NO23G00470.1, NO23G00470.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00470.1
Unique Name	NO23G00470.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2017
Alignment location	chr23:203508..206271 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:203508..206271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G00470.1 vs.
Match: EWM22988.1 (hypothetical protein Naga_101129g2 [Nannochloropsis gaditana])

HSP 1 Score: 477.2 bits (1227), Expect = 5.400e-131
Identity = 244/319 (76.49%), Postives = 272/319 (85.27%), Query Frame = 0

Query:  122 MHRFPRWSIFLIALLDTLSLVVMVVAGASTPPVLTVLFMQATIPFIILLSSCPPPSFSSSPFSPSITTGRGGGRKTKMFKNEHWQGGGLILLGIAVAMAPTVHAAFWHGHRDIGINTLAYVLCCLPAAFSQLVKERAIIKFSQPMNFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWNTYAMTDLSTAVTDMCLCLFSGQSIPPGRYPIDPQCRFASLATFFYIFSTLLVTFAVNGVLAYGTPLILYRTINSSVALAFVVLALYSMNKWAWITSYALNIFDFLGLFIVLAGMERYHREPEPDTEMLTHFSLSPEEGE 441
            MHRFPR SI LIALLDTLSLVVMVVAGASTPPVLTVLFMQAT+PF++LLSSCPP       F     T +   R+ K F   HWQGGGLILLGI VAMAPTVH AFWH   DIGINTLAYVLCCLPAA SQL KE+AII+F+QP+NFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGW+ Y  TDL TAV+D+CLCLF+ +SIPPGRYPI+P+CR+ASLATF YI  TLLVTFAVNGVLA GTP +LYRTIN SVALAF+ LA+YS+NKWAW++SYALN+FDF+GLF+VLAGME YH +PEPDTEMLT FSL  E+GE
Sbjct:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPS------FPTCFATAKR--REQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSL--EDGE 309

The following BLAST results are available for this feature:

BLAST of NO23G00470.1 vs.

BLAST of NO23G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22988.1	5.400e-131	76.49	hypothetical protein Naga_101129g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00470	NO23G00470	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00470.1	NO23G00470.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00470.1.cds1	NO23G00470.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00470.1.cds2	NO23G00470.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00470.1.cds3	NO23G00470.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00470.1.cds4	NO23G00470.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00470.1.cds5	NO23G00470.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00470.1.cds6	NO23G00470.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:203508..206271-
coding sequence from alignment at chr23:203508..206271-

mRNA sequence

>NO23G00470.1 ID=NO23G00470.1|Name=NO23G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2017bp
AAATCTCGCCCTTGGAGTCCTCCTATGCGTGAGTGTTGGAAGCAAGAATG
GCTGTGAGTGTGACAGTGCACTACCAGGTAAGCTTTACAAGAAAGAGGCG
CAACCGCCAAGGCAGGAGTTCTACAACGCGAATGTGTTCGCCATTCGTGC
AGGCAGTATGGATGATTCCCCTCCGCCCCCCCCAAGTGGGAATGTACGCA
AAGCTCGCTCAAGAAGCACAAGCCAAGGACTTGCAAGAATTGTGCCCAGC
CATTGTCTCACCATTTGCCATCACAAATGCACAGGTTGGGTTCTTTCAGC
GTCTGCCTGCCCTTTCGCAAGCAAGCATTTTTAGGAGAACGCCAGCAGAA
GCATCAGGAAGAACAGGAGCTGGACCATTATTGGAGGGCAGAACGTAATG
CGTGGCGGATAAATTGAACTCAGGTCAAGAAAGCAGGACTAGGACCTGCG
CCACGGGCCTGCGGCAGCGTCAGCAGCAGCAGCAGCAGCAGCTGCAGCAG
TGCGAGAAGTAACCAACTAGCTGCAACAGAGCAGCAGCAGTGTTTTGAGT
AATACTTTAAAAACTGTTCAGGGAAAATGAGGGAATCCAAGTCTCTAGAC
CCTGGCAGCAACCGGCGGGGCAATTACGGGGGCCTCTCAATTGGGATGAC
GCCCTCCCCGCCGTCCGTGATAATCAATGAAGTGGAAATGGCGCGCCAGG
CCCGGAGAAGAAAGAAATGGTGGTGCGGACAGTTGTCCTCCAACTCAGCC
CTAGGTGGCTTTATCTTCCTTGTCGGCCTCGCTGCAGCCGGAGAACGAAT
AGCCTTCAAAGTAGCCATTGATCAAATGGAACCGTTCCGGGTGTTTCTCG
CTCTCTTTGTGAACCTCTCCTTGGTGCTGGTGTCAGGGGTGGTGGTGCTC
TACAAGAAGATGAAACAGCCCTCCGAGATTACGCCTTCCATGCACCGCTT
TCCCCGCTGGTCCATCTTTCTCATCGCGCTTCTCGATACCTTGTCACTCG
TCGTTATGGTGGTCGCCGGCGCCTCCACTCCTCCAGTTCTCACCGTCCTC
TTCATGCAAGCCACCATTCCCTTTATCATCCTCCTCTCCTCCTGCCCTCC
TCCCTCCTTCTCTTCCTCCCCCTTTTCCCCTTCTATTACAACGGGGAGGG
GGGGGGGGAGGAAGACCAAGATGTTCAAGAATGAGCACTGGCAAGGAGGA
GGGCTTATTTTGTTGGGGATTGCGGTGGCTATGGCCCCGACCGTCCACGC
GGCGTTTTGGCACGGACATCGGGATATTGGCATCAACACCCTTGCCTATG
TCCTCTGCTGCCTCCCTGCCGCATTTTCCCAGTTGGTCAAAGAGCGGGCC
ATCATCAAGTTCTCCCAGCCTATGAACTTTTACTACCTAAATTTGCTGCT
AGGCATCTATCAATTTGTGTTGCTTTTGGTCTTGTCCCCACTCACCTACA
GGCTCCAGGGCCTGGGGATGGGCTGGAATACATACGCCATGACTGACTTG
AGCACCGCTGTGACGGATATGTGCCTGTGTCTTTTTTCCGGTCAATCCAT
TCCTCCGGGTCGCTATCCCATTGACCCCCAATGCCGCTTTGCATCCTTGG
CGACATTTTTCTACATCTTTTCCACGCTTCTCGTGACCTTTGCGGTGAAC
GGCGTGCTTGCCTACGGGACCCCTTTAATTTTGTACCGGACCATCAATTC
GTCTGTTGCCTTGGCCTTTGTGGTGCTTGCGCTCTATTCCATGAACAAAT
GGGCGTGGATTACCTCGTATGCTCTCAACATATTTGATTTCTTGGGTCTC
TTCATTGTCCTCGCAGGAATGGAGCGGTACCACAGGGAGCCGGAGCCAGA
TACAGAAATGTTGACGCACTTTTCGTTGTCGCCGGAAGAAGGGGAAGAGG
GCGAGGAGGAAGAGGTGTTCTAGACGAGAGAAAGACAAAAAGTGGATGGA
TGTAGATAAATTTATCGATAACGTGAAAGAACACACGCAAAGGAACTTAT
GAAATTGAGACAAACGA

protein sequence of NO23G00470.1

>NO23G00470.1-protein ID=NO23G00470.1-protein|Name=NO23G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MRESKSLDPGSNRRGNYGGLSIGMTPSPPSVIINEVEMARQARRRKKWWC
GQLSSNSALGGFIFLVGLAAAGERIAFKVAIDQMEPFRVFLALFVNLSLV
LVSGVVVLYKKMKQPSEITPSMHRFPRWSIFLIALLDTLSLVVMVVAGAS
TPPVLTVLFMQATIPFIILLSSCPPPSFSSSPFSPSITTGRGGGRKTKMF
KNEHWQGGGLILLGIAVAMAPTVHAAFWHGHRDIGINTLAYVLCCLPAAF
SQLVKERAIIKFSQPMNFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGW
NTYAMTDLSTAVTDMCLCLFSGQSIPPGRYPIDPQCRFASLATFFYIFST
LLVTFAVNGVLAYGTPLILYRTINSSVALAFVVLALYSMNKWAWITSYAL
NIFDFLGLFIVLAGMERYHREPEPDTEMLTHFSLSPEEGEEGEEEEVF*

mRNA from alignment at chr23:203508..206271-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00470.1 ID=NO23G00470.1|Name=NO23G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp|location=Sequence derived from alignment at chr23:203508..206271- (Nannochloropsis oceanica)
AAATCTCGCCCTTGGAGTCCTCCTATGCGTGAGTGTTGGAAGCAAGAATG
GCTGTGAGTGTGACAGTGCACTACCAGGTAAGCTTTACAAGAAAGAGGCG
CAACCGCCAAGGCAGGAGTTCTACAACGCGAATGTGTTCGCCATTCGTGC
AGGCAGTATGGATGATTCCCCTCCGCCCCCCCCAAGTGGGAATGTACGCA
AAGCTCGCTCAAGAAGCACAAGCCAAGGACTTGCAAGAATTGTGCCCAGC
CATTGTCTCACCATTTGCCATCACAAATGCACAGGTTGGGTTCTTTCAGC
GTCTGCCTGCCCTTTCGCAAGCAAGCATTTTTAGGAGAACGCCAGCAGAA
GCATCAGGAAGAACAGGAGCTGGACCATTATTGGAGGGCAGAACGTAATG
CGTGGCGGATAAATTGAACTCAGGTCAAGAAAGCAGGACTAGGACCTGCG
CCACGGGCCTGCGGCAGCGTCAGCAGCAGCAGCAGCAGCAGCTGCAGCAG
TGCGAGAAGTAACCAACTAGCTGCAACAGAGCAGCAGCAGTGTTTTGAGT
AATACTTTAAAAACTGTTCAGGGAAAATGAGGGAATCCAAGTCTCTAGAC
CCTGGCAGCAACCGGCGGGGCAATTACGGGGGCCTCTCAATTGGGTGAGA
AATGAGGGAGAAAGGGAGGGAAGGAGGGCGGGAGAGAGGGAGGAAGGGAT
GAGGGTATGCATGACGTAGCTAGACAATTGAGATGATGCAGATTGGAAAC
TCTCCATCCAGAGAATCGCTCATCTGCTCTCAACATCCCATTCTTGGTCT
TTGGCTTTCGTTCACATACACAACGCAGGATGACGCCCTCCCCGCCGTCC
GTGATAATCAATGAAGTGGAAATGGCGCGCCAGGCCCGGAGAAGAAAGGT
AGGTGATATGGTAACAGGCGCTGCACATTGATACTCCGATATAGGTAGGA
ATTTATTCATTACCTTTTTCCCTCCCTCCATTTCTTTTTCCTTTCATCCA
TCTTGTAGAAATGGTGGTGCGGACAGTTGTCCTCCAACTCAGCCCTAGGT
GGCTTTATCTTCCTTGTCGGCCTCGCTGCAGCCGGAGAACGAATAGCCTT
CAAAGTAGCCATTGATCAAATGGAACCGTTCCGGGTGTTTCTCGCTCTCT
TTGTGAACCTCTCCTTGGTGCTGGTGTCAGGGGTGGTGGTGCTCTACAAG
AAGATGAAACAGCCCTCCGGTAGGAGCCTCCATTTTTTTTTCCCGTCCTC
CCTCCCTCCTTCCCTCTCCTTGCTCACCGCCTTTTGCTCTTGAAAGGTCT
CGGGAGAGGGATTACGAAAACAACTCTCATCGCTCCCCCTTCCCTCCATC
CCTCCCTCCTTCCCCCCCTCCACCCCCAGAGATTACGCCTTCCATGCACC
GCTTTCCCCGCTGGTCCATCTTTCTCATCGCGCTTCTCGATACCTTGTCA
CTCGTCGTTATGGTGGTCGCCGGCGCCTCCACTCCTCCAGTTCTCACCGT
CCTCTTCATGCAAGCCACCATTCCCTTTATCATCCTCCTCTCCTCCTGCC
CTCCTCCCTCCTTCTCTTCCTCCCCCTTTTCCCCTTCTATTACAACGGGG
AGGGGGGGGGGGAGGAAGACCAAGATGTTCAAGAATGAGCACTGGCAAGG
AGGAGGGCTTATTTTGTTGGGGATTGCGGTGGCTATGGCCCCGACCGTCC
ACGCGGCGTTTTGGCACGGACATCGGGATATTGGTAACGATGGAGGGAGG
GAGCGGGAGGGCTGCTTTCCTACTGAATGAATACCTCATATCCCCTGTAA
GACATACGCAATTATAAGAATTTTCTGAATTATCAATCAATCTCAATTCC
TTTTCTCTCACTTGTAGGCATCAACACCCTTGCCTATGTCCTCTGCTGCC
TCCCTGCCGCATTTTCCCAGTTGGTCAAAGAGCGGGCCATCATCAAGTTC
TCCCAGCCTATGAACTTTTACTACCTAAATTTGCTGCTAGGCATCTATCA
ATTTGTGTTGCTTTTGGTCTTGTCCCCACTCACCTACAGGCTCCAGGTAG
GGACAGAGGGAGGGACGGTGGGAGAGAAGGGAGGGAGAAGATTGCGAGCA
AGGAGGAAATGACGTGATTTTTTTCCTTTTATTTATTATATGTGGTGTAG
TTAGCCGCTTTATCTAAGAATGACTCTCATCGAAAATCAATAATGCCCCA
TACAGGGCCTGGGGATGGGCTGGAATACATACGCCATGACTGACTTGAGC
ACCGCTGTGACGGATATGTGCCTGTGTCTTTTTTCCGGTCAATCCATTCC
TCCGGGTCGCTATCCCATTGACCCCCAATGCCGCTTTGCATCCTTGGCGA
CATTTTTCTACATCTTTTCCACGCTTCTCGTGACCTTTGCGGTGAACGGC
GTGCTTGCCTACGGGACCCCTTTAATTTTGTACCGGACCATCAATTCGTC
TGTTGCCTTGGCCTTTGTGGTGCTTGCGCTCTATTCCATGAACAAATGGG
CGTGGATTACCTCGTATGCTCTCAACATATTTGATTTCTTGGGTCTCTTC
ATTGTCCTCGCAGGAATGGAGCGGTACCACAGGGAGCCGGAGCCAGATAC
AGAAATGTTGACGCACTTTTCGTTGTCGCCGGAAGAAGGGGAAGAGGGCG
AGGAGGAAGAGGTGTTCTAGACGAGAGAAAGACAAAAAGTGGATGGATGT
AGATAAATTTATCGATAACGTGAAAGAACACACGCAAAGGAACTTATGAA
ATTGAGACAAACGA

Coding sequence (CDS) from alignment at chr23:203508..206271-

>NO23G00470.1 ID=NO23G00470.1|Name=NO23G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr23:203508..206271- (Nannochloropsis oceanica)
ATGAGGGAATCCAAGTCTCTAGACCCTGGCAGCAACCGGCGGGGCAATTA
CGGGGGCCTCTCAATTGGGATGACGCCCTCCCCGCCGTCCGTGATAATCA
ATGAAGTGGAAATGGCGCGCCAGGCCCGGAGAAGAAAGAAATGGTGGTGC
GGACAGTTGTCCTCCAACTCAGCCCTAGGTGGCTTTATCTTCCTTGTCGG
CCTCGCTGCAGCCGGAGAACGAATAGCCTTCAAAGTAGCCATTGATCAAA
TGGAACCGTTCCGGGTGTTTCTCGCTCTCTTTGTGAACCTCTCCTTGGTG
CTGGTGTCAGGGGTGGTGGTGCTCTACAAGAAGATGAAACAGCCCTCCGA
GATTACGCCTTCCATGCACCGCTTTCCCCGCTGGTCCATCTTTCTCATCG
CGCTTCTCGATACCTTGTCACTCGTCGTTATGGTGGTCGCCGGCGCCTCC
ACTCCTCCAGTTCTCACCGTCCTCTTCATGCAAGCCACCATTCCCTTTAT
CATCCTCCTCTCCTCCTGCCCTCCTCCCTCCTTCTCTTCCTCCCCCTTTT
CCCCTTCTATTACAACGGGGAGGGGGGGGGGGAGGAAGACCAAGATGTTC
AAGAATGAGCACTGGCAAGGAGGAGGGCTTATTTTGTTGGGGATTGCGGT
GGCTATGGCCCCGACCGTCCACGCGGCGTTTTGGCACGGACATCGGGATA
TTGGCATCAACACCCTTGCCTATGTCCTCTGCTGCCTCCCTGCCGCATTT
TCCCAGTTGGTCAAAGAGCGGGCCATCATCAAGTTCTCCCAGCCTATGAA
CTTTTACTACCTAAATTTGCTGCTAGGCATCTATCAATTTGTGTTGCTTT
TGGTCTTGTCCCCACTCACCTACAGGCTCCAGGGCCTGGGGATGGGCTGG
AATACATACGCCATGACTGACTTGAGCACCGCTGTGACGGATATGTGCCT
GTGTCTTTTTTCCGGTCAATCCATTCCTCCGGGTCGCTATCCCATTGACC
CCCAATGCCGCTTTGCATCCTTGGCGACATTTTTCTACATCTTTTCCACG
CTTCTCGTGACCTTTGCGGTGAACGGCGTGCTTGCCTACGGGACCCCTTT
AATTTTGTACCGGACCATCAATTCGTCTGTTGCCTTGGCCTTTGTGGTGC
TTGCGCTCTATTCCATGAACAAATGGGCGTGGATTACCTCGTATGCTCTC
AACATATTTGATTTCTTGGGTCTCTTCATTGTCCTCGCAGGAATGGAGCG
GTACCACAGGGAGCCGGAGCCAGATACAGAAATGTTGACGCACTTTTCGT
TGTCGCCGGAAGAAGGGGAAGAGGGCGAGGAGGAAGAGGTGTTCTAG

Synonyms

Publications