NO22G02140.3, NO22G02140.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02140.3
Unique NameNO22G02140.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1591
Alignment locationchr22:663965..666756 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:663965..666756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02140.3 vs.
Match: EWM20538.1 (ccr4 carbon catabolite repression 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 9.300e-33
Identity = 80/147 (54.42%), Postives = 103/147 (70.07%), Query Frame = 0 
Query:    4 AASSSSSSSMATPAASSLLLPRRFLPIV----VNNEEHER----RTNTGMSGGEEGEEEEDSSIFTLLQWNIMADTFSSPSLYTRVPAIGVMEWGLRRVKILEEITRWQPDVVTLQEVDHFFDDLQPALQRLGYTGLFVRKPLNADG 143
            A  SSSSSS+++P     LLPR F+P+     +++E  ++    R   G +  EE +  ++S ++TL+QWN+MAD FSSPSLYTRV   G+M W  RR K+LEE+TRW PDVVTLQE+DH+FDDL PA   LGYTG FVRKPLN DG
Sbjct:   13 AVLSSSSSSLSSP-----LLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDG 154
The following BLAST results are available for this feature:
BLAST of NO22G02140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20538.19.300e-3354.42ccr4 carbon catabolite repression 4, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02140NO22G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02140.3NO22G02140.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02140.3.cds1NO22G02140.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds2NO22G02140.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds3NO22G02140.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds4NO22G02140.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds5NO22G02140.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds6NO22G02140.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.3.cds7NO22G02140.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGTGGAACATCATGGCCGACACATTTTCCTCC
CCCTCCCTTTACACCCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTT
AAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCG
TCACGCTACAGGAGGTGGATCACTTTTTTGATGACCTCCAACCCGCCCTC
CAACGCCTTGGCTACACCGGACTCTTTGTTCGTAAGCCCCTCAATGCTGA
TGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCC
ATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGT
GAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGAT
GGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGG
AGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAG
GCCATGAAAACTGCGGCGGGGGAGCAGGTACGGGCCTCTCAAGCCCGGCA
GCTGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGCCGTGCACATG
GACGCTCACTCCCTGTCCTCCTTTGTGGAGACTTTAATGCTGCTCCTCAC
GACAAGGAGGGAAGGGTCACCTCTCCCTCCCTCCCTCCCTCATCTTCCCC
TTCCCTAGAAGGAGGAGGAGGAGGAGGAGGAAGGGGGGGATACAGAGCTG
AGTGTGTACCGTTGCTGCGGAGGGAGGGTTTCGAGAGCGTGTATGACCTG
GAAGATCCCAATCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACTT
TCTCCGAAGGCGAAACAAAGCACTGCATCGACTACATCTTCCTCATCTCC
TCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCCT
TCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCCC
CCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTCT
CCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCGA
TCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGAG
GGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGATTATAA
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protein sequence of NO22G02140.3

>NO22G02140.3-protein ID=NO22G02140.3-protein|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MRAAASSSSSSSMATPAASSLLLPRRFLPIVVNNEEHERRTNTGMSGGEE
GEEEEDSSIFTLLQWNIMADTFSSPSLYTRVPAIGVMEWGLRRVKILEEI
TRWQPDVVTLQEVDHFFDDLQPALQRLGYTGLFVRKPLNADGAATFVKTS
SLEVVSSHAYSYLEEEEEEGEGGSEGGVRSRPSNQVALAVMVRNRKGRGR
RKGEEEEEEKGRREEWLVVNTHLKAMKTAAGEQVRASQARQLVAHIRAQR
EAYSRAHGRSLPVLLCGDFNAAPHDKEGRVTSPSLPPSSSPSLEGGGGGG
GRGGYRAECVPLLRREGFESVYDLEDPNLFTTWKFRPSSSSSSSSSFSSS
SSSSSRTFSEGETKHCIDYIFLISSSSSSSSSPSSSTSTLLPSASTPAPT
PSSSSFPPLPSFSLLPTHLLSIPSPAEIGPQALPCLSYPSDHLAIGMRFR
LVRGKDGGMEGGRGGGREGL*
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mRNA from alignment at chr22:663965..666756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGGTTTGCAATACTGCCATTTTTAATCTCTTA
GCGTAGCCTTTTTTCCTCCTTCCATTCCTCCCGTCTCCTCCCATCCCTCA
TTCCCTTCTCTTACAGTGGAGCATCGTGTTGTCGTCTGTGCCTCCCACTC
TTACCGCATGGACATATGTCTCTCCCTTACCATGTGGATGCATATGCTTC
TCCTCTCCCCACACGCGAGTATCCTCCATCTTCTCATTCCAGGCGCTCTC
CCCATCTATTCTCCTTGTCCTTTCTCTTCACCCCTCCCTCCCTCCCTCCC
CCTCCCTCAGTGGAACATCATGGCCGACACATTTTCCTCCCCCTCCCTTT
ACACCCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTTAAGAAGGGTG
AAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACA
GGTATCCCCACTTACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTGCATCCTCCTTCCTTTTGGCATGGGACACAC
ATGTTTTGCTTTTTCTGTTCATTCGCAATACTCGCACAACCCACACACCC
CTGTTACTCTCTCTCTCCTGTTAGACACCCTCCTCTCATTCTCCGCCTCC
TCCCTCCCCACAAACTCTTCCATTATGGTGGAATAATCTTCCACGCGAAT
CCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGAGGTGGATCACTTTT
TTGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTT
GTTCGTAAGCCCCTCAATGCTGATGGTATGTGGCCTTCCTCCCCCCCTTC
CTCCCTTCTTCTCTCGCCCTCATTCTCAGGTGATGTCTTTTACACCCTGC
CGCTGCTCAGGCTTCTCCCTCCCTCCCTCCCTCTCTCAGGCGCTGCCACC
TTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTA
CCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGA
GAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGG
AAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAG
GAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAACTG
CGGCGGGGGAGCAGGTACGAACGGAGAGAGGGAGGGAGGGAGTGGGAGAA
GCACGAAAGGCCCATATAGCCGGACACGTCCGGCCACTACTTGATGACAC
ACTCACCCTCAACCCTTCTCTTCCTTTCTTCTTTCCTTCCTCTCTCCTCT
CTCTTTCCCTCTCTCCCTTTCTCCAGGTACGGGCCTCTCAAGCCCGGCAG
CTGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGGTGAGTCCTTCC
CTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCTCCCTTTTCATTCCT
CTTTCTCTTTGCGCACTGACCAGCCTTCCTTCCCTTCCCCTCCCTTCCCT
TCCCTTCCTCCCTCTCCCCAGCCGTGCACATGGACGCTCACTCCCTGTCC
TCCTTTGTGGAGACTTTAATGCTGCTCCTCACGACAAGGAGGGAAGGGTC
ACCTCTCCCTCCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAGGAGGAGG
AGGAGGAGGAGGAAGGGGGGGATACAGAGCTGAGTGTGTACCGTTGCTGC
GGAGGGAGGGTTTCGAGAGCGTGTATGACCTGGAAGAGTAAGACTGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGATAGGGCGAGTCTTCATATGTCGCT
TTTTTTCTTGACTAATCCCTCCTCTTCCTCTTTCCCCCCCCCTCCTCCTC
TTCCTCTTCCCCTTCCTTCTCCTCTTCCCCTTCCTTCTCATCTTTCCCTT
CCTCCTCCTCCTCCTCTTCCTCTTCCCCTTCCTCCTCCTCCTCCTCCGTC
ACTCAGTCCCAATCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACT
TTCTCCGAAGGCGAAACAAAGCACTGCATCGACTACATCTTCCTCATCTC
CTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCC
TTCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCC
CCCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTC
TCCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCG
ATCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGA
GGGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGATTATAA
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Coding sequence (CDS) from alignment at chr22:663965..666756+

>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
ATGCGCGCCGCAGCCTCCTCCTCCTCCTCTTCTTCGATGGCTACCCCAGC
GGCGTCCTCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACA
ATGAGGAACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAG
GGAGAGGAGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGTGGAACAT
CATGGCCGACACATTTTCCTCCCCCTCCCTTTACACCCGTGTGCCCGCCA
TAGGGGTCATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATC
ACCCGCTGGCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTT
TGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTG
TTCGTAAGCCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCC
TCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGA
GGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGA
ATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGG
AGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCT
CGTCGTCAACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGG
TACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCACAACGT
GAAGCCTACAGCCGTGCACATGGACGCTCACTCCCTGTCCTCCTTTGTGG
AGACTTTAATGCTGCTCCTCACGACAAGGAGGGAAGGGTCACCTCTCCCT
CCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAGGAGGAGGAGGAGGAGGA
GGAAGGGGGGGATACAGAGCTGAGTGTGTACCGTTGCTGCGGAGGGAGGG
TTTCGAGAGCGTGTATGACCTGGAAGATCCCAATCTATTTACCACGTGGA
AATTTCGTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCCTCC
TCCTCCTCCTCCTCCCGCACTTTCTCCGAAGGCGAAACAAAGCACTGCAT
CGACTACATCTTCCTCATCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCT
CTTCATCCACCTCCACCCTCCTTCCGTCAGCCTCTACACCAGCTCCGACC
CCCTCCTCTTCCTCCTTCCCCCCCCTCCCCTCCTTTTCCCTTCTCCCTAC
CCATCTCCTCTCCATCCCCTCTCCAGCAGAGATCGGTCCTCAGGCCCTCC
CTTGTCTCAGCTACCCCTCCGATCATCTGGCCATTGGAATGCGTTTTCGT
CTCGTGAGGGGGAAGGACGGAGGGATGGAGGGAGGAAGGGGCGGAGGGAG
GGAGGGATTATAA
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Synonyms
Publications