NO23G00220.1, NO23G00220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00220.1
Unique NameNO23G00220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr23:93141..95906 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:93141..95906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00220.1 vs.
Match: CBJ25885.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 256.9 bits (655), Expect = 1.000e-64
Identity = 155/388 (39.95%), Postives = 204/388 (52.58%), Query Frame = 0 
Query:   20 IIHLFPVTQAGQCVFRQTCINTGIDSPC--IPSLTDSTVFENGTFANSSFPMDEAHGFLMPHSDVWNGYMTD-ATGDCVEGIPDPTTGRCLTPSL------DLVPIVCPAYTNDSCCTWEQNYILYKNLHTLVKTFGGPQGCTACAVNLVDMWCALICSPEQSSFARPHNPPSAIRRDDLTSTDEEEVLAPVLQIDVWMMPDYVCALYDSCKSVNAVAQVSGMQSGLGLLTYQGQTGAVGHGEYFFFHFEKDSSDPSLIPLLR------------------PALDCASFFHPGTSDVPFP-------FPPPQE-----------DIISCSCTYCAAACEGKGLTTV----ASPISPFSGFDSPLVLGVYLTLFVVAIIAVGYRQYQRR 359
            ++ L P   AGQC F Q C   G+D+ C  IP+  D+ V         SFPMD +HGF + H  VW+G + + +TG C EG PD + GRC+   +      D+ PIVCP Y +  CC+W+QNY LY+NL  LV++FG   GC ACAVNLV+ WCAL+CSP+Q +FA  H+PP   RRDDLT          VLQ+DV +  D  C +Y+SCKS+  V + + MQSGLGLL +Q QTGAVGHGE+FF  FE ++S  S     R                   A   A      +S + F        F P              DIISC+C YC  AC G G   V     +PI    GF   LV GVY  +   ++    +R+ Q++
Sbjct:   30 LLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAV---------SFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPD-SDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQRRDDLTGGSSR-----VLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAESPCGNKRLPVSGGLDVRATERKDDPQAAASAPTASSESSSMSFDTLACDSFFDPGSSTIPFAYPPKREDIISCTCDYCVQACSGGGSIDVDVSDKNPIPVLDGFGVGLVGGVYAAVVACSLALFWWRRNQKK 402
The following BLAST results are available for this feature:
BLAST of NO23G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25885.11.000e-6439.95conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00220NO23G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00220.1NO23G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00220.1.cds1NO23G00220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds2NO23G00220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds3NO23G00220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds4NO23G00220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds5NO23G00220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds6NO23G00220.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds7NO23G00220.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds8NO23G00220.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds9NO23G00220.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds10NO23G00220.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds11NO23G00220.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00220.1.cds12NO23G00220.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00220.1 ID=NO23G00220.1|Name=NO23G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ATGATAATCAGAGTAGGGAGGTCGCGCGCCGTCCTCCTCCCCCCTGCCGT
CCTCTTTATTATACATCTCTTTCCCGTCACACAAGCGGGGCAATGCGTCT
TTCGACAGACCTGCATCAACACAGGCATCGACTCGCCTTGCATCCCGTCC
TTGACAGATTCGACGGTTTTTGAAAATGGGACATTTGCCAACAGCTCTTT
CCCGATGGATGAAGCACATGGCTTCCTCATGCCGCATTCGGACGTGTGGA
ACGGCTACATGACTGACGCCACAGGGGATTGTGTGGAAGGGATTCCCGAC
CCCACCACCGGCCGTTGCCTCACGCCCTCCCTCGATCTGGTCCCTATAGT
CTGTCCTGCGTATACCAACGACTCGTGCTGCACGTGGGAGCAGAATTACA
TCCTCTACAAAAACCTGCACACCCTGGTCAAGACCTTCGGCGGTCCTCAA
GGCTGCACGGCCTGCGCCGTCAATCTTGTGGATATGTGGTGTGCTCTCAT
CTGCAGTCCTGAACAGTCCTCCTTCGCTCGGCCTCATAACCCTCCCTCAG
CCATCCGGCGCGACGACCTGACCAGCACGGATGAGGAGGAGGTCCTTGCC
CCTGTTCTTCAGATAGACGTTTGGATGATGCCTGACTATGTTTGTGCCCT
CTACGACAGCTGCAAGAGCGTCAACGCTGTGGCGCAGGTCTCCGGCATGC
AATCAGGCCTCGGCCTCCTCACCTACCAGGGGCAAACAGGCGCCGTCGGA
CACGGAGAGTATTTCTTCTTCCACTTCGAGAAAGACTCCAGCGATCCCTC
CCTCATTCCCCTCCTCCGTCCCGCCCTCGACTGCGCCTCCTTCTTCCACC
CGGGGACCTCAGATGTGCCATTCCCTTTCCCCCCCCCTCAGGAAGACATC
ATCTCGTGCAGCTGCACCTACTGCGCTGCTGCGTGTGAGGGAAAGGGTCT
CACCACTGTGGCATCTCCCATCTCTCCCTTCTCAGGCTTTGACTCTCCCC
TGGTGCTGGGCGTCTATCTCACCCTTTTTGTCGTGGCTATCATCGCCGTG
GGCTATCGTCAATATCAAAGGAGAAATAAAGGGAGGGAGAGAGGACTGTC
GGCTTCACTTTTAGGAAATGAGGTCTTTGAGCACGAGGAGGAGGAGGAGG
ACGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGTGGAGGGTGA
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protein sequence of NO23G00220.1

>NO23G00220.1-protein ID=NO23G00220.1-protein|Name=NO23G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MIIRVGRSRAVLLPPAVLFIIHLFPVTQAGQCVFRQTCINTGIDSPCIPS
LTDSTVFENGTFANSSFPMDEAHGFLMPHSDVWNGYMTDATGDCVEGIPD
PTTGRCLTPSLDLVPIVCPAYTNDSCCTWEQNYILYKNLHTLVKTFGGPQ
GCTACAVNLVDMWCALICSPEQSSFARPHNPPSAIRRDDLTSTDEEEVLA
PVLQIDVWMMPDYVCALYDSCKSVNAVAQVSGMQSGLGLLTYQGQTGAVG
HGEYFFFHFEKDSSDPSLIPLLRPALDCASFFHPGTSDVPFPFPPPQEDI
ISCSCTYCAAACEGKGLTTVASPISPFSGFDSPLVLGVYLTLFVVAIIAV
GYRQYQRRNKGRERGLSASLLGNEVFEHEEEEEDEEEEEEEEEEEGGG*
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mRNA from alignment at chr23:93141..95906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00220.1 ID=NO23G00220.1|Name=NO23G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2766bp|location=Sequence derived from alignment at chr23:93141..95906+ (Nannochloropsis oceanica)
ATGATAATCAGAGTAGGGAGGTCGCGCGCCGTCCTCCTCCCCCCTGCCGT
CCTCTTTATTATACATCTCTTTCCCGTCACACAAGCGGGGCAATGCGTCT
TTCGACAGGTTTGTACTTGTGATGCATGCTTTCTTTGTATATGCTAGTAC
AGCACAACCCATTCTAGGCCTGCCCTCCCCCCCTCCCTCCCTTCCTCCCC
CGACAGACCTGCATCAACACAGGCATCGACTCGCCTTGCATCCCGTCCTT
GACAGATTCGACGGTTTTTGAAAATGGGTAAGTGCATGAGGGAAGACACG
GAGAGACGGGAAAACTTACAGCATGAAAGCTCATCCTCATTCCCTCTCCC
TCCTTCCCTCCCTCTCTCCCTCTCTCCTTCACTGGCTCTCTCCTTTCCAT
CACAGGACATTTGCCAACAGCTCTTTCCCGATGGATGAAGCACATGGCTT
CCTCATGCCGCATTCGGACGTGTGGAACGGCTACATGACTGACGCCACAG
GGGATTGTGTGGAAGGGGTAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGC
GAGGGAGGGAGGGAAAGGAGGAGAGGCCTGCAGCCCATGGACGGTATCTT
TTGTCGAGTCCTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCACAGA
TTCCCGACCCCACCACCGGCCGTTGCCTCACGCCCTCCCTCGATCTGGTC
CCTATAGTCTGTCCTGCGTATACCAACGACTCGTGCTGCACGTGGGAGCA
GAATTACATCCTCTACAAAAACCTGCACACCCTGGTCAAGACGTATGTAG
CCCTCCATCCCTCCCTCTTTCCTTCTTGCCCTTTAAACATCGTCCATGAC
GCGTAGATCTCACAAGCCCTCCCTCCCTCCCTCCCTCAGCTTCGGCGGTC
CTCAAGGCTGCACGGCCTGCGCCGTCAATCTTGTGGATATGTGGTGTGCT
CTCATCTGCAGTCCTGAACAGGTAGGGATGGATGGAGGGAGGGAGGAGGG
AGGATCGGTTTAGCTTCTCCTCCCACACTCACCTACCTCCCTCCCTCGTT
CCCTCCCTCCTTCCAGTCCTCCTTCGCTCGGCCTCATAACCCTCCCTCAG
CCATCCGGCGCGACGACCTGACCAGCACGGATGAGGAGGAGGTGAAGGAG
GAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AAGAATAACCTCATCAAACGCCCTACAACGAAAAAAGTGGTCGAAATTCC
CATGTACCCTCCCCCCTCCCTCCACCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTGCCCAAGGTCCTTGCCCCTGTTCTTCAGATAGACGTTTGGATG
ATGCCTGACTATGTTTGTGCCCTCTACGACAGCTGCAAGAGCGTCAACGC
TGTGGCGCAGGTACGCCCTGCCTCCCTCCCTCCCTCCCTCCCTCCTTCCC
TTCCTCCCTCCTTCGACTCCATCACCCCCCCTCCTCCCCCTCCTCCTCCC
ACAGGTCTCCGGCATGCAATCAGGCCTCGGCCTCCTCACCTACCAGGGGC
AAACAGGCGCCGTCGGACACGGAGAGTATTTCTTCTTCCACTTCGGTATG
CATGCCTTCTCTCCCTTCCACCCTCCCTCCCTCCCTTCCACTCATTATCA
GTCTGCCCCTTCAGTCACCAACATTCGTCACTCCCTCCTTCCCTCCCTTC
CCTCCCTTCCCTCCCTCCCATCCTCCCTTCCAGAGAAAGACTCCAGCGAT
CCCTCCCTCATTCCCCTCCTCCGTCCCGCCCTCGACTGCGCCTCCTTCTT
CCACCCGGGGACCTCAGATGTGCCATTCCCTTTCCCCCCCCCTCAGGAAG
ACATCATCTCGTGCAGGTAATCGCCCTCCCTCCCTCCCTCCTTCCCTTCT
TCCACTCCCGGGACCACAGAATAGTCCACCAGTGAAGAGGAGGAGGGAGG
GAGGGAGGGCGTGATGATGAGAGGGAGGGAGAGGAAGAATAGCATCCAAT
TTGAATGGGCTCACCTGACCCCGATCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTAGCTGCACCTACTGCGCTGCTGCGTGTGAGGGAAAGGGTCTCA
CCACTGTGGCATCTCCCATCTCTCCCTTCTCAGGCTTTGACTCTCCCCTG
GTGCTGGTAATACAAGGAGGGGATAGGGGGGGTGGGGAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGCTCCGGAGGCCGTGAC
TTTTCCCTCTCTCTCCCATCGCTTGGTGCTGATGAGGAGGGAGGAGGAGA
GGAAGGGTGCTGATGAGGAGGGAGGAGGAGAGGAAGGGTGCTGATGAGGA
GGGAGGCAGGAAACGCGGCTAGCAAGATGACTCGATGGAGCTCACCTTCA
TATACCGTCCTCCCTCTTTCCCTCCCTCTTTCCATTCCTTCTCTCTTTCA
TTCCCTATTTCCCTCCCTCTTTTCCTCCCTCCGTAGGGCGTCTATCTCAC
CCTTTTTGTCGTGGCTATCATCGCCGTGGGCTATCGTCAATATCAAAGGA
GAAATAAAGGGAGGGAGAGAGGTATGAATTAAGGGTGGAGGGAGGGAGGA
AGGGAGGGAGGGAAAGGGCATGGGTACTAACGGATTTATGTCACATTCCC
ACATACACATAGGACTGTCGGCTTCACTTTTAGGAAATGAGGTCTTTGAG
CACGAGGAGGAGGAGGAGGACGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGGTGGAGGGTGA
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Coding sequence (CDS) from alignment at chr23:93141..95906+

>NO23G00220.1 ID=NO23G00220.1|Name=NO23G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr23:93141..95906+ (Nannochloropsis oceanica)
ATGATAATCAGAGTAGGGAGGTCGCGCGCCGTCCTCCTCCCCCCTGCCGT
CCTCTTTATTATACATCTCTTTCCCGTCACACAAGCGGGGCAATGCGTCT
TTCGACAGACCTGCATCAACACAGGCATCGACTCGCCTTGCATCCCGTCC
TTGACAGATTCGACGGTTTTTGAAAATGGGACATTTGCCAACAGCTCTTT
CCCGATGGATGAAGCACATGGCTTCCTCATGCCGCATTCGGACGTGTGGA
ACGGCTACATGACTGACGCCACAGGGGATTGTGTGGAAGGGATTCCCGAC
CCCACCACCGGCCGTTGCCTCACGCCCTCCCTCGATCTGGTCCCTATAGT
CTGTCCTGCGTATACCAACGACTCGTGCTGCACGTGGGAGCAGAATTACA
TCCTCTACAAAAACCTGCACACCCTGGTCAAGACCTTCGGCGGTCCTCAA
GGCTGCACGGCCTGCGCCGTCAATCTTGTGGATATGTGGTGTGCTCTCAT
CTGCAGTCCTGAACAGTCCTCCTTCGCTCGGCCTCATAACCCTCCCTCAG
CCATCCGGCGCGACGACCTGACCAGCACGGATGAGGAGGAGGTCCTTGCC
CCTGTTCTTCAGATAGACGTTTGGATGATGCCTGACTATGTTTGTGCCCT
CTACGACAGCTGCAAGAGCGTCAACGCTGTGGCGCAGGTCTCCGGCATGC
AATCAGGCCTCGGCCTCCTCACCTACCAGGGGCAAACAGGCGCCGTCGGA
CACGGAGAGTATTTCTTCTTCCACTTCGAGAAAGACTCCAGCGATCCCTC
CCTCATTCCCCTCCTCCGTCCCGCCCTCGACTGCGCCTCCTTCTTCCACC
CGGGGACCTCAGATGTGCCATTCCCTTTCCCCCCCCCTCAGGAAGACATC
ATCTCGTGCAGCTGCACCTACTGCGCTGCTGCGTGTGAGGGAAAGGGTCT
CACCACTGTGGCATCTCCCATCTCTCCCTTCTCAGGCTTTGACTCTCCCC
TGGTGCTGGGCGTCTATCTCACCCTTTTTGTCGTGGCTATCATCGCCGTG
GGCTATCGTCAATATCAAAGGAGAAATAAAGGGAGGGAGAGAGGACTGTC
GGCTTCACTTTTAGGAAATGAGGTCTTTGAGCACGAGGAGGAGGAGGAGG
ACGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGTGGAGGGTGA
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Synonyms
Publications