NO22G01160.3, NO22G01160.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01160.3
Unique NameNO22G01160.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1714
Alignment locationchr22:346790..348635 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:346790..348635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01160.3 vs.
Match: EWM21501.1 (abc transporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 433.7 bits (1114), Expect = 3.600e-118
Identity = 207/231 (89.61%), Postives = 221/231 (95.67%), Query Frame = 0 
Query:    1 MHAFRDTKLNLVRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVTVSLDVVVRQDLLRWLRKETEERGATVLYATHIFDGLDDWPSHLHFMTNQGKTGWQGKLEELDHYQELRKAGDPGPLLRIAERWLRTEIDVQKRQKRQEKELGAQAHDAKLARSTLSGGGYAAGRMYDVFHE 232
            MHAFRDTKLNL+RAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPF+ILLLDEVTVSLDVVVRQDLLRWLR+ETE RGATV+YATHIFDGLDDWPSHLHFMTNQG+TGWQGKLE+LDHY+ELR+AGDPGPLLRIAERWLRTE + QKR+K +EKELG Q  D KL++ TLSGGG+AAGRMYD FHE
Sbjct:   87 MHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYDHFHE 317
The following BLAST results are available for this feature:
BLAST of NO22G01160.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21501.13.600e-11889.61abc transporter family protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01160NO22G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01160.3NO22G01160.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01160.3.cds1NO22G01160.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01160.3 ID=NO22G01160.3|Name=NO22G01160.3|organism=Nannochloropsis oceanica|type=mRNA|length=1714bp
ATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCATCGTCG
CAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTCGCACAG
CGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGACCCCCC
AAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGGTGCCAT
AGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTCCAACCA
ACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATGGCCACC
AACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCCTTTCCT
GTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATGGGGACC
GCCAGGTTTTACAGGGACTTAACATGCGTCTCAAGAAGGGCAGCCGGTAT
GTCGAAGGGTGAAGTGGAGAGAGTGCGGATGGTGTTGTGTGTCTGGGCAG
GTGTGTTGCTTCTTAGTAACGCATACGTCACTCTCCTCACCACTACCCAC
CCAGTTACGCAGTATATAATGGTCAGGGTTACCTCGGTGCTGACGTATGT
GTAATCTCTCTGTTGCTATATAAATGTGACGTCGTGTCTGTGTCTATCCA
CGGTGCGCATGTGGCGAGTGGCCATTCTAAAAACTTGGATTCCTCCTATT
CCCACCCAAACCCTCCCCCCGCAGCTGCCTTCTCATCGGTGCCAACGGCG
CCGGCAAGAGCACGCTACTCCGTATTCTGGGCGGGCGGCACTTGACCAAG
CCGGACGATGCAGTGACCGTGCTGGGAATGCACGCCTTCCGCGACACCAA
GTTGAATCTAGTTCGTGCCTACATGGATACGGACTGGGGCATGCGCACGG
TGGCCTTTGCCGGCTACGGGGTGCCCTTGCAGGCGGACATCCCCGTGACG
GGCATGATGAGCAAATTGCAGAGCCAGCACCCGGAGAGGCGGGATGAGCT
GTTGGAGTTACTGGGCATTGATCCCGAATGGAGGATGAACCGCGTCTCAG
ACGGACAACGACGACGCGTCCAGTTGTTCTTGGGCTTGGTCCGACCGTTC
GACATTCTCCTGCTCGACGAGGTGACTGTGTCCTTGGACGTCGTAGTGCG
TCAGGACCTGCTGCGGTGGTTGCGGAAAGAGACCGAGGAGCGGGGGGCGA
CCGTGTTGTACGCCACGCACATTTTCGACGGCCTCGACGATTGGCCCTCA
CACTTGCACTTCATGACCAACCAGGGCAAAACAGGCTGGCAGGGCAAGTT
AGAGGAGCTGGATCATTATCAGGAACTGCGCAAGGCAGGGGATCCGGGCC
CTCTGTTGCGCATCGCGGAGAGATGGTTACGAACGGAAATAGACGTGCAA
AAGCGCCAGAAAAGACAAGAGAAGGAGCTTGGGGCTCAGGCGCATGATGC
CAAGCTGGCTCGGTCCACGTTATCGGGAGGGGGGTACGCGGCAGGTAGAA
TGTATGACGTATTTCATGAGATGAAGTAAACAATGAAAGGGTGGGGACAA
AATTAAAGAGGTGACAGAGTGCAGATAGAGCAGTTTTATGCAAGATAACG
CATTCAAACACACACGGGATCATTATCCTTGAGAGGGAAAACTGACCGAA
AGAACCAATTTCCAACTAAGCATACAAATCGAAGGAAACTTGTTGTAGGT
CCCCAAAATAAACG
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protein sequence of NO22G01160.3

>NO22G01160.3-protein ID=NO22G01160.3-protein|Name=NO22G01160.3|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHAFRDTKLNLVRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQ
HPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVT
VSLDVVVRQDLLRWLRKETEERGATVLYATHIFDGLDDWPSHLHFMTNQG
KTGWQGKLEELDHYQELRKAGDPGPLLRIAERWLRTEIDVQKRQKRQEKE
LGAQAHDAKLARSTLSGGGYAAGRMYDVFHEMK*
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mRNA from alignment at chr22:346790..348635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01160.3 ID=NO22G01160.3|Name=NO22G01160.3|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at chr22:346790..348635+ (Nannochloropsis oceanica)
ATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCATCGTCG
CAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTCGCACAG
CGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGACCCCCC
AAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGGTGCCAT
AGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTCCAACCA
ACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATGGCCACC
AACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCCTTTCCT
GTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATGGGGACC
GCCAGGTAAGCACAAAGGGGCATCAAGAAAGCTTAAGCTCGGCTCGTGAT
TCGGCAAGTGCGTGGTGGTACGGAGCACGCTGCTTGCCGAGCCCCTTCTC
ATCGCCTTCTCGGCACCCTCTGTCCACCAAACCATAGGTTTTACAGGGAC
TTAACATGCGTCTCAAGAAGGGCAGCCGGTATGTCGAAGGGTGAAGTGGA
GAGAGTGCGGATGGTGTTGTGTGTCTGGGCAGGTGTGTTGCTTCTTAGTA
ACGCATACGTCACTCTCCTCACCACTACCCACCCAGTTACGCAGTATATA
ATGGTCAGGGTTACCTCGGTGCTGACGTATGTGTAATCTCTCTGTTGCTA
TATAAATGTGACGTCGTGTCTGTGTCTATCCACGGTGCGCATGTGGCGAG
TGGCCATTCTAAAAACTTGGATTCCTCCTATTCCCACCCAAACCCTCCCC
CCGCAGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTAC
TCCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACC
GTGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGC
CTACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACG
GGGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTG
CAGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCAT
TGATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCG
TCCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGAC
GAGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTG
GTTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGC
ACATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACC
AACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTA
TCAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGG
AGAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAA
GAGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCAC
GTTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATG
AGATGAAGTAAACAATGAAAGGGTGGGGACAAAATTAAAGAGGTGACAGA
GTGCAGATAGAGCAGTTTTATGCAAGATAACGCATTCAAACACACACGGG
ATCATTATCCTTGAGAGGGAAAACTGACCGAAAGAACCAATTTCCAACTA
AGCATACAAATCGAAGGAAACTTGTTGTAGGTCCCCAAAATAAACG
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Coding sequence (CDS) from alignment at chr22:346790..348635+

>NO22G01160.3 ID=NO22G01160.3|Name=NO22G01160.3|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr22:346790..348635+ (Nannochloropsis oceanica)
ATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGCCTACATGGA
TACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACGGGGTGCCCT
TGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTGCAGAGCCAG
CACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCATTGATCCCGA
ATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCGTCCAGTTGT
TCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGACGAGGTGACT
GTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTGGTTGCGGAA
AGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGCACATTTTCG
ACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACCAACCAGGGC
AAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTATCAGGAACT
GCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGGAGAGATGGT
TACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAAGAGAAGGAG
CTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCACGTTATCGGG
AGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATGAGATGAAGT
AA
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Synonyms
Publications