|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr23 | genome | chr23:100109..103814 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00240.1 vs.
Match: GBG33404.1 (Hypothetical Protein FCC1311_096272 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 190.7 bits (483), Expect = 1.000e-44 Identity = 152/437 (34.78%), Postives = 232/437 (53.09%), Query Frame = 0
Query: 9 SLVKHVRAAVDAETFDLGGLNEAQVTHILSSAFATPFENLTEMVRLTFVVGGGKGVRARYDDSMPKWCSNALKGINFIEDKSAANDLASAGCFKFHHDTGKNLKSIVVFPLIAGAGGPGEEPEKENEGGAAGVAGGFNEAAVTGKERDMIVSISMAVFPDMMTSKCPSWSQKQRGLKDLLLPLQEAFESIEAKMMRGEQLSDSESALYEELSASQLKEKAEWTSQAMKAQVDKGQLTKADKERLLQQMEGRIDGLEKEKADAKEAGKEKKVLKLEEQIKTLRERKEKAVQIAIMVHNLKREAELKPLFRKHALLSK--ERDGIKGRL---LSVAEVKKFSEIDRLEEQIAALVEESKGFFESDEEVQDRAKASKKKALAGYKGEPAKKTGGATKSTSGGGWASVGGKGGGRGGGGGGGGGGGGGGKKPGNAFAALGD 441
S+ K +R +ET+DL GL + Q ++ +AF P + L M+++T VG GK RA+YDD + KW NALK I + +D+ A+ + AG FKF HDTGKN+K + VFP + + E E++G + AGG + ++ M F M+ +K P+W +K+R +L + S + K+ E+L++ E L E L+EK + MK+ V+ G+LT +KE +L+Q+ ++D + + D + + KK +LE +K ERKEK I+ + H L EL+ ++RK A + + E+ G KG LS AE ++ E D LEE++ L+ S+ +FESDEE Q R A++ + +A YK K A K+ G GWA+VG + GG GG GNAFAAL D
Sbjct: 3 SVAKTIREGTTSETYDLKGLTQEQANEVMKAAFEEPLK-LPTMIKITLTVGAGKLNRAKYDDDLGKWVCNALKDIGYEDDRGASLSMQCAGSFKFQHDTGKNMKYVHVFPRV------DDSVEDEDDGDDSNGAGGGQRGGSPLSAEWLCIASQMKTFQQMVNAKMPAWIEKRR-CSQMLKEQIDLLHSAQTKLASREELTEREQQLVNEGDEDLLQEKITFLVDKMKSMVENGKLTSGEKELVLEQVSSKMDAAKSQLEDCGD-DQPKKRERLETGLKAATERKEKIAGISPIKHELSNLKELRTVWRKLAPMDRLLEKAGPKGAWSAKLSPAEAERLGEKDSLEEELQGLLAASQHWFESDEEFQARVDAARAETMASYKAASKKAAAKAPKAP-GNGWATVGKSNTKKNNR----GGRGGASSGSGNAFAALAD 425
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGAGCCGC
GGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTCA
CACATATTCTGTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAA
ATGGTGCGACTGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCG
TTACGACGATAGCATGCCGAAATGGTGCTCTAATGCTCTGAAGGGTATCA
ATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGGATGT
TTCAAATTTCACCATGACACGGGCAAAAACCTTAAGTCCATCGTCGTCTT
CCCCCTTATCGCGGGCGCCGGGGGGCCAGGAGAGGAACCTGAGAAGGAGA
ACGAAGGGGGAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTG
ACAGGAAAAGAGCGGGACATGATCGTTTCCATCTCGATGGCCGTATTTCC
CGACATGATGACCTCCAAATGTCCCTCCTGGTCGCAGAAGCAACGGGGTC
TCAAAGATTTGCTCCTGCCGCTACAGGAAGCCTTTGAATCCATCGAGGCC
AAGATGATGCGCGGGGAACAGCTGTCGGACAGCGAGAGTGCTCTCTACGA
GGAACTGAGTGCCAGTCAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGG
CCATGAAGGCCCAAGTGGACAAGGGGCAGCTGACCAAAGCGGATAAGGAG
CGGCTGCTGCAGCAGATGGAGGGCAGGATTGATGGGCTGGAGAAGGAGAA
GGCGGATGCGAAAGAGGCAGGGAAGGAGAAGAAGGTCCTGAAGCTGGAGG
AGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGTCCAGATCGCC
ATTATGGTGCACAATTTGAAGCGGGAGGCCGAGCTCAAGCCCCTCTTCCG
CAAGCACGCCCTCCTAAGCAAGGAGAGGGATGGGATCAAAGGTCGTCTCT
TGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAATAGACCGCCTGGAGGAG
CAGATCGCCGCCCTGGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGA
GGAGGTGCAAGATCGGGCCAAGGCCAGCAAGAAAAAGGCGTTGGCAGGTT
ACAAGGGCGAACCGGCCAAGAAGACAGGAGGCGCAACGAAGAGCACCAGT
GGGGGCGGATGGGCCAGCGTGGGAGGGAAGGGGGGAGGGAGGGGCGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAAGCCCGGAAATG
CATTTGCGGCGCTTGGGGATGATAGTGATTAG back to topprotein sequence of NO23G00240.1 >NO23G00240.1-protein ID=NO23G00240.1-protein|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MAEEQQHHSLVKHVRAAVDAETFDLGGLNEAQVTHILSSAFATPFENLTE
MVRLTFVVGGGKGVRARYDDSMPKWCSNALKGINFIEDKSAANDLASAGC
FKFHHDTGKNLKSIVVFPLIAGAGGPGEEPEKENEGGAAGVAGGFNEAAV
TGKERDMIVSISMAVFPDMMTSKCPSWSQKQRGLKDLLLPLQEAFESIEA
KMMRGEQLSDSESALYEELSASQLKEKAEWTSQAMKAQVDKGQLTKADKE
RLLQQMEGRIDGLEKEKADAKEAGKEKKVLKLEEQIKTLRERKEKAVQIA
IMVHNLKREAELKPLFRKHALLSKERDGIKGRLLSVAEVKKFSEIDRLEE
QIAALVEESKGFFESDEEVQDRAKASKKKALAGYKGEPAKKTGGATKSTS
GGGWASVGGKGGGRGGGGGGGGGGGGGGKKPGNAFAALGDDSD* back to topmRNA from alignment at chr23:100109..103814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3706bp|location=Sequence derived from alignment at chr23:100109..103814- (Nannochloropsis oceanica)
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGTACGT
CTTGCCTGCTTCAGGGAGAGAGGGAGGGGAGGAAGGAGGGGACGGCAAGC
GGGTAGATAGCAAGGTCGTGATCATCGTCGTCCAGCTCACTCATGTGCAC
TCATGTGCGTCCACCTCATATACAAATAGAGCCGCGGTCGATGCCGAGAC
CTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTAAGTAGAGGGGAGGCAA
GGGCTGGAAGAAGGTAGGGCTTGAGGGAGGGGCGGTAGGCATGCCGCTGC
GGTAGACGTATTTCACATTCTCATCCTCTGTAACAGGTCACACATATTCT
GTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGAC
TGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGAT
AGCATGCCGGTAAGAGGGAGAGAGAGGAGGAGGGAGAGGGAGAGAAAGAG
AGGCCACTCACACAAGAACGCGAGGGTGATACTGAAAGACGGAGGAAGGA
GAAAAGGAAGGGAAAGAAAGGCCACTCACACAAGAACGCGAGGGTGATAT
TGAAAGAGGGAGAGAGGGGGAAGGGAGGGAAAGGAAGGCCCATCAAAAAT
ATATGCGAGACTGCTATCGAATGAGAAAGATATGTGATATTTGTTCTATC
TCACCTTTGTCTTTTTCTCCCTCCTCCATCAGAAATGGTGCTCTAATGCT
CTGAAGGGTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGC
ATCCGCTGGATGTTTCAAATTTCACCATGACACGGGTACGTCCCTCCCTC
CCTCCCTCCCTCCCTACCTCCCTCCCTTCCTCCCTGTTCTCCCTGCCGTA
CCGTCCTCCCTCCCTGCCCACACCCCCTTCCTATCTTTCTTTCCTCCCCT
TCTCTGCCCCTGCAGCGCTGGACATGGCTTCTGCGAATGCATGACTCCCC
TGTCCCCCTCCTTCCCTCCTCCCCCCTCCCCGTTTTTCTCTCTCAAAAAA
ACAAATAGGCAAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGG
GCGCCGGGGGGCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATC
CCCGTGTGCTCAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTC
CTCCTCTTCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCTC
TCTCTCTCTCCCACCTAAACGTCAGGAACCTGAGAAGGAGAACGAAGGGG
GAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTGACAGGAAAA
GAGCGGGACATGATCGTTTCCATCTCGGTACGCTGCTTTTCCCCTTCCTC
CCTCCGTCCCTCCCTCCTTCCCTCCCTCCCCTCCCTCCCTCCCTCCCGTC
CCTCCGTCCCTCCTCTCTCCCTCGGATGGCCGTCTTTTCCGACACTATGC
TTTCCGAATGCCAGTCCTCCACCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCAGATGGCCGTATTTCCCGACATGATGACCTCCAAAT
GTCCCTCCTGGTCGCAGAAGCAACGGGGTCTCAAAGATTTGCTCCTGCCG
CTACAGGAAGCCTTTGAATCCATCGAGGTACGTACGCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTTCCTCTTGATTGCGAGGATGTAAGCCTCTGCGGGTCAGTTAGCGCT
GATCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCT
TTCCCCCCTTCCTCCCTCCCTTCTGCTCTAGGCCAAGATGATGCGCGGGG
AACAGCTGTCGGACAGCGAGAGTGCTCTCTACGAGGAACTGAGTGCCAGT
CAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGGCCATGAAGGTACGCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTT
CCTTCCCCCCTCCGTTTCTCCTTCCTTCCCTCCCTCCCTTCCCTCCCCAT
CATGCTCTTACCTCGTCGAGCCCGTCATGCTATTCCGACGCCTACATCTC
CCATGTGCTTCCCAAACACCTTATTTTACCCTCGAATCCCTTCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCAGGCCCAAGTGGACAA
GGGGCAGCTGACCAAAGCGGATAAGGAGCGGCTGCTGCAGCAGATGGAGG
GCAGGATTGATGGGCTGGAGAAGGAGAAGGCGGATGCGAAAGAGGCAGGG
AAGGAGAAGAAGGTGAGGAAGGAAGGGACGGAGGGATGGAGGGAGGGAAG
GAGGGAAAAAAAAGAAGAGTTAAGAATATTTATCGCGTATAGGTTTGATC
GCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCAGGTCCTG
AAGCTGGAGGAGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGT
CCAGATCGCCATTATGGTGCACAATTTGAAGCGGGAGGTGAGGGAGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GGTCCGAAATAAAGTGCATGGGTGTGTGGGGAATATGAGTTTCAGAATGA
CGCGCTCGGGAAGATCAAAATCAAGATGAAGGCAAAAAGAGGGAGGAAAG
GAGGGAAGGAGAGCAGGAGGACAGGAGAGCGAGGAGGGTGGAGGAAGGAT
TAAATTCCAAGCGTTGCCTCAATACTCACCCCTCCCTCCCTCAGGCCGAG
CTCAAGCCCCTCTTCCGCAAGCACGCCCTCCTAAGCAAGGAGAGGGATGG
GATCAAAGGTCGTCTCTTGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAA
TAGACCGCCTGGAGGAGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGTA
AGGGGGAGAGGGAGGGAGGGAGGGGGGGAGAGATGGGATCAGTGGAGGAG
GGGCGGTGGACTGGACGCATTTCTTACGGGGGAGGTGATGAGGGAAGGAC
GGAAAGAGGGAAGGAGACAAGCGAACAGTAAATCTTCTCAAGCTATACGC
TTCACAAACCGCCCCTCCCTCCCTCCCTCCCTCCCTCAGATCGCCGCCCT
GGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGAGGAGGTGCAAGATC
GGGCCAAGGCCAGCAAGAAAAAGGTAGGCCGTTTCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTATCCCTCCCTCCCTCTT
TCCCTCCCATGCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCTCCCCTC
CTTTCTTCTCCCTGCTCCCGATCCCTCCCATCGTTCCATCACCCATCCCT
CCCTCCCTCAGGCGTTGGCAGGTTACAAGGGCGAACCGGCCAAGAAGACA
GGAGGCGCAACGAAGAGCACCAGTGGGGGCGGATGGGCCAGCGTGGGAGG
GAAGGGGGGAGGGAGGGGCGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGGAAAAAGCCCGGAAATGCATTTGCGGCGCTTGGGGATGATAGT
GATTAG back to topCoding sequence (CDS) from alignment at chr23:100109..103814- >NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr23:100109..103814- (Nannochloropsis oceanica)
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGAGCCGC
GGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTCA
CACATATTCTGTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAA
ATGGTGCGACTGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCG
TTACGACGATAGCATGCCGAAATGGTGCTCTAATGCTCTGAAGGGTATCA
ATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGGATGT
TTCAAATTTCACCATGACACGGGCAAAAACCTTAAGTCCATCGTCGTCTT
CCCCCTTATCGCGGGCGCCGGGGGGCCAGGAGAGGAACCTGAGAAGGAGA
ACGAAGGGGGAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTG
ACAGGAAAAGAGCGGGACATGATCGTTTCCATCTCGATGGCCGTATTTCC
CGACATGATGACCTCCAAATGTCCCTCCTGGTCGCAGAAGCAACGGGGTC
TCAAAGATTTGCTCCTGCCGCTACAGGAAGCCTTTGAATCCATCGAGGCC
AAGATGATGCGCGGGGAACAGCTGTCGGACAGCGAGAGTGCTCTCTACGA
GGAACTGAGTGCCAGTCAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGG
CCATGAAGGCCCAAGTGGACAAGGGGCAGCTGACCAAAGCGGATAAGGAG
CGGCTGCTGCAGCAGATGGAGGGCAGGATTGATGGGCTGGAGAAGGAGAA
GGCGGATGCGAAAGAGGCAGGGAAGGAGAAGAAGGTCCTGAAGCTGGAGG
AGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGTCCAGATCGCC
ATTATGGTGCACAATTTGAAGCGGGAGGCCGAGCTCAAGCCCCTCTTCCG
CAAGCACGCCCTCCTAAGCAAGGAGAGGGATGGGATCAAAGGTCGTCTCT
TGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAATAGACCGCCTGGAGGAG
CAGATCGCCGCCCTGGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGA
GGAGGTGCAAGATCGGGCCAAGGCCAGCAAGAAAAAGGCGTTGGCAGGTT
ACAAGGGCGAACCGGCCAAGAAGACAGGAGGCGCAACGAAGAGCACCAGT
GGGGGCGGATGGGCCAGCGTGGGAGGGAAGGGGGGAGGGAGGGGCGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAAGCCCGGAAATG
CATTTGCGGCGCTTGGGGATGATAGTGATTAG back to top
|