NO22G01500.1, NO22G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01500.1
Unique NameNO22G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length234
Alignment locationchr22:444939..445324 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:444939..445324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G01500.1 vs.
Match: KUI58687.1 (hypothetical protein VP1G_05982 [Valsa mali var. pyri]; KUI70678.1 hypothetical protein VM1G_06120 [Valsa mali])

HSP 1 Score: 76.3 bits (186), Expect = 4.800e-11
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:    1 MGGGNGAKSASKRERNAKAKGPEAKSILKEKAKMMSQMCMICRATFMCTAKRPELEAHASTKHPKDTLAKCFPTLDA 78
            MGGGNGAKSA KRERNAK  G EAKS LK   +     C +C +TF+ T + P L  HA+ KH K TLA+CFPT  A
Sbjct:    1 MGGGNGAKSAQKRERNAKNAGKEAKSQLKVNEQAKDIQCKVCFSTFLKTTRGPALTEHAANKHSK-TLAECFPTYTA 76
The following BLAST results are available for this feature:
BLAST of NO22G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KUI58687.14.800e-1157.14hypothetical protein VP1G_05982 [Valsa mali var. p... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01500NO22G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01500.1NO22G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01500.1.cds1NO22G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01500.1.cds2NO22G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01500.1 ID=NO22G01500.1|Name=NO22G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=234bp
ATGGGTGGAGGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGC
CAAGGCCAAGGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGA
TGATGAGCCAGATGTGCATGATTTGCCGAGCCACTTTCATGTGCACGGCA
AAGCGACCCGAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGACAC
CCTTGCCAAGTGCTTTCCTACTCTGGACGCGTAA
back to top

protein sequence of NO22G01500.1

>NO22G01500.1-protein ID=NO22G01500.1-protein|Name=NO22G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MGGGNGAKSASKRERNAKAKGPEAKSILKEKAKMMSQMCMICRATFMCTA
KRPELEAHASTKHPKDTLAKCFPTLDA*
back to top

mRNA from alignment at chr22:444939..445324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01500.1 ID=NO22G01500.1|Name=NO22G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=386bp|location=Sequence derived from alignment at chr22:444939..445324+ (Nannochloropsis oceanica)
ATGGGTGGAGGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGC
CAAGGCCAAGGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGA
TGATGAGCCAGATGTGCATGATTTGCCGAGTAAGTAATGCCTTGAGAAGG
AATTGGAGAGGGGGTATCGGGAGGAATAGGGTCTAAGAGAACTTTTGTGT
TAGGTGAATATAATTTTGTGAGGTTTCTTTCTTCCTCTTAACTTTCCTCC
TTCCCTCATCAATCTACCCACCCACACATAGGCCACTTTCATGTGCACGG
CAAAGCGACCCGAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGAC
ACCCTTGCCAAGTGCTTTCCTACTCTGGACGCGTAA
back to top

Coding sequence (CDS) from alignment at chr22:444939..445324+

>NO22G01500.1 ID=NO22G01500.1|Name=NO22G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at chr22:444939..445324+ (Nannochloropsis oceanica)
ATGGGTGGAGGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGC
CAAGGCCAAGGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGA
TGATGAGCCAGATGTGCATGATTTGCCGAGCCACTTTCATGTGCACGGCA
AAGCGACCCGAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGACAC
CCTTGCCAAGTGCTTTCCTACTCTGGACGCGTAA
back to top
Synonyms
Publications