NO22G01800.1, NO22G01800.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01800.1
Unique Name	NO22G01800.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2400
Alignment location	chr22:528175..530574 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:528175..530574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO22G01800.1 vs.

BLAST of NO22G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01800	NO22G01800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01800.1	NO22G01800.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01800.1.cds1	NO22G01800.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:528175..530574+
coding sequence from alignment at chr22:528175..530574+

mRNA sequence

>NO22G01800.1 ID=NO22G01800.1|Name=NO22G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp
ATGGACCAAGAAGAAAAAAATCTTGCACGGGCCAGCACTTTGATGAGCTC
TGCCCCTCACTTTCTTACGAGGGAGGAGGAGAAAGCGATGGCGCAAGAGC
AGCAGCAGGAAAAGCCGGAAGAGGAGCAGGAGCATTGGGATGGGGAGGGG
GATTCCCAGGGAGCCTTTCCGTCGCTATCCGCCACATCATCGTCTTCCTT
CACCTATTCCTCGTCTTTGCAGCATGTGTGGTCATCAGCTGGAGTGAGGA
TCGCAGGGCTCTCGCCAGTGTACGACAAAAAAGAGGAGGTTGCGGTAACA
CCTCCTTCCTCCTCTTCCTCCTCCTCCCCCTCCACTCTCACCGACACCTC
GATTTCTGCGATTTCTGCCGCTCTGGAGCAGGAAGACGAGAGCATCACAT
GGACAGCAGCAACAGAAACAACCACAGAAGCGACTCCCCTGGTCGATGGA
AGTGTCGTGCGTCTCCTCCTTGATCCTCCTGATGAGAAGGACGTTGTCGA
TGCGAGGGATGTGGACGGAGCCAGCATAGAGTCAGTGAGAGGAGATGAAG
AAAGCGAGGATCTAGAGAGAGAAATAGCGTACATGGAGCAGAGCCAGAAA
AGTCAGGAGGAGGAAGGGGAGGATGAAGGGAGACAGAGAAGGGCGGCACG
GGTCGTCGGCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGG
ATGAGGAGGAGGAGGAGAGGGAGAGGGAGGAAGGGAGGGATGCTGGAGGT
GGGCTGCCAGTTGTGATGACATCGATGGAGGTAAAAAGAGAAGAAGAGAG
GGAAGAGAAGGATGACGAAGTGGCAGCAGCAGCAACAGCAGCAGCAGCAG
CACCACCACCACCACCACCATCATTATCATCATCAGTAGCGACGACGACG
ACCAAAGTGGCCAAGACCTTTGAGGAAGAGGAGGACAAACAGAAGGAAGA
GAAGGAGAAGGAATGCAAGGAAGAAGGGAAGGAAGAAGGGAAGGGGGAAA
GGGAGGAGGCCATGGCCATAGCAGTGCAAGGAAAAGAAGGAGAAAACGAC
GTTAGCCGCGCGCTGTTCAGGGATGAAGAGGAAGTGGAAGAGGTGGAAGA
AAAGGAGGGAGAAGGCGATCCCGCCGTAATCCAGCAGCAGGCCCGTCATG
AAGCTTACATTCTCCTCGTCCTCACCCTCTACCTCCCCTTCTTCTTACTG
GTCAAGGCCTCTAGATGGACTCCAATCTTCCTTAAGATGGTTGCGTTGGG
CACCCTGGCGTTGCTGTTTCGCCTCGTGCATGCGATTAATCGTTCGGGTA
TAGGTGGGGAAAAAGGGGAGGGAGGGAGGGAGGGAGGGATGGTGCTGAGG
AGGGGGGAAGGAGGGAGAGAAGGGCGGCAGGAGGAGCAGGAGGAGACGCA
GCAGGGTTTTCCTTTCTTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGCTGCTGGTGCTGCTGCTGCCACTAGTGCCCCCGAAGGAGGGACA
GTCTCTCCCGTGAAGTCCTCCTCTTTTTCATCTGCTGTCGTCACTCCTTC
TCCTGTCAACAGCAAAAGCAGCAGTCGCAGTCGCAGCAGCAGCGGCAGCC
ACAGCAGTAGCAGCCGCAGCAGCAGCAGCAGAGATCGAAATGCCTCGCTC
TCTCCGTTTTCCTCCCCTAATTTCTCCTTCTCCATCTATTCCTCCTCCGC
CGCTTCGACTCAGCCACAGAATGAGCCTTGCTCCTCCAAGGGAGGGAAGG
AAAGGAGGGAGGGAGGGAGGAAGGAAGGGAAGGATTGGGTGGAGCAGGTG
ACCTCTGTGTGGACCCTCTCTCCTATTTCTGAGGGAGGATCTCCGGAGGC
GAGGAAAAGAGGGGGGAAGGATGAAATGGAGGAGGAGGGGGAAGAGGGGG
AGGGAGTAGAAGAGGAGGGGAGGGACGAGGTGGAGGAGGAGGGAGAGGAG
GGGTGGGGGCAGGGATGGAGGGAAAGTGGGAAGGGGAGGGAGGGAGGGAA
GGAGAAGAAGGGAAGATTTTTGCAGTTGGCCTCGCTGCTGAAGGAGAAAA
ACAATGAGCACCACCACTATCAGCAGCAGCAGCAGCAGACGCGCCATGAG
CAGCAGCAGCAGACGCAGCAGAGGAAAAAGGGACTGGTGGTCGTATTTGA
CAAGATCAAGAAAAGCGCCGCCTCCTCCTCCTCCTCCTCCCCCTCCTTCC
CCCCCTGGTCCTCTTCCACCTCCTCTGTACCCTCCTCACTTTCCTCCATT
CCACCCTCCTCTCTTGCACGAGCAGCAGCTGTGTGCACGTCTCTTTCCTC
CCCTGCTGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGACGAGCAGCAGCC
GCAATATGGGCGGAGGCTTGGGAGCGCGCTTGTTAAGGAAGAAGGGCTAG

protein sequence of NO22G01800.1

>NO22G01800.1-protein ID=NO22G01800.1-protein|Name=NO22G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp
MDQEEKNLARASTLMSSAPHFLTREEEKAMAQEQQQEKPEEEQEHWDGEG
DSQGAFPSLSATSSSSFTYSSSLQHVWSSAGVRIAGLSPVYDKKEEVAVT
PPSSSSSSSPSTLTDTSISAISAALEQEDESITWTAATETTTEATPLVDG
SVVRLLLDPPDEKDVVDARDVDGASIESVRGDEESEDLEREIAYMEQSQK
SQEEEGEDEGRQRRAARVVGWEEEEEEEEEQEEDEEEEEREREEGRDAGG
GLPVVMTSMEVKREEEREEKDDEVAAAATAAAAAPPPPPPSLSSSVATTT
TKVAKTFEEEEDKQKEEKEKECKEEGKEEGKGEREEAMAIAVQGKEGEND
VSRALFRDEEEVEEVEEKEGEGDPAVIQQQARHEAYILLVLTLYLPFFLL
VKASRWTPIFLKMVALGTLALLFRLVHAINRSGIGGEKGEGGREGGMVLR
RGEGGREGRQEEQEETQQGFPFFGAGAGAGAGAGAAAGAAAATSAPEGGT
VSPVKSSSFSSAVVTPSPVNSKSSSRSRSSSGSHSSSSRSSSSRDRNASL
SPFSSPNFSFSIYSSSAASTQPQNEPCSSKGGKERREGGRKEGKDWVEQV
TSVWTLSPISEGGSPEARKRGGKDEMEEEGEEGEGVEEEGRDEVEEEGEE
GWGQGWRESGKGREGGKEKKGRFLQLASLLKEKNNEHHHYQQQQQQTRHE
QQQQTQQRKKGLVVVFDKIKKSAASSSSSSPSFPPWSSSTSSVPSSLSSI
PPSSLARAAAVCTSLSSPAGREGGREGGKTSSSRNMGGGLGARLLRKKG*

mRNA from alignment at chr22:528175..530574+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01800.1 ID=NO22G01800.1|Name=NO22G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp|location=Sequence derived from alignment at chr22:528175..530574+ (Nannochloropsis oceanica)
ATGGACCAAGAAGAAAAAAATCTTGCACGGGCCAGCACTTTGATGAGCTC
TGCCCCTCACTTTCTTACGAGGGAGGAGGAGAAAGCGATGGCGCAAGAGC
AGCAGCAGGAAAAGCCGGAAGAGGAGCAGGAGCATTGGGATGGGGAGGGG
GATTCCCAGGGAGCCTTTCCGTCGCTATCCGCCACATCATCGTCTTCCTT
CACCTATTCCTCGTCTTTGCAGCATGTGTGGTCATCAGCTGGAGTGAGGA
TCGCAGGGCTCTCGCCAGTGTACGACAAAAAAGAGGAGGTTGCGGTAACA
CCTCCTTCCTCCTCTTCCTCCTCCTCCCCCTCCACTCTCACCGACACCTC
GATTTCTGCGATTTCTGCCGCTCTGGAGCAGGAAGACGAGAGCATCACAT
GGACAGCAGCAACAGAAACAACCACAGAAGCGACTCCCCTGGTCGATGGA
AGTGTCGTGCGTCTCCTCCTTGATCCTCCTGATGAGAAGGACGTTGTCGA
TGCGAGGGATGTGGACGGAGCCAGCATAGAGTCAGTGAGAGGAGATGAAG
AAAGCGAGGATCTAGAGAGAGAAATAGCGTACATGGAGCAGAGCCAGAAA
AGTCAGGAGGAGGAAGGGGAGGATGAAGGGAGACAGAGAAGGGCGGCACG
GGTCGTCGGCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGG
ATGAGGAGGAGGAGGAGAGGGAGAGGGAGGAAGGGAGGGATGCTGGAGGT
GGGCTGCCAGTTGTGATGACATCGATGGAGGTAAAAAGAGAAGAAGAGAG
GGAAGAGAAGGATGACGAAGTGGCAGCAGCAGCAACAGCAGCAGCAGCAG
CACCACCACCACCACCACCATCATTATCATCATCAGTAGCGACGACGACG
ACCAAAGTGGCCAAGACCTTTGAGGAAGAGGAGGACAAACAGAAGGAAGA
GAAGGAGAAGGAATGCAAGGAAGAAGGGAAGGAAGAAGGGAAGGGGGAAA
GGGAGGAGGCCATGGCCATAGCAGTGCAAGGAAAAGAAGGAGAAAACGAC
GTTAGCCGCGCGCTGTTCAGGGATGAAGAGGAAGTGGAAGAGGTGGAAGA
AAAGGAGGGAGAAGGCGATCCCGCCGTAATCCAGCAGCAGGCCCGTCATG
AAGCTTACATTCTCCTCGTCCTCACCCTCTACCTCCCCTTCTTCTTACTG
GTCAAGGCCTCTAGATGGACTCCAATCTTCCTTAAGATGGTTGCGTTGGG
CACCCTGGCGTTGCTGTTTCGCCTCGTGCATGCGATTAATCGTTCGGGTA
TAGGTGGGGAAAAAGGGGAGGGAGGGAGGGAGGGAGGGATGGTGCTGAGG
AGGGGGGAAGGAGGGAGAGAAGGGCGGCAGGAGGAGCAGGAGGAGACGCA
GCAGGGTTTTCCTTTCTTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGCTGCTGGTGCTGCTGCTGCCACTAGTGCCCCCGAAGGAGGGACA
GTCTCTCCCGTGAAGTCCTCCTCTTTTTCATCTGCTGTCGTCACTCCTTC
TCCTGTCAACAGCAAAAGCAGCAGTCGCAGTCGCAGCAGCAGCGGCAGCC
ACAGCAGTAGCAGCCGCAGCAGCAGCAGCAGAGATCGAAATGCCTCGCTC
TCTCCGTTTTCCTCCCCTAATTTCTCCTTCTCCATCTATTCCTCCTCCGC
CGCTTCGACTCAGCCACAGAATGAGCCTTGCTCCTCCAAGGGAGGGAAGG
AAAGGAGGGAGGGAGGGAGGAAGGAAGGGAAGGATTGGGTGGAGCAGGTG
ACCTCTGTGTGGACCCTCTCTCCTATTTCTGAGGGAGGATCTCCGGAGGC
GAGGAAAAGAGGGGGGAAGGATGAAATGGAGGAGGAGGGGGAAGAGGGGG
AGGGAGTAGAAGAGGAGGGGAGGGACGAGGTGGAGGAGGAGGGAGAGGAG
GGGTGGGGGCAGGGATGGAGGGAAAGTGGGAAGGGGAGGGAGGGAGGGAA
GGAGAAGAAGGGAAGATTTTTGCAGTTGGCCTCGCTGCTGAAGGAGAAAA
ACAATGAGCACCACCACTATCAGCAGCAGCAGCAGCAGACGCGCCATGAG
CAGCAGCAGCAGACGCAGCAGAGGAAAAAGGGACTGGTGGTCGTATTTGA
CAAGATCAAGAAAAGCGCCGCCTCCTCCTCCTCCTCCTCCCCCTCCTTCC
CCCCCTGGTCCTCTTCCACCTCCTCTGTACCCTCCTCACTTTCCTCCATT
CCACCCTCCTCTCTTGCACGAGCAGCAGCTGTGTGCACGTCTCTTTCCTC
CCCTGCTGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGACGAGCAGCAGCC
GCAATATGGGCGGAGGCTTGGGAGCGCGCTTGTTAAGGAAGAAGGGCTAG

Coding sequence (CDS) from alignment at chr22:528175..530574+

>NO22G01800.1 ID=NO22G01800.1|Name=NO22G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at chr22:528175..530574+ (Nannochloropsis oceanica)
ATGGACCAAGAAGAAAAAAATCTTGCACGGGCCAGCACTTTGATGAGCTC
TGCCCCTCACTTTCTTACGAGGGAGGAGGAGAAAGCGATGGCGCAAGAGC
AGCAGCAGGAAAAGCCGGAAGAGGAGCAGGAGCATTGGGATGGGGAGGGG
GATTCCCAGGGAGCCTTTCCGTCGCTATCCGCCACATCATCGTCTTCCTT
CACCTATTCCTCGTCTTTGCAGCATGTGTGGTCATCAGCTGGAGTGAGGA
TCGCAGGGCTCTCGCCAGTGTACGACAAAAAAGAGGAGGTTGCGGTAACA
CCTCCTTCCTCCTCTTCCTCCTCCTCCCCCTCCACTCTCACCGACACCTC
GATTTCTGCGATTTCTGCCGCTCTGGAGCAGGAAGACGAGAGCATCACAT
GGACAGCAGCAACAGAAACAACCACAGAAGCGACTCCCCTGGTCGATGGA
AGTGTCGTGCGTCTCCTCCTTGATCCTCCTGATGAGAAGGACGTTGTCGA
TGCGAGGGATGTGGACGGAGCCAGCATAGAGTCAGTGAGAGGAGATGAAG
AAAGCGAGGATCTAGAGAGAGAAATAGCGTACATGGAGCAGAGCCAGAAA
AGTCAGGAGGAGGAAGGGGAGGATGAAGGGAGACAGAGAAGGGCGGCACG
GGTCGTCGGCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGG
ATGAGGAGGAGGAGGAGAGGGAGAGGGAGGAAGGGAGGGATGCTGGAGGT
GGGCTGCCAGTTGTGATGACATCGATGGAGGTAAAAAGAGAAGAAGAGAG
GGAAGAGAAGGATGACGAAGTGGCAGCAGCAGCAACAGCAGCAGCAGCAG
CACCACCACCACCACCACCATCATTATCATCATCAGTAGCGACGACGACG
ACCAAAGTGGCCAAGACCTTTGAGGAAGAGGAGGACAAACAGAAGGAAGA
GAAGGAGAAGGAATGCAAGGAAGAAGGGAAGGAAGAAGGGAAGGGGGAAA
GGGAGGAGGCCATGGCCATAGCAGTGCAAGGAAAAGAAGGAGAAAACGAC
GTTAGCCGCGCGCTGTTCAGGGATGAAGAGGAAGTGGAAGAGGTGGAAGA
AAAGGAGGGAGAAGGCGATCCCGCCGTAATCCAGCAGCAGGCCCGTCATG
AAGCTTACATTCTCCTCGTCCTCACCCTCTACCTCCCCTTCTTCTTACTG
GTCAAGGCCTCTAGATGGACTCCAATCTTCCTTAAGATGGTTGCGTTGGG
CACCCTGGCGTTGCTGTTTCGCCTCGTGCATGCGATTAATCGTTCGGGTA
TAGGTGGGGAAAAAGGGGAGGGAGGGAGGGAGGGAGGGATGGTGCTGAGG
AGGGGGGAAGGAGGGAGAGAAGGGCGGCAGGAGGAGCAGGAGGAGACGCA
GCAGGGTTTTCCTTTCTTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGCTGCTGGTGCTGCTGCTGCCACTAGTGCCCCCGAAGGAGGGACA
GTCTCTCCCGTGAAGTCCTCCTCTTTTTCATCTGCTGTCGTCACTCCTTC
TCCTGTCAACAGCAAAAGCAGCAGTCGCAGTCGCAGCAGCAGCGGCAGCC
ACAGCAGTAGCAGCCGCAGCAGCAGCAGCAGAGATCGAAATGCCTCGCTC
TCTCCGTTTTCCTCCCCTAATTTCTCCTTCTCCATCTATTCCTCCTCCGC
CGCTTCGACTCAGCCACAGAATGAGCCTTGCTCCTCCAAGGGAGGGAAGG
AAAGGAGGGAGGGAGGGAGGAAGGAAGGGAAGGATTGGGTGGAGCAGGTG
ACCTCTGTGTGGACCCTCTCTCCTATTTCTGAGGGAGGATCTCCGGAGGC
GAGGAAAAGAGGGGGGAAGGATGAAATGGAGGAGGAGGGGGAAGAGGGGG
AGGGAGTAGAAGAGGAGGGGAGGGACGAGGTGGAGGAGGAGGGAGAGGAG
GGGTGGGGGCAGGGATGGAGGGAAAGTGGGAAGGGGAGGGAGGGAGGGAA
GGAGAAGAAGGGAAGATTTTTGCAGTTGGCCTCGCTGCTGAAGGAGAAAA
ACAATGAGCACCACCACTATCAGCAGCAGCAGCAGCAGACGCGCCATGAG
CAGCAGCAGCAGACGCAGCAGAGGAAAAAGGGACTGGTGGTCGTATTTGA
CAAGATCAAGAAAAGCGCCGCCTCCTCCTCCTCCTCCTCCCCCTCCTTCC
CCCCCTGGTCCTCTTCCACCTCCTCTGTACCCTCCTCACTTTCCTCCATT
CCACCCTCCTCTCTTGCACGAGCAGCAGCTGTGTGCACGTCTCTTTCCTC
CCCTGCTGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGACGAGCAGCAGCC
GCAATATGGGCGGAGGCTTGGGAGCGCGCTTGTTAAGGAAGAAGGGCTAG

Synonyms

Publications