NO22G02140.2, NO22G02140.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02140.2
Unique NameNO22G02140.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1530
Alignment locationchr22:663965..666756 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:663965..666756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02140.2 vs.
Match: EWM20536.1 (hypothetical protein Naga_101500g3 [Nannochloropsis gaditana])

HSP 1 Score: 123.2 bits (308), Expect = 1.700e-24
Identity = 92/150 (61.33%), Postives = 104/150 (69.33%), Query Frame = 0 
Query:  238 LEDPNLFTTWKFRPSSSSSSSSSFSSSSSSSSRTFS-----EGETKHCIDYIFLISSSS----SSSSSPSSSTSTLLPSASTPAPTPSSSSFPPLPSFSLLPTHLLSIPSPAEIGPQALPCLSYPSDHLAIGMRFRLVRGKDGGMEGGRG 379
            L  P+LFTTWKFRP  SSSSSSS SSSSSSSS + +     E ET+HCIDYIF++ + S    SSSSS SSS+S             SSSS     S SLLPTHLLSIP+ ++IGPQALPC SYPSDHLAIGMRFR +R KD G EGG G
Sbjct:   26 LPSPSLFTTWKFRPYPSSSSSSSSSSSSSSSSSSSAPSRPREVETRHCIDYIFVLPNPSPLPPSSSSSSSSSSS-------------SSSS-----SSSLLPTHLLSIPTLSQIGPQALPCPSYPSDHLAIGMRFRYLR-KDEGGEGGAG 156
The following BLAST results are available for this feature:
BLAST of NO22G02140.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20536.11.700e-2461.33hypothetical protein Naga_101500g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02140NO22G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02140.2NO22G02140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02140.2.cds1NO22G02140.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.2.cds2NO22G02140.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.2.cds3NO22G02140.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.2.cds4NO22G02140.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.2.cds5NO22G02140.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02140.2.cds6NO22G02140.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02140.2 ID=NO22G02140.2|Name=NO22G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGGGGTCATGGAATGGGGCTTAAGAAGGGTGA
AAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACAG
GAGGTGGATCACTTTTTTGATGACCTCCAACCCGCCCTCCAACGCCTTGG
CTACACCGGACTCTTTGTTCGTAAGCCCCTCAATGCTGATGGCGCTGCCA
CCTTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGC
TACCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGT
GAGAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATA
GGAAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGA
AGGAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAAC
TGCGGCGGGGGAGCAGGTACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCC
ATATACGGGCACAACGTGAAGCCTACAGCCGTGCACATGGACGCTCACTC
CCTGTCCTCCTTTGTGGAGACTTTAATGCTGCTCCTCACGACAAGGAGGG
AAGGGTCACCTCTCCCTCCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAG
GAGGAGGAGGAGGAGGAGGAAGGGGGGGATACAGAGCTGAGTGTGTACCG
TTGCTGCGGAGGGAGGGTTTCGAGAGCGTGTATGACCTGGAAGATCCCAA
TCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACTTTCTCCGAAGGC
GAAACAAAGCACTGCATCGACTACATCTTCCTCATCTCCTCCTCCTCCTC
CTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCCTTCCGTCAGCCT
CTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCCCCCCTCCCCTCC
TTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTCTCCAGCAGAGAT
CGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCGATCATCTGGCCA
TTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGAGGGATGGAGGGA
GGAAGGGGCGGAGGGAGGGAGGGATTATAA
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protein sequence of NO22G02140.2

>NO22G02140.2-protein ID=NO22G02140.2-protein|Name=NO22G02140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MEWGLRRVKILEEITRWQPDVVTLQEVDHFFDDLQPALQRLGYTGLFVRK
PLNADGAATFVKTSSLEVVSSHAYSYLEEEEEEGEGGSEGGVRSRPSNQV
ALAVMVRNRKGRGRRKGEEEEEEKGRREEWLVVNTHLKAMKTAAGEQVRA
SQARQLVAHIRAQREAYSRAHGRSLPVLLCGDFNAAPHDKEGRVTSPSLP
PSSSPSLEGGGGGGGRGGYRAECVPLLRREGFESVYDLEDPNLFTTWKFR
PSSSSSSSSSFSSSSSSSSRTFSEGETKHCIDYIFLISSSSSSSSSPSSS
TSTLLPSASTPAPTPSSSSFPPLPSFSLLPTHLLSIPSPAEIGPQALPCL
SYPSDHLAIGMRFRLVRGKDGGMEGGRGGGREGL*
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mRNA from alignment at chr22:663965..666756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02140.2 ID=NO22G02140.2|Name=NO22G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGGTTTGCAATACTGCCATTTTTAATCTCTTA
GCGTAGCCTTTTTTCCTCCTTCCATTCCTCCCGTCTCCTCCCATCCCTCA
TTCCCTTCTCTTACAGTGGAGCATCGTGTTGTCGTCTGTGCCTCCCACTC
TTACCGCATGGACATATGTCTCTCCCTTACCATGTGGATGCATATGCTTC
TCCTCTCCCCACACGCGAGTATCCTCCATCTTCTCATTCCAGGCGCTCTC
CCCATCTATTCTCCTTGTCCTTTCTCTTCACCCCTCCCTCCCTCCCTCCC
CCTCCCTCAGTGGAACATCATGGCCGACACATTTTCCTCCCCCTCCCTTT
ACACCCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTTAAGAAGGGTG
AAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACA
GGTATCCCCACTTACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTGCATCCTCCTTCCTTTTGGCATGGGACACAC
ATGTTTTGCTTTTTCTGTTCATTCGCAATACTCGCACAACCCACACACCC
CTGTTACTCTCTCTCTCCTGTTAGACACCCTCCTCTCATTCTCCGCCTCC
TCCCTCCCCACAAACTCTTCCATTATGGTGGAATAATCTTCCACGCGAAT
CCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGAGGTGGATCACTTTT
TTGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTT
GTTCGTAAGCCCCTCAATGCTGATGGTATGTGGCCTTCCTCCCCCCCTTC
CTCCCTTCTTCTCTCGCCCTCATTCTCAGGTGATGTCTTTTACACCCTGC
CGCTGCTCAGGCTTCTCCCTCCCTCCCTCCCTCTCTCAGGCGCTGCCACC
TTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTA
CCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGA
GAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGG
AAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAG
GAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAACTG
CGGCGGGGGAGCAGGTACGAACGGAGAGAGGGAGGGAGGGAGTGGGAGAA
GCACGAAAGGCCCATATAGCCGGACACGTCCGGCCACTACTTGATGACAC
ACTCACCCTCAACCCTTCTCTTCCTTTCTTCTTTCCTTCCTCTCTCCTCT
CTCTTTCCCTCTCTCCCTTTCTCCAGGTACGGGCCTCTCAAGCCCGGCAG
CTGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGGTGAGTCCTTCC
CTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCTCCCTTTTCATTCCT
CTTTCTCTTTGCGCACTGACCAGCCTTCCTTCCCTTCCCCTCCCTTCCCT
TCCCTTCCTCCCTCTCCCCAGCCGTGCACATGGACGCTCACTCCCTGTCC
TCCTTTGTGGAGACTTTAATGCTGCTCCTCACGACAAGGAGGGAAGGGTC
ACCTCTCCCTCCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAGGAGGAGG
AGGAGGAGGAGGAAGGGGGGGATACAGAGCTGAGTGTGTACCGTTGCTGC
GGAGGGAGGGTTTCGAGAGCGTGTATGACCTGGAAGAGTAAGACTGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGATAGGGCGAGTCTTCATATGTCGCT
TTTTTTCTTGACTAATCCCTCCTCTTCCTCTTTCCCCCCCCCTCCTCCTC
TTCCTCTTCCCCTTCCTTCTCCTCTTCCCCTTCCTTCTCATCTTTCCCTT
CCTCCTCCTCCTCCTCTTCCTCTTCCCCTTCCTCCTCCTCCTCCTCCGTC
ACTCAGTCCCAATCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACT
TTCTCCGAAGGCGAAACAAAGCACTGCATCGACTACATCTTCCTCATCTC
CTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCC
TTCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCC
CCCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTC
TCCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCG
ATCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGA
GGGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGATTATAA
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Coding sequence (CDS) from alignment at chr22:663965..666756+

>NO22G02140.2 ID=NO22G02140.2|Name=NO22G02140.2|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
ATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCTG
GCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTTTGATGACC
TCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTGTTCGTAAG
CCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGGA
GGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAGG
GGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGTG
GCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGGG
GGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTCA
ACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGGTACGGGCC
TCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCACAACGTGAAGCCTA
CAGCCGTGCACATGGACGCTCACTCCCTGTCCTCCTTTGTGGAGACTTTA
ATGCTGCTCCTCACGACAAGGAGGGAAGGGTCACCTCTCCCTCCCTCCCT
CCCTCATCTTCCCCTTCCCTAGAAGGAGGAGGAGGAGGAGGAGGAAGGGG
GGGATACAGAGCTGAGTGTGTACCGTTGCTGCGGAGGGAGGGTTTCGAGA
GCGTGTATGACCTGGAAGATCCCAATCTATTTACCACGTGGAAATTTCGT
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTC
CTCCTCCCGCACTTTCTCCGAAGGCGAAACAAAGCACTGCATCGACTACA
TCTTCCTCATCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCC
ACCTCCACCCTCCTTCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTC
TTCCTCCTTCCCCCCCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCC
TCTCCATCCCCTCTCCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTC
AGCTACCCCTCCGATCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAG
GGGGAAGGACGGAGGGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGAT
TATAA
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Synonyms
Publications