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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:348640..351635 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01170.1 vs.
Match: EWM21499.1 (endonuclease exonuclease phosphatase family [Nannochloropsis gaditana]) HSP 1 Score: 354.4 bits (908), Expect = 9.000e-94 Identity = 189/345 (54.78%), Postives = 243/345 (70.43%), Query Frame = 0
Query: 54 RMSFSSTAAAGASSPPFSGRKVHQSALALLPDPATPLYSSIQATRQAHDKHFRRWPPHINILYPFVPESEFEVVAQVLHQALASFTPIEDDCIMARVGYFEHYKSSCTAWLAPQTPEAAAVSNITNVGRKDFRPTPHPGIIELQATCQSAVPHCSDLSSSFGGQFTPHLSLGQFRTKGDVQKFIDSLNWEAQSFPVRNLFLLSREGPHDTFCVRFIVPLGGLGEIIKVD---RPAFASLSVPPSTFKEGKNSTMKKNTGIPVTTIATHSLSPPDAEVDGSLLEGGGQILRVSVALATLLHKSLRIHSIRAGRNKPGLQPQHLAGVLLAAEISQSRLQHCVIGSTD 396
+MS STA S FSGRKVHQSALAL+PD + L+++IQ+ R++HDKH+RRWPPH+NI+YPFVPE EF+V A+VL +AL+SF I DDC MAR+GYFEH +SSCTAWLAPQ EA + P PHP II+LQA CQ+A+PHC+DL++SFGG+FTPHLS+GQF+ + + FIDS++W A+ FPVR L+LL+R GP D F VR+IV L G G + +V+ P A +V F + S KN P ++P + EVDGSLLEGGGQ+LR S+AL+ LL K LRI SIR+GR+KPGLQPQHLAGV L AEI +S ++ +GS +
Sbjct: 75 KMSAMSTADENLSDF-FSGRKVHQSALALMPDMDSSLFTAIQSIRRSHDKHYRRWPPHVNIIYPFVPEYEFDVAARVLQKALSSFAVI-DDCTMARMGYFEHGRSSCTAWLAPQ--EARLSDAELRHEEELASPAPHPRIIQLQAACQAAIPHCADLTASFGGRFTPHLSIGQFQDRKGAKDFIDSVDWVAEVFPVRQLYLLARNGPTDPFSVRYIVRLAG-GSVTRVEPGTLPRHAGATVADQGF--FRLSAGTKNATPPA------RINPAEVEVDGSLLEGGGQVLRTSLALSILLRKRLRISSIRSGRSKPGLQPQHLAGVRLVAEIGRSSVEGANLGSME 406
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01170.1 ID=NO22G01170.1|Name=NO22G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2996bp CAGGACCTGTCTTTTGGAGAGGCAGCCCGGCCCATATCGATGCGACGTCC CGACGGCATCTTGACAGGAAGGAGCAGGGGCCTAAACACGGTTTTTGTTT TGCCTTCACGCTGACCTCCTCTTTTATCCCCCTCACCCTTCTCCTCCTGG CCCTGTGTGGGTCGTCCGGGCACTTTGCCTGATCGAAAAACCTGTCAAAG TCGCTGGTAAAACTCGGACAAGAAATAAGGGATGAATATGCAACATTTTA TTGTTGGAAGGCTTCCCCTCGTATGCCCCTCGTATGCAAGTCCTATAGGA CGCGGGTTGCATGCGATAGTTCTAGAGGGATGTAGGAACGAACGCGATAG TTCTAGAGGGATGTAGGAACGGGAAAAAGAACTAAAGACGGGATTTTCAA AGCCCAAAGCCCCCCTCTCCCTCAGACTCCGCTCCCTCTTTCCCCTCCAA GTCGCAGTCCCTTCCCAAAAACCTCCTCATTACCACCGCAGCACCAAAAG ATCAAGCACACACAACTCATGATGCCCACTTATCTTGACGTTACACAGTG AGACCGAATCACCATCAGCCTCCTGCATGCTTCAGCGGGAAGGAAGCAAA ACTAGGAAGCGTAGCGGCCGAAGCAGCAGCACTACCATCACGGCCGCCCT CCATACGACCTTGGCCCTTACTTGTAGCGGCTTTCACCGTCGACCCTTCA TCCAAGGCCGCCCCATTATAACCAGCACATTTTTGCGCATGTCCTTTTCA TCAACCGCGGCGGCCGGAGCTTCATCTCCTCCGTTCTCGGGACGCAAGGT TCATCAATCAGCTCTTGCTCTCCTTCCCGATCCTGCCACACCGCTCTACT CCTCTATCCAGGCGACGCGACAGGCGCACGATAAACACTTCAGACGCTGG CCTCCACACATAAACATTCTTTACCCTTTTGTACCCGAATCTGAGTTCGA GGTAGTGGCGCAGGTCTTGCACCAGGCTCTGGCTTCCTTCACCCCTATTG AGGACGACTGCATTATGGCCCGTGTTGGGTACTTTGAGCACTACAAATCC TCTTGTACGGCCTGGCTGGCCCCACAGACACCAGAGGCAGCCGCAGTATC AAACATCACAAATGTGGGCAGGAAAGACTTCCGCCCAACGCCCCACCCAG GCATTATTGAGCTGCAAGCAACGTGCCAGTCGGCGGTCCCACATTGCAGC GATCTCTCTTCTTCCTTTGGAGGACAATTCACGCCACATCTCTCCCTCGG TCAGTTCCGTACTAAGGGAGACGTTCAAAAGTTCATTGACTCGCTGAATT GGGAGGCGCAATCCTTTCCAGTTCGTAACCTCTTTCTTCTATCGAGAGAA GGGCCGCATGACACTTTCTGTGTCCGGTTTATCGTGCCCTTGGGTGGCCT CGGCGAAATCATCAAAGTAGACCGTCCTGCTTTTGCTTCTCTTTCTGTGC CTCCTTCCACTTTTAAAGAAGGAAAAAATAGCACTATGAAGAAGAATACT GGCATCCCTGTGACGACGATCGCGACGCATTCTCTTTCTCCGCCAGACGC TGAGGTCGACGGAAGCTTGCTTGAAGGCGGGGGGCAGATCTTGCGTGTCT CCGTAGCTCTTGCAACACTACTCCACAAATCTCTACGTATCCATTCCATT CGAGCAGGCCGAAACAAACCAGGCCTCCAGCCACAGCACTTGGCGGGAGT CTTGCTGGCTGCGGAGATAAGTCAATCGCGTCTCCAACATTGTGTCATTG GCAGCACGGACATGAGTATCTACCCCCCGGCCCCTACTGCAATGTCCAGT CTACCGCGGTGTAGTTTCGAAGCGGGCCCAGGAACGGCAGGCAGTGTGAC GTTGCTCTTACAAGCATCACTACCTCTCCTCGCCTTTTACTCGACCTTTC TCCCCACTGCCTCGCCTCCCCCTATCAAACTGACTCTTCGAGGAGGTACC ACCGTCTCTCACTCTCCCTCCATTGACTACTTCATTCACATCACCGCCCC CCTCCTCGCTCGCATTGGCCTGCAAACACATACCAGTATTATTCGCCGAG GATTTTTCCCTCAGGGGGGAGGTCAGATCGAAGTGAACGTCACACCGCGT CGGTCCACCTCTCCTCTGACACCACTTGTCCTCACTGATCCCGGACAACC GACACGCATCCTTGCTTTCGTCGCTGGGATTGTCAACGCGGGAGGTGAAG CTCAAGCACAGATATTGGACGGATTGCAAGCCACTCTGGCTATGGCGGTG GGAGAGGTTTTTGGGCAATCCTTGCCTTTGAAGTTCGAAGATAATGTGTG GACGCAATGTGCTCCTCACACAGAGCAGCAAAGTCACGGTCGAGGAGGAG GAGGAGGGGGAGAAGGAGAAGAAAGAGGAGCGGGATGGGGTACGGGATCG AACAAACGTGCCCGCACGAGGCCGAAAAGGGAGGTGGTGCACGTGCTATT GGTACTGGAAACGAGCACGGGTTGTCGCTTAGGCGCCGACGTCTTGCTGG ACGACTTACGGCGCTTCAACAATGCCAGAGGTGGTGGGCATGAGGGTATT GAGAAGGCTGAGCAACGACATTTCTGTCACACTCTTGCCAGCACCCTTCA CGGATACCATAGTGCGGGAGCGTGCGTAGATGAGCACGCACTGGATCAGA TTTTGATATACATGGCCTTGGCCAAGGGAACTTCTCGCGTGCGTGGACCT CCCCGTGTAATGATGACTTCGAAGCATATGCCAACAGCCATTCATGTCAT ACAGAAACTCCTGGGTGTTGCTTTTACTAGCGCGATGGAGGAAGGGGAGG ACGGCACGGTAGTCATCGAGGTGGCAGAAGGACGGGCTTTCACCGGAGCA GGGGATGTTGAGGCCGTATCGTAATATAAATCCGTCCATTCGAGAACGGT GGCTTGAGTCTTTTCCGATGGTGGATGAAGAGGGGATACAGGGGGTGGGA AGATTGACAGATTGACACCTCATTTTTGATGTGAGACAAAGATCGA back to topprotein sequence of NO22G01170.1 >NO22G01170.1-protein ID=NO22G01170.1-protein|Name=NO22G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=766bp MLQREGSKTRKRSGRSSSTTITAALHTTLALTCSGFHRRPFIQGRPIITS TFLRMSFSSTAAAGASSPPFSGRKVHQSALALLPDPATPLYSSIQATRQA HDKHFRRWPPHINILYPFVPESEFEVVAQVLHQALASFTPIEDDCIMARV GYFEHYKSSCTAWLAPQTPEAAAVSNITNVGRKDFRPTPHPGIIELQATC QSAVPHCSDLSSSFGGQFTPHLSLGQFRTKGDVQKFIDSLNWEAQSFPVR NLFLLSREGPHDTFCVRFIVPLGGLGEIIKVDRPAFASLSVPPSTFKEGK NSTMKKNTGIPVTTIATHSLSPPDAEVDGSLLEGGGQILRVSVALATLLH KSLRIHSIRAGRNKPGLQPQHLAGVLLAAEISQSRLQHCVIGSTDMSIYP PAPTAMSSLPRCSFEAGPGTAGSVTLLLQASLPLLAFYSTFLPTASPPPI KLTLRGGTTVSHSPSIDYFIHITAPLLARIGLQTHTSIIRRGFFPQGGGQ IEVNVTPRRSTSPLTPLVLTDPGQPTRILAFVAGIVNAGGEAQAQILDGL QATLAMAVGEVFGQSLPLKFEDNVWTQCAPHTEQQSHGRGGGGGGEGEER GAGWGTGSNKRARTRPKREVVHVLLVLETSTGCRLGADVLLDDLRRFNNA RGGGHEGIEKAEQRHFCHTLASTLHGYHSAGACVDEHALDQILIYMALAK GTSRVRGPPRVMMTSKHMPTAIHVIQKLLGVAFTSAMEEGEDGTVVIEVA EGRAFTGAGDVEAVS* back to topmRNA from alignment at chr22:348640..351635+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01170.1 ID=NO22G01170.1|Name=NO22G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2996bp|location=Sequence derived from alignment at chr22:348640..351635+ (Nannochloropsis oceanica) CAGGACCTGTCTTTTGGAGAGGCAGCCCGGCCCATATCGATGCGACGTCC
CGACGGCATCTTGACAGGAAGGAGCAGGGGCCTAAACACGGTTTTTGTTT
TGCCTTCACGCTGACCTCCTCTTTTATCCCCCTCACCCTTCTCCTCCTGG
CCCTGTGTGGGTCGTCCGGGCACTTTGCCTGATCGAAAAACCTGTCAAAG
TCGCTGGTAAAACTCGGACAAGAAATAAGGGATGAATATGCAACATTTTA
TTGTTGGAAGGCTTCCCCTCGTATGCCCCTCGTATGCAAGTCCTATAGGA
CGCGGGTTGCATGCGATAGTTCTAGAGGGATGTAGGAACGAACGCGATAG
TTCTAGAGGGATGTAGGAACGGGAAAAAGAACTAAAGACGGGATTTTCAA
AGCCCAAAGCCCCCCTCTCCCTCAGACTCCGCTCCCTCTTTCCCCTCCAA
GTCGCAGTCCCTTCCCAAAAACCTCCTCATTACCACCGCAGCACCAAAAG
ATCAAGCACACACAACTCATGATGCCCACTTATCTTGACGTTACACAGTG
AGACCGAATCACCATCAGCCTCCTGCATGCTTCAGCGGGAAGGAAGCAAA
ACTAGGAAGCGTAGCGGCCGAAGCAGCAGCACTACCATCACGGCCGCCCT
CCATACGACCTTGGCCCTTACTTGTAGCGGCTTTCACCGTCGACCCTTCA
TCCAAGGCCGCCCCATTATAACCAGCACATTTTTGCGCATGTCCTTTTCA
TCAACCGCGGCGGCCGGAGCTTCATCTCCTCCGTTCTCGGGACGCAAGGT
TCATCAATCAGCTCTTGCTCTCCTTCCCGATCCTGCCACACCGCTCTACT
CCTCTATCCAGGCGACGCGACAGGCGCACGATAAACACTTCAGACGCTGG
CCTCCACACATAAACATTCTTTACCCTTTTGTACCCGAATCTGAGTTCGA
GGTAGTGGCGCAGGTCTTGCACCAGGCTCTGGCTTCCTTCACCCCTATTG
AGGACGACTGCATTATGGCCCGTGTTGGGTACTTTGAGCACTACAAATCC
TCTTGTACGGCCTGGCTGGCCCCACAGACACCAGAGGCAGCCGCAGTATC
AAACATCACAAATGTGGGCAGGAAAGACTTCCGCCCAACGCCCCACCCAG
GCATTATTGAGCTGCAAGCAACGTGCCAGTCGGCGGTCCCACATTGCAGC
GATCTCTCTTCTTCCTTTGGAGGACAATTCACGCCACATCTCTCCCTCGG
TCAGTTCCGTACTAAGGGAGACGTTCAAAAGTTCATTGACTCGCTGAATT
GGGAGGCGCAATCCTTTCCAGTTCGTAACCTCTTTCTTCTATCGAGAGAA
GGGCCGCATGACACTTTCTGTGTCCGGTTTATCGTGCCCTTGGGTGGCCT
CGGCGAAATCATCAAAGTAGACCGTCCTGCTTTTGCTTCTCTTTCTGTGC
CTCCTTCCACTTTTAAAGAAGGAAAAAATAGCACTATGAAGAAGAATACT
GGCATCCCTGTGACGACGATCGCGACGCATTCTCTTTCTCCGCCAGACGC
TGAGGTCGACGGAAGCTTGCTTGAAGGCGGGGGGCAGATCTTGCGTGTCT
CCGTAGCTCTTGCAACACTACTCCACAAATCTCTACGTATCCATTCCATT
CGAGCAGGCCGAAACAAACCAGGCCTCCAGCCACAGCACTTGGCGGGAGT
CTTGCTGGCTGCGGAGATAAGTCAATCGCGTCTCCAACATTGTGTCATTG
GCAGCACGGACATGAGTATCTACCCCCCGGCCCCTACTGCAATGTCCAGT
CTACCGCGGTGTAGTTTCGAAGCGGGCCCAGGAACGGCAGGCAGTGTGAC
GTTGCTCTTACAAGCATCACTACCTCTCCTCGCCTTTTACTCGACCTTTC
TCCCCACTGCCTCGCCTCCCCCTATCAAACTGACTCTTCGAGGAGGTACC
ACCGTCTCTCACTCTCCCTCCATTGACTACTTCATTCACATCACCGCCCC
CCTCCTCGCTCGCATTGGCCTGCAAACACATACCAGTATTATTCGCCGAG
GATTTTTCCCTCAGGGGGGAGGTCAGATCGAAGTGAACGTCACACCGCGT
CGGTCCACCTCTCCTCTGACACCACTTGTCCTCACTGATCCCGGACAACC
GACACGCATCCTTGCTTTCGTCGCTGGGATTGTCAACGCGGGAGGTGAAG
CTCAAGCACAGATATTGGACGGATTGCAAGCCACTCTGGCTATGGCGGTG
GGAGAGGTTTTTGGGCAATCCTTGCCTTTGAAGTTCGAAGATAATGTGTG
GACGCAATGTGCTCCTCACACAGAGCAGCAAAGTCACGGTCGAGGAGGAG
GAGGAGGGGGAGAAGGAGAAGAAAGAGGAGCGGGATGGGGTACGGGATCG
AACAAACGTGCCCGCACGAGGCCGAAAAGGGAGGTGGTGCACGTGCTATT
GGTACTGGAAACGAGCACGGGTTGTCGCTTAGGCGCCGACGTCTTGCTGG
ACGACTTACGGCGCTTCAACAATGCCAGAGGTGGTGGGCATGAGGGTATT
GAGAAGGCTGAGCAACGACATTTCTGTCACACTCTTGCCAGCACCCTTCA
CGGATACCATAGTGCGGGAGCGTGCGTAGATGAGCACGCACTGGATCAGA
TTTTGATATACATGGCCTTGGCCAAGGGAACTTCTCGCGTGCGTGGACCT
CCCCGTGTAATGATGACTTCGAAGCATATGCCAACAGCCATTCATGTCAT
ACAGAAACTCCTGGGTGTTGCTTTTACTAGCGCGATGGAGGAAGGGGAGG
ACGGCACGGTAGTCATCGAGGTGGCAGAAGGACGGGCTTTCACCGGAGCA
GGGGATGTTGAGGCCGTATCGTAATATAAATCCGTCCATTCGAGAACGGT
GGCTTGAGTCTTTTCCGATGGTGGATGAAGAGGGGATACAGGGGGTGGGA
AGATTGACAGATTGACACCTCATTTTTGATGTGAGACAAAGATCGA back to topCoding sequence (CDS) from alignment at chr22:348640..351635+ >NO22G01170.1 ID=NO22G01170.1|Name=NO22G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at chr22:348640..351635+ (Nannochloropsis oceanica) ATGCTTCAGCGGGAAGGAAGCAAAACTAGGAAGCGTAGCGGCCGAAGCAG CAGCACTACCATCACGGCCGCCCTCCATACGACCTTGGCCCTTACTTGTA GCGGCTTTCACCGTCGACCCTTCATCCAAGGCCGCCCCATTATAACCAGC ACATTTTTGCGCATGTCCTTTTCATCAACCGCGGCGGCCGGAGCTTCATC TCCTCCGTTCTCGGGACGCAAGGTTCATCAATCAGCTCTTGCTCTCCTTC CCGATCCTGCCACACCGCTCTACTCCTCTATCCAGGCGACGCGACAGGCG CACGATAAACACTTCAGACGCTGGCCTCCACACATAAACATTCTTTACCC TTTTGTACCCGAATCTGAGTTCGAGGTAGTGGCGCAGGTCTTGCACCAGG CTCTGGCTTCCTTCACCCCTATTGAGGACGACTGCATTATGGCCCGTGTT GGGTACTTTGAGCACTACAAATCCTCTTGTACGGCCTGGCTGGCCCCACA GACACCAGAGGCAGCCGCAGTATCAAACATCACAAATGTGGGCAGGAAAG ACTTCCGCCCAACGCCCCACCCAGGCATTATTGAGCTGCAAGCAACGTGC CAGTCGGCGGTCCCACATTGCAGCGATCTCTCTTCTTCCTTTGGAGGACA ATTCACGCCACATCTCTCCCTCGGTCAGTTCCGTACTAAGGGAGACGTTC AAAAGTTCATTGACTCGCTGAATTGGGAGGCGCAATCCTTTCCAGTTCGT AACCTCTTTCTTCTATCGAGAGAAGGGCCGCATGACACTTTCTGTGTCCG GTTTATCGTGCCCTTGGGTGGCCTCGGCGAAATCATCAAAGTAGACCGTC CTGCTTTTGCTTCTCTTTCTGTGCCTCCTTCCACTTTTAAAGAAGGAAAA AATAGCACTATGAAGAAGAATACTGGCATCCCTGTGACGACGATCGCGAC GCATTCTCTTTCTCCGCCAGACGCTGAGGTCGACGGAAGCTTGCTTGAAG GCGGGGGGCAGATCTTGCGTGTCTCCGTAGCTCTTGCAACACTACTCCAC AAATCTCTACGTATCCATTCCATTCGAGCAGGCCGAAACAAACCAGGCCT CCAGCCACAGCACTTGGCGGGAGTCTTGCTGGCTGCGGAGATAAGTCAAT CGCGTCTCCAACATTGTGTCATTGGCAGCACGGACATGAGTATCTACCCC CCGGCCCCTACTGCAATGTCCAGTCTACCGCGGTGTAGTTTCGAAGCGGG CCCAGGAACGGCAGGCAGTGTGACGTTGCTCTTACAAGCATCACTACCTC TCCTCGCCTTTTACTCGACCTTTCTCCCCACTGCCTCGCCTCCCCCTATC AAACTGACTCTTCGAGGAGGTACCACCGTCTCTCACTCTCCCTCCATTGA CTACTTCATTCACATCACCGCCCCCCTCCTCGCTCGCATTGGCCTGCAAA CACATACCAGTATTATTCGCCGAGGATTTTTCCCTCAGGGGGGAGGTCAG ATCGAAGTGAACGTCACACCGCGTCGGTCCACCTCTCCTCTGACACCACT TGTCCTCACTGATCCCGGACAACCGACACGCATCCTTGCTTTCGTCGCTG GGATTGTCAACGCGGGAGGTGAAGCTCAAGCACAGATATTGGACGGATTG CAAGCCACTCTGGCTATGGCGGTGGGAGAGGTTTTTGGGCAATCCTTGCC TTTGAAGTTCGAAGATAATGTGTGGACGCAATGTGCTCCTCACACAGAGC AGCAAAGTCACGGTCGAGGAGGAGGAGGAGGGGGAGAAGGAGAAGAAAGA GGAGCGGGATGGGGTACGGGATCGAACAAACGTGCCCGCACGAGGCCGAA AAGGGAGGTGGTGCACGTGCTATTGGTACTGGAAACGAGCACGGGTTGTC GCTTAGGCGCCGACGTCTTGCTGGACGACTTACGGCGCTTCAACAATGCC AGAGGTGGTGGGCATGAGGGTATTGAGAAGGCTGAGCAACGACATTTCTG TCACACTCTTGCCAGCACCCTTCACGGATACCATAGTGCGGGAGCGTGCG TAGATGAGCACGCACTGGATCAGATTTTGATATACATGGCCTTGGCCAAG GGAACTTCTCGCGTGCGTGGACCTCCCCGTGTAATGATGACTTCGAAGCA TATGCCAACAGCCATTCATGTCATACAGAAACTCCTGGGTGTTGCTTTTA CTAGCGCGATGGAGGAAGGGGAGGACGGCACGGTAGTCATCGAGGTGGCA GAAGGACGGGCTTTCACCGGAGCAGGGGATGTTGAGGCCGTATCGTAA back to top
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