NO22G01440.1, NO22G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01440.1
Unique NameNO22G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr22:425001..425780 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:425001..425780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01440.1 vs.
Match: EWM21485.1 (translation elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 464.5 bits (1194), Expect = 2.100e-127
Identity = 225/237 (94.94%), Postives = 228/237 (96.20%), Query Frame = 0 
Query:    1 MGKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKFEKEAAEMGKSSFKYAWVLDKLKAERERGITIDIALWKFESPKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVASGTGEFEAGIGKDGQTREHALLAFTLGVKQMIVCVNKMDDSSVNYGEARFNEIKEEVSNYLKKVGYKPAKVPFIPISGWNGDNMIEKSTNMAWYKGPTLLEALDNINPPSAPRTSPSACP 238
            MGKEK HVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKFEKEAAE+GKSSFKYAWVLDKLKAERERGITIDIALWKFESPKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVASGTGEFEAGIGKDGQTREHALLAFTLGVKQMIVCVNKMDDSSVNYGEARFNEIKEEVSNYLKKVGYKPAKVPFIPISGWNGDNMI++STNMAWYKGPTLLEALDNINPP  P   P   P
Sbjct:    1 MGKEKVHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKFEKEAAELGKSSFKYAWVLDKLKAERERGITIDIALWKFESPKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVASGTGEFEAGIGKDGQTREHALLAFTLGVKQMIVCVNKMDDSSVNYGEARFNEIKEEVSNYLKKVGYKPAKVPFIPISGWNGDNMIDRSTNMAWYKGPTLLEALDNINPPKRPTDKPLRLP 237
The following BLAST results are available for this feature:
BLAST of NO22G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21485.12.100e-12794.94translation elongation factor 1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01440NO22G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01440.1NO22G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01440.1.cds1NO22G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01440.1 ID=NO22G01440.1|Name=NO22G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
ATGGGAAAGGAGAAGACCCACGTGAACCTGGTCGTGATTGGCCACGTCGA
TGCCGGCAAGTCTACCACCACGGGCCACCTCATCTATAAGTGCGGCGGCA
TCGACAAGCGTGTGATCGAGAAGTTCGAGAAAGAGGCGGCCGAGATGGGC
AAGTCTTCTTTCAAGTACGCGTGGGTGCTGGACAAGCTCAAGGCTGAGCG
TGAGCGTGGTATCACCATTGATATCGCCCTCTGGAAGTTCGAGTCTCCCA
AGTACTACTTCACCATTATCGACGCCCCCGGCCACCGTGATTTCATCAAG
AACATGATTACCGGTACCTCCCAGGCTGATGTTGCCATCCTCATCGTCGC
CTCCGGGACGGGAGAGTTCGAGGCGGGCATTGGCAAGGATGGGCAGACCC
GCGAGCACGCCCTGTTGGCGTTTACCTTGGGTGTGAAGCAGATGATTGTG
TGCGTCAACAAAATGGACGACTCGTCTGTCAACTACGGCGAGGCCCGCTT
CAATGAGATCAAGGAGGAGGTGTCCAACTATCTCAAAAAGGTCGGATACA
AGCCCGCCAAGGTCCCCTTCATTCCCATCTCCGGCTGGAATGGCGACAAC
ATGATCGAGAAGTCTACCAACATGGCCTGGTACAAGGGCCCCACTCTCCT
GGAGGCCCTTGACAACATCAACCCCCCAAGCGCCCCACGGACAAGCCCCT
CCGCCTGCCCCTCCAGGACGTGTATAAGATCGGCGGCATTGGAACGGTCC
CCGTCGGCCGTGTGGAGACCGGTGTCCTGA
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protein sequence of NO22G01440.1

>NO22G01440.1-protein ID=NO22G01440.1-protein|Name=NO22G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MGKEKTHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKFEKEAAEMG
KSSFKYAWVLDKLKAERERGITIDIALWKFESPKYYFTIIDAPGHRDFIK
NMITGTSQADVAILIVASGTGEFEAGIGKDGQTREHALLAFTLGVKQMIV
CVNKMDDSSVNYGEARFNEIKEEVSNYLKKVGYKPAKVPFIPISGWNGDN
MIEKSTNMAWYKGPTLLEALDNINPPSAPRTSPSACPSRTCIRSAALERS
PSAVWRPVS*
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mRNA from alignment at chr22:425001..425780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01440.1 ID=NO22G01440.1|Name=NO22G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp|location=Sequence derived from alignment at chr22:425001..425780+ (Nannochloropsis oceanica)
ATGGGAAAGGAGAAGACCCACGTGAACCTGGTCGTGATTGGCCACGTCGA
TGCCGGCAAGTCTACCACCACGGGCCACCTCATCTATAAGTGCGGCGGCA
TCGACAAGCGTGTGATCGAGAAGTTCGAGAAAGAGGCGGCCGAGATGGGC
AAGTCTTCTTTCAAGTACGCGTGGGTGCTGGACAAGCTCAAGGCTGAGCG
TGAGCGTGGTATCACCATTGATATCGCCCTCTGGAAGTTCGAGTCTCCCA
AGTACTACTTCACCATTATCGACGCCCCCGGCCACCGTGATTTCATCAAG
AACATGATTACCGGTACCTCCCAGGCTGATGTTGCCATCCTCATCGTCGC
CTCCGGGACGGGAGAGTTCGAGGCGGGCATTGGCAAGGATGGGCAGACCC
GCGAGCACGCCCTGTTGGCGTTTACCTTGGGTGTGAAGCAGATGATTGTG
TGCGTCAACAAAATGGACGACTCGTCTGTCAACTACGGCGAGGCCCGCTT
CAATGAGATCAAGGAGGAGGTGTCCAACTATCTCAAAAAGGTCGGATACA
AGCCCGCCAAGGTCCCCTTCATTCCCATCTCCGGCTGGAATGGCGACAAC
ATGATCGAGAAGTCTACCAACATGGCCTGGTACAAGGGCCCCACTCTCCT
GGAGGCCCTTGACAACATCAACCCCCCAAGCGCCCCACGGACAAGCCCCT
CCGCCTGCCCCTCCAGGACGTGTATAAGATCGGCGGCATTGGAACGGTCC
CCGTCGGCCGTGTGGAGACCGGTGTCCTGA
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Coding sequence (CDS) from alignment at chr22:425001..425780+

>NO22G01440.1 ID=NO22G01440.1|Name=NO22G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr22:425001..425780+ (Nannochloropsis oceanica)
ATGGGAAAGGAGAAGACCCACGTGAACCTGGTCGTGATTGGCCACGTCGA
TGCCGGCAAGTCTACCACCACGGGCCACCTCATCTATAAGTGCGGCGGCA
TCGACAAGCGTGTGATCGAGAAGTTCGAGAAAGAGGCGGCCGAGATGGGC
AAGTCTTCTTTCAAGTACGCGTGGGTGCTGGACAAGCTCAAGGCTGAGCG
TGAGCGTGGTATCACCATTGATATCGCCCTCTGGAAGTTCGAGTCTCCCA
AGTACTACTTCACCATTATCGACGCCCCCGGCCACCGTGATTTCATCAAG
AACATGATTACCGGTACCTCCCAGGCTGATGTTGCCATCCTCATCGTCGC
CTCCGGGACGGGAGAGTTCGAGGCGGGCATTGGCAAGGATGGGCAGACCC
GCGAGCACGCCCTGTTGGCGTTTACCTTGGGTGTGAAGCAGATGATTGTG
TGCGTCAACAAAATGGACGACTCGTCTGTCAACTACGGCGAGGCCCGCTT
CAATGAGATCAAGGAGGAGGTGTCCAACTATCTCAAAAAGGTCGGATACA
AGCCCGCCAAGGTCCCCTTCATTCCCATCTCCGGCTGGAATGGCGACAAC
ATGATCGAGAAGTCTACCAACATGGCCTGGTACAAGGGCCCCACTCTCCT
GGAGGCCCTTGACAACATCAACCCCCCAAGCGCCCCACGGACAAGCCCCT
CCGCCTGCCCCTCCAGGACGTGTATAAGATCGGCGGCATTGGAACGGTCC
CCGTCGGCCGTGTGGAGACCGGTGTCCTGA
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Synonyms
Publications