG
GAGGGAGGGATTCAAGTGCTGGAGGTAAGACGCAAGGCCTCTTGAGATTA
ATGGAGGGAGGAATGGAGGGAGGGCAGGATAGGTTGGACGAGCAGCTGGA
TGCCGCGGCCAGGACATTTTTTGCCGGAGTCTGTGTGGAGAGAGAGGGAG
GGAGGGAGGGAGGGAGGGAAAGAGGGAGAGTAGTGGTGCACTTGAGCAAG
ATTTGTGATTGGTACAAAAGTGATTTTGCGGAGGGGGAGGAAGGGAGGGG
AGGGGAGGAGGAAAGGATGTTGCGTAGGGTTTTGCAGTGGTTTCCCGAGG
AGGCACGGAGGGAGGTGGAGGGAGGGAGTGGGGGAGGGAGGGAGGTCAAG
GTGGAGTATTTGCCGTATGATTGGGGAGTAAATATGAAGAAGTAA
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Synonyms
Publications