NO23G00240.1, NO23G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00240.1
Unique NameNO23G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1332
Alignment locationchr23:100109..103814 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:100109..103814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00240.1 vs.
Match: GBG33404.1 (Hypothetical Protein FCC1311_096272 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 190.7 bits (483), Expect = 1.000e-44
Identity = 152/437 (34.78%), Postives = 232/437 (53.09%), Query Frame = 0 
Query:    9 SLVKHVRAAVDAETFDLGGLNEAQVTHILSSAFATPFENLTEMVRLTFVVGGGKGVRARYDDSMPKWCSNALKGINFIEDKSAANDLASAGCFKFHHDTGKNLKSIVVFPLIAGAGGPGEEPEKENEGGAAGVAGGFNEAAVTGKERDMIVSISMAVFPDMMTSKCPSWSQKQRGLKDLLLPLQEAFESIEAKMMRGEQLSDSESALYEELSASQLKEKAEWTSQAMKAQVDKGQLTKADKERLLQQMEGRIDGLEKEKADAKEAGKEKKVLKLEEQIKTLRERKEKAVQIAIMVHNLKREAELKPLFRKHALLSK--ERDGIKGRL---LSVAEVKKFSEIDRLEEQIAALVEESKGFFESDEEVQDRAKASKKKALAGYKGEPAKKTGGATKSTSGGGWASVGGKGGGRGGGGGGGGGGGGGGKKPGNAFAALGD 441
            S+ K +R    +ET+DL GL + Q   ++ +AF  P + L  M+++T  VG GK  RA+YDD + KW  NALK I + +D+ A+  +  AG FKF HDTGKN+K + VFP +       +  E E++G  +  AGG            + ++  M  F  M+ +K P+W +K+R    +L    +   S + K+   E+L++ E  L  E     L+EK  +    MK+ V+ G+LT  +KE +L+Q+  ++D  + +  D  +  + KK  +LE  +K   ERKEK   I+ + H L    EL+ ++RK A + +  E+ G KG     LS AE ++  E D LEE++  L+  S+ +FESDEE Q R  A++ + +A YK    K    A K+  G GWA+VG     +       GG GG     GNAFAAL D
Sbjct:    3 SVAKTIREGTTSETYDLKGLTQEQANEVMKAAFEEPLK-LPTMIKITLTVGAGKLNRAKYDDDLGKWVCNALKDIGYEDDRGASLSMQCAGSFKFQHDTGKNMKYVHVFPRV------DDSVEDEDDGDDSNGAGGGQRGGSPLSAEWLCIASQMKTFQQMVNAKMPAWIEKRR-CSQMLKEQIDLLHSAQTKLASREELTEREQQLVNEGDEDLLQEKITFLVDKMKSMVENGKLTSGEKELVLEQVSSKMDAAKSQLEDCGD-DQPKKRERLETGLKAATERKEKIAGISPIKHELSNLKELRTVWRKLAPMDRLLEKAGPKGAWSAKLSPAEAERLGEKDSLEEELQGLLAASQHWFESDEEFQARVDAARAETMASYKAASKKAAAKAPKAP-GNGWATVGKSNTKKNNR----GGRGGASSGSGNAFAALAD 425
The following BLAST results are available for this feature:
BLAST of NO23G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000110012001300Expect = 1.00e-44 / Id = 34.78SequenceGBG33404.1
Match NameE-valueIdentityDescription
GBG33404.11.000e-4434.78Hypothetical Protein FCC1311_096272 [Aurantiochytr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00240NO23G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00240.1NO23G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00240.1.cds1NO23G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds2NO23G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds3NO23G00240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds4NO23G00240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds5NO23G00240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds6NO23G00240.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds7NO23G00240.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds8NO23G00240.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds9NO23G00240.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds10NO23G00240.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds11NO23G00240.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds12NO23G00240.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00240.1.cds13NO23G00240.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGAGCCGC
GGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTCA
CACATATTCTGTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAA
ATGGTGCGACTGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCG
TTACGACGATAGCATGCCGAAATGGTGCTCTAATGCTCTGAAGGGTATCA
ATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGGATGT
TTCAAATTTCACCATGACACGGGCAAAAACCTTAAGTCCATCGTCGTCTT
CCCCCTTATCGCGGGCGCCGGGGGGCCAGGAGAGGAACCTGAGAAGGAGA
ACGAAGGGGGAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTG
ACAGGAAAAGAGCGGGACATGATCGTTTCCATCTCGATGGCCGTATTTCC
CGACATGATGACCTCCAAATGTCCCTCCTGGTCGCAGAAGCAACGGGGTC
TCAAAGATTTGCTCCTGCCGCTACAGGAAGCCTTTGAATCCATCGAGGCC
AAGATGATGCGCGGGGAACAGCTGTCGGACAGCGAGAGTGCTCTCTACGA
GGAACTGAGTGCCAGTCAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGG
CCATGAAGGCCCAAGTGGACAAGGGGCAGCTGACCAAAGCGGATAAGGAG
CGGCTGCTGCAGCAGATGGAGGGCAGGATTGATGGGCTGGAGAAGGAGAA
GGCGGATGCGAAAGAGGCAGGGAAGGAGAAGAAGGTCCTGAAGCTGGAGG
AGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGTCCAGATCGCC
ATTATGGTGCACAATTTGAAGCGGGAGGCCGAGCTCAAGCCCCTCTTCCG
CAAGCACGCCCTCCTAAGCAAGGAGAGGGATGGGATCAAAGGTCGTCTCT
TGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAATAGACCGCCTGGAGGAG
CAGATCGCCGCCCTGGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGA
GGAGGTGCAAGATCGGGCCAAGGCCAGCAAGAAAAAGGCGTTGGCAGGTT
ACAAGGGCGAACCGGCCAAGAAGACAGGAGGCGCAACGAAGAGCACCAGT
GGGGGCGGATGGGCCAGCGTGGGAGGGAAGGGGGGAGGGAGGGGCGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAAGCCCGGAAATG
CATTTGCGGCGCTTGGGGATGATAGTGATTAG
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protein sequence of NO23G00240.1

>NO23G00240.1-protein ID=NO23G00240.1-protein|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MAEEQQHHSLVKHVRAAVDAETFDLGGLNEAQVTHILSSAFATPFENLTE
MVRLTFVVGGGKGVRARYDDSMPKWCSNALKGINFIEDKSAANDLASAGC
FKFHHDTGKNLKSIVVFPLIAGAGGPGEEPEKENEGGAAGVAGGFNEAAV
TGKERDMIVSISMAVFPDMMTSKCPSWSQKQRGLKDLLLPLQEAFESIEA
KMMRGEQLSDSESALYEELSASQLKEKAEWTSQAMKAQVDKGQLTKADKE
RLLQQMEGRIDGLEKEKADAKEAGKEKKVLKLEEQIKTLRERKEKAVQIA
IMVHNLKREAELKPLFRKHALLSKERDGIKGRLLSVAEVKKFSEIDRLEE
QIAALVEESKGFFESDEEVQDRAKASKKKALAGYKGEPAKKTGGATKSTS
GGGWASVGGKGGGRGGGGGGGGGGGGGGKKPGNAFAALGDDSD*
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mRNA from alignment at chr23:100109..103814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3706bp|location=Sequence derived from alignment at chr23:100109..103814- (Nannochloropsis oceanica)
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGTACGT
CTTGCCTGCTTCAGGGAGAGAGGGAGGGGAGGAAGGAGGGGACGGCAAGC
GGGTAGATAGCAAGGTCGTGATCATCGTCGTCCAGCTCACTCATGTGCAC
TCATGTGCGTCCACCTCATATACAAATAGAGCCGCGGTCGATGCCGAGAC
CTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTAAGTAGAGGGGAGGCAA
GGGCTGGAAGAAGGTAGGGCTTGAGGGAGGGGCGGTAGGCATGCCGCTGC
GGTAGACGTATTTCACATTCTCATCCTCTGTAACAGGTCACACATATTCT
GTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGAC
TGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGAT
AGCATGCCGGTAAGAGGGAGAGAGAGGAGGAGGGAGAGGGAGAGAAAGAG
AGGCCACTCACACAAGAACGCGAGGGTGATACTGAAAGACGGAGGAAGGA
GAAAAGGAAGGGAAAGAAAGGCCACTCACACAAGAACGCGAGGGTGATAT
TGAAAGAGGGAGAGAGGGGGAAGGGAGGGAAAGGAAGGCCCATCAAAAAT
ATATGCGAGACTGCTATCGAATGAGAAAGATATGTGATATTTGTTCTATC
TCACCTTTGTCTTTTTCTCCCTCCTCCATCAGAAATGGTGCTCTAATGCT
CTGAAGGGTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGC
ATCCGCTGGATGTTTCAAATTTCACCATGACACGGGTACGTCCCTCCCTC
CCTCCCTCCCTCCCTACCTCCCTCCCTTCCTCCCTGTTCTCCCTGCCGTA
CCGTCCTCCCTCCCTGCCCACACCCCCTTCCTATCTTTCTTTCCTCCCCT
TCTCTGCCCCTGCAGCGCTGGACATGGCTTCTGCGAATGCATGACTCCCC
TGTCCCCCTCCTTCCCTCCTCCCCCCTCCCCGTTTTTCTCTCTCAAAAAA
ACAAATAGGCAAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGG
GCGCCGGGGGGCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATC
CCCGTGTGCTCAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTC
CTCCTCTTCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCCTC
TCTCTCTCTCCCACCTAAACGTCAGGAACCTGAGAAGGAGAACGAAGGGG
GAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTGACAGGAAAA
GAGCGGGACATGATCGTTTCCATCTCGGTACGCTGCTTTTCCCCTTCCTC
CCTCCGTCCCTCCCTCCTTCCCTCCCTCCCCTCCCTCCCTCCCTCCCGTC
CCTCCGTCCCTCCTCTCTCCCTCGGATGGCCGTCTTTTCCGACACTATGC
TTTCCGAATGCCAGTCCTCCACCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCAGATGGCCGTATTTCCCGACATGATGACCTCCAAAT
GTCCCTCCTGGTCGCAGAAGCAACGGGGTCTCAAAGATTTGCTCCTGCCG
CTACAGGAAGCCTTTGAATCCATCGAGGTACGTACGCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTTCCTCTTGATTGCGAGGATGTAAGCCTCTGCGGGTCAGTTAGCGCT
GATCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCT
TTCCCCCCTTCCTCCCTCCCTTCTGCTCTAGGCCAAGATGATGCGCGGGG
AACAGCTGTCGGACAGCGAGAGTGCTCTCTACGAGGAACTGAGTGCCAGT
CAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGGCCATGAAGGTACGCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTT
CCTTCCCCCCTCCGTTTCTCCTTCCTTCCCTCCCTCCCTTCCCTCCCCAT
CATGCTCTTACCTCGTCGAGCCCGTCATGCTATTCCGACGCCTACATCTC
CCATGTGCTTCCCAAACACCTTATTTTACCCTCGAATCCCTTCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCAGGCCCAAGTGGACAA
GGGGCAGCTGACCAAAGCGGATAAGGAGCGGCTGCTGCAGCAGATGGAGG
GCAGGATTGATGGGCTGGAGAAGGAGAAGGCGGATGCGAAAGAGGCAGGG
AAGGAGAAGAAGGTGAGGAAGGAAGGGACGGAGGGATGGAGGGAGGGAAG
GAGGGAAAAAAAAGAAGAGTTAAGAATATTTATCGCGTATAGGTTTGATC
GCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCAGGTCCTG
AAGCTGGAGGAGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGT
CCAGATCGCCATTATGGTGCACAATTTGAAGCGGGAGGTGAGGGAGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GGTCCGAAATAAAGTGCATGGGTGTGTGGGGAATATGAGTTTCAGAATGA
CGCGCTCGGGAAGATCAAAATCAAGATGAAGGCAAAAAGAGGGAGGAAAG
GAGGGAAGGAGAGCAGGAGGACAGGAGAGCGAGGAGGGTGGAGGAAGGAT
TAAATTCCAAGCGTTGCCTCAATACTCACCCCTCCCTCCCTCAGGCCGAG
CTCAAGCCCCTCTTCCGCAAGCACGCCCTCCTAAGCAAGGAGAGGGATGG
GATCAAAGGTCGTCTCTTGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAA
TAGACCGCCTGGAGGAGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGTA
AGGGGGAGAGGGAGGGAGGGAGGGGGGGAGAGATGGGATCAGTGGAGGAG
GGGCGGTGGACTGGACGCATTTCTTACGGGGGAGGTGATGAGGGAAGGAC
GGAAAGAGGGAAGGAGACAAGCGAACAGTAAATCTTCTCAAGCTATACGC
TTCACAAACCGCCCCTCCCTCCCTCCCTCCCTCCCTCAGATCGCCGCCCT
GGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGAGGAGGTGCAAGATC
GGGCCAAGGCCAGCAAGAAAAAGGTAGGCCGTTTCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTATCCCTCCCTCCCTCTT
TCCCTCCCATGCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCTCCCCTC
CTTTCTTCTCCCTGCTCCCGATCCCTCCCATCGTTCCATCACCCATCCCT
CCCTCCCTCAGGCGTTGGCAGGTTACAAGGGCGAACCGGCCAAGAAGACA
GGAGGCGCAACGAAGAGCACCAGTGGGGGCGGATGGGCCAGCGTGGGAGG
GAAGGGGGGAGGGAGGGGCGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGGAAAAAGCCCGGAAATGCATTTGCGGCGCTTGGGGATGATAGT
GATTAG
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Coding sequence (CDS) from alignment at chr23:100109..103814-

>NO23G00240.1 ID=NO23G00240.1|Name=NO23G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr23:100109..103814- (Nannochloropsis oceanica)
ATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGAGCCGC
GGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTCA
CACATATTCTGTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAA
ATGGTGCGACTGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCG
TTACGACGATAGCATGCCGAAATGGTGCTCTAATGCTCTGAAGGGTATCA
ATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGGATGT
TTCAAATTTCACCATGACACGGGCAAAAACCTTAAGTCCATCGTCGTCTT
CCCCCTTATCGCGGGCGCCGGGGGGCCAGGAGAGGAACCTGAGAAGGAGA
ACGAAGGGGGAGCAGCAGGAGTAGCAGGAGGGTTCAATGAAGCGGCTGTG
ACAGGAAAAGAGCGGGACATGATCGTTTCCATCTCGATGGCCGTATTTCC
CGACATGATGACCTCCAAATGTCCCTCCTGGTCGCAGAAGCAACGGGGTC
TCAAAGATTTGCTCCTGCCGCTACAGGAAGCCTTTGAATCCATCGAGGCC
AAGATGATGCGCGGGGAACAGCTGTCGGACAGCGAGAGTGCTCTCTACGA
GGAACTGAGTGCCAGTCAGCTAAAGGAAAAAGCAGAGTGGACTAGTCAGG
CCATGAAGGCCCAAGTGGACAAGGGGCAGCTGACCAAAGCGGATAAGGAG
CGGCTGCTGCAGCAGATGGAGGGCAGGATTGATGGGCTGGAGAAGGAGAA
GGCGGATGCGAAAGAGGCAGGGAAGGAGAAGAAGGTCCTGAAGCTGGAGG
AGCAGATCAAGACGCTAAGGGAGCGAAAGGAGAAGGCCGTCCAGATCGCC
ATTATGGTGCACAATTTGAAGCGGGAGGCCGAGCTCAAGCCCCTCTTCCG
CAAGCACGCCCTCCTAAGCAAGGAGAGGGATGGGATCAAAGGTCGTCTCT
TGTCGGTGGCAGAGGTGAAGAAATTCTCGGAAATAGACCGCCTGGAGGAG
CAGATCGCCGCCCTGGTGGAGGAGTCCAAAGGCTTCTTCGAGAGTGACGA
GGAGGTGCAAGATCGGGCCAAGGCCAGCAAGAAAAAGGCGTTGGCAGGTT
ACAAGGGCGAACCGGCCAAGAAGACAGGAGGCGCAACGAAGAGCACCAGT
GGGGGCGGATGGGCCAGCGTGGGAGGGAAGGGGGGAGGGAGGGGCGGAGG
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAAGCCCGGAAATG
CATTTGCGGCGCTTGGGGATGATAGTGATTAG
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Synonyms
Publications