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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr22 | genome | chr22:337935..340388 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01090.1 vs.
Match: XP_005853625.1 (hypothetical protein NGA_0430201 [Nannochloropsis gaditana CCMP526]; EKU22736.1 hypothetical protein NGA_0430201 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 477.2 bits (1227), Expect = 5.900e-131 Identity = 261/443 (58.92%), Postives = 316/443 (71.33%), Query Frame = 0
Query: 1 MPAPGPPSAATTVVNAGPPLQPPAFAPKTICVAGTYDGGIVGWEVQRRTQDATGPAKPAALKMTFAYTPHQGSVRSLAVPRGGAKAGLLLVSGGMDEHIRMYDLRKRAEAGELLHHKGTITALGFVGSSHLLSGSEDGMVCIWRVYDWSLLHILGGHKGAVTAVALHPSGKLALSTGRDRSLRLWDLVKGRCAYITKLEVVAESVKWSEDGEAYVLLLGDRRLEVRRTADNKPTAILVHPSRITALTFLPSSSSFSSSD---SYEEEKEKEKGKKQQHVLTACDDLQLRIVDGASGAIISSIDVTPFCGRIKEAVLL-HGSSSSGEGGREVVTASSNGKIVIWSINAAGTVVRPGPRTSLGECVRITCLAAYAVSEGGAGTEAAAAAAGLAQVNKRKKRKRKHKEEVKEGGEEVVLGHDRGMLRHEKMLKQHKKDRASKGSSG 440
MP P AA + ++ P+ P + + ICVAGTYDGGI GWE+QR Q+ T LKM FAYTPHQGSVRSLA+P+GG KAG LLVSGG+DEHIRMYDLRKRAE GELLHHKGTITALGFVGSSHLLSGSEDG VCIWRVYDWSLLHILGGHKGA+TAVA+HPSGKLALS+GRDRSLRLWDLV+GRCAYITKLE V E+VKWS DG Y L +GDRRLEVRR +DNKPTAI HP+R+TA+ FLP++++ +D S E E+ HV+TACDD LR+VDG +G+++S + P CGRIKEAV+ + + + RE+VTASS+GKI++W + AGT V GP +LG VRITCLAAYA G + A++G + +KKRKR EE KE +G DR R + ++ K +R + G
Sbjct: 1 MPVPPLFPAAAAIGSSLLPIFPTS---RYICVAGTYDGGIAGWELQREGQNQT-----TGLKMIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTITALGFVGSSHLLSGSEDGAVCIWRVYDWSLLHILGGHKGAITAVAIHPSGKLALSSGRDRSLRLWDLVRGRCAYITKLEAVVETVKWSGDGSVYALQVGDRRLEVRRASDNKPTAIATHPARVTAIAFLPAAAAAPCADEAKSLEISAAIEQQAPMHHVVTACDDGMLRVVDGDTGSVLSCTETGPHCGRIKEAVVWGNRALPFWQQSRELVTASSDGKILVWRVGPAGTQVEVGPGAALGAGVRITCLAAYA---AGEAVDEGRASSGTSLGKNKKKRKRVRGEETKEAN----MGPDRAAPRKGETARKSKGNRHRSANRG 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01090.1 ID=NO22G01090.1|Name=NO22G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2303bp
GGATGCCTGGGTGAGATGGAGGACGGATGGGATAGATGGAGTAGGATGTG
AGAGGATAGGCAGAAAGGCACAATTTGACCAGAGGTCCTTGAGCTGTAAT
GGCTGGTCCCACTATAAAGGCGTCTGTTGTCGCTCTGTCTGGGTGGTGGG
AGCGTGTGGGCGTGGTCGTGGTGGCACAAAGGAGCGTGGTTCATGATGCA
AGCACGACCTCCTTCTCTTGACGAGCACCACCACAATCAAGCCTTCATCC
ACCCACCACCCGCAGTCCTTGTTAGAGGAGGCAAAAATGTTCTAGTATTA
CACATGAGGTGGAAGAGGGGAGTGAGGGTGGGTCCTCGAGGCCAAAGAAT
TGTGCAACAGGTAGCGAAAGAAGAAGAGGACGCCTGGTGCTGCTTGTGTG
GTGTTGGGTGGAGGGCAGATGGGAGGACGGAAGAAGAATGAAACTTTGCG
ACCTCAACGAGGATATTGGCCAGTGTTCCATAAGCTCTTCGCCCGCTTTG
TGCTCTGTCTAGTGCTTGTGCTTTGTGAGACGCGGGGGAAACGGGCTAGC
CTCCTTACCGGCCACCCATCAGACCCGCCTTGATTGGTTGACACGCCTCT
ACAGCGCTCTCCCCTCCCTCTCTCCTCACAGATCACTAATGCCGGCCCCT
GGACCTCCTAGTGCAGCAACGACCGTCGTTAATGCCGGGCCTCCTTTACA
GCCACCTGCTTTTGCGCCCAAGACAATTTGCGTAGCTGGTACCTATGACG
GAGGCATTGTTGGTTGGGAAGTCCAGCGTAGGACCCAAGACGCAACAGGG
CCAGCAAAACCCGCGGCGCTCAAGATGACCTTCGCCTACACCCCCCACCA
AGGCAGCGTCCGTTCCCTTGCCGTACCCAGGGGAGGTGCGAAAGCAGGCC
TCCTCCTTGTGTCGGGCGGAATGGACGAACACATCCGCATGTACGACCTG
CGAAAAAGAGCGGAGGCCGGAGAGCTTCTCCACCATAAGGGCACCATCAC
CGCCCTTGGCTTCGTGGGGTCATCCCACTTGCTGAGCGGAAGCGAGGATG
GCATGGTTTGCATTTGGCGTGTGTACGATTGGAGTTTGTTGCACATTTTA
GGAGGGCATAAAGGAGCTGTCACTGCGGTGGCTTTACATCCCTCGGGAAA
GCTGGCCCTGTCCACCGGGCGAGATCGGAGTTTACGTCTCTGGGATTTAG
TCAAAGGCCGGTGTGCATATATCACCAAGTTGGAGGTAGTGGCGGAGAGC
GTGAAATGGTCGGAGGACGGGGAGGCATATGTCTTGCTGTTGGGGGATCG
TCGGTTGGAAGTTCGGCGGACGGCTGATAACAAGCCTACGGCCATCCTGG
TCCACCCATCGCGGATTACCGCTCTGACATTCCTTCCTTCCTCCTCCTCT
TTCTCATCTTCGGATTCTTACGAGGAGGAGAAGGAGAAGGAAAAAGGAAA
GAAGCAGCAGCATGTGTTAACAGCGTGCGATGACTTGCAGCTTCGGATTG
TGGATGGAGCGAGTGGAGCTATCATCTCCAGTATAGATGTCACCCCCTTC
TGTGGGCGAATCAAGGAAGCCGTGCTCTTGCACGGTAGCAGTAGCAGTGG
GGAGGGAGGAAGGGAGGTAGTGACGGCCTCATCGAATGGGAAGATTGTTA
TTTGGTCGATCAACGCCGCAGGCACTGTCGTACGGCCTGGCCCCAGAACT
AGTCTCGGAGAGTGCGTGCGTATCACTTGCCTAGCCGCCTACGCAGTCTC
GGAAGGGGGGGCGGGTACAGAAGCAGCTGCGGCGGCTGCGGGACTTGCGC
AGGTGAACAAGCGAAAGAAACGGAAGCGTAAACATAAAGAGGAGGTGAAG
GAGGGGGGCGAAGAAGTGGTGCTGGGGCATGATAGGGGGATGCTCAGGCA
CGAGAAAATGTTGAAACAGCATAAAAAGGACAGGGCGAGCAAAGGCTCGA
GTGGGGTATCGCCATTTAAACAGAAAGAACCTATGGGCGAAGTGGGCAGC
AGCATTAGGGACGACAGCAGCAAGATTAGAGGGGAGAGAGCGAGGAAACC
GCAACAGCAGCAGCAGCAGCACCAAGAGTCAAGCAAGAGTCAAGCAGGTT
TGTAGATCGTACGCAGGTCAATAGCTATGACATTTTTTTTTAGAAAAAGC
AGCACTATCAACAAGATAACGGGAAAAAAACGAGGAAGCCTTCTGCTGTT
AAGACTAGGAGCGGTGTCGTGAGTTTCTGACATTGAAATCAACTAAAAGT
ACCGGGGGAGGGAGTGGAATGAGAAAAGAAAAACAGCTAGTATTTAATGA
ATC back to topprotein sequence of NO22G01090.1 >NO22G01090.1-protein ID=NO22G01090.1-protein|Name=NO22G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MPAPGPPSAATTVVNAGPPLQPPAFAPKTICVAGTYDGGIVGWEVQRRTQ
DATGPAKPAALKMTFAYTPHQGSVRSLAVPRGGAKAGLLLVSGGMDEHIR
MYDLRKRAEAGELLHHKGTITALGFVGSSHLLSGSEDGMVCIWRVYDWSL
LHILGGHKGAVTAVALHPSGKLALSTGRDRSLRLWDLVKGRCAYITKLEV
VAESVKWSEDGEAYVLLLGDRRLEVRRTADNKPTAILVHPSRITALTFLP
SSSSFSSSDSYEEEKEKEKGKKQQHVLTACDDLQLRIVDGASGAIISSID
VTPFCGRIKEAVLLHGSSSSGEGGREVVTASSNGKIVIWSINAAGTVVRP
GPRTSLGECVRITCLAAYAVSEGGAGTEAAAAAAGLAQVNKRKKRKRKHK
EEVKEGGEEVVLGHDRGMLRHEKMLKQHKKDRASKGSSGVSPFKQKEPMG
EVGSSIRDDSSKIRGERARKPQQQQQQHQESSKSQAGL* back to topmRNA from alignment at chr22:337935..340388- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01090.1 ID=NO22G01090.1|Name=NO22G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp|location=Sequence derived from alignment at chr22:337935..340388- (Nannochloropsis oceanica)
GGATGCCTGGGTGAGATGGAGGACGGATGGGATAGATGGAGTAGGATGTG
AGAGGATAGGCAGAAAGGCACAATTTGACCAGAGGTCCTTGAGCTGTAAT
GGCTGGTCCCACTATAAAGGCGTCTGTTGTCGCTCTGTCTGGGTGGTGGG
AGCGTGTGGGCGTGGTCGTGGTGGCACAAAGGAGCGTGGTTCATGATGCA
AGCACGACCTCCTTCTCTTGACGAGCACCACCACAATCAAGCCTTCATCC
ACCCACCACCCGCAGTCCTTGTTAGAGGAGGCAAAAATGTTCTAGTATTA
CACATGAGGTGGAAGAGGGGAGTGAGGGTGGGTCCTCGAGGCCAAAGAAT
TGTGCAACAGGTAGCGAAAGAAGAAGAGGACGCCTGGTGCTGCTTGTGTG
GTGTTGGGTGGAGGGCAGATGGGAGGACGGAAGAAGAATGAAACTTTGCG
ACCTCAACGAGGATATTGGCCAGTGTTCCATAAGCTCTTCGCCCGCTTTG
TGCTCTGTCTAGTGCTTGTGCTTTGTGAGACGCGGGGGAAACGGGCTAGC
CTCCTTACCGGCCACCCATCAGACCCGCCTTGATTGGTTGACACGCCTCT
ACAGCGCTCTCCCCTCCCTCTCTCCTCACAGATCACTAATGCCGGCCCCT
GGACCTCCTAGTGCAGCAACGACCGTCGTTAATGCCGGGCCTCCTTTACA
GCCACCTGCTTTTGCGCCCAAGACAATTTGCGTAGCTGGTACCTATGACG
GAGGCATTGTTGGTTGGGAAGTCCAGCGTAGGACCCAAGACGCAACAGGG
CCAGCAAAACCCGCGGCGCTCAAGATGGTACGTACGTACGCCTTGCCCTT
GCACTTAACATGGTGGGACGCGTAAGAGGAACTTACGGATAAAACTCTTC
GTATCTCACCCAGTCCTTCTATAAAGTTGTCTCTATGAACTCACGAGAAC
ACTTCCTCCCACTCCACCTCGCACACAGACCTTCGCCTACACCCCCCACC
AAGGCAGCGTCCGTTCCCTTGCCGTACCCAGGGGAGGTGCGAAAGCAGGC
CTCCTCCTTGTGTCGGGCGGAATGGACGAACACATCCGCATGTACGACCT
GCGAAAAAGAGCGGAGGCCGGAGAGCTTCTCCACCATAAGGGCACCATCA
CCGCCCTTGGCTTCGTGGGGTCATCCCACTTGCTGAGCGGAAGCGAGGAT
GGCATGGTTTGCATTTGGCGTGTGTACGATTGGAGTTTGTTGCACATTTT
AGGAGGGCATAAAGGAGCTGTCACTGCGGTGGCTTTACATCCCTCGGGAA
AGCTGGCCCTGTCCACCGGGCGAGATCGGAGTTTACGTCTCTGGGATTTA
GTCAAAGGCCGGTGTGCATATATCACCAAGTTGGAGGTAGTGGCGGAGAG
CGTGAAATGGTCGGAGGACGGGGAGGCATATGTCTTGCTGTTGGGGGATC
GTCGGTTGGAAGTTCGGCGGACGGCTGATAACAAGCCTACGGCCATCCTG
GTCCACCCATCGCGGATTACCGCTCTGACATTCCTTCCTTCCTCCTCCTC
TTTCTCATCTTCGGATTCTTACGAGGAGGAGAAGGAGAAGGAAAAAGGAA
AGAAGCAGCAGCATGTGTTAACAGCGTGCGATGACTTGCAGCTTCGGATT
GTGGATGGAGCGAGTGGAGCTATCATCTCCAGTATAGATGTCACCCCCTT
CTGTGGGCGAATCAAGGAAGCCGTGCTCTTGCACGGTAGCAGTAGCAGTG
GGGAGGGAGGAAGGGAGGTAGTGACGGCCTCATCGAATGGGAAGATTGTT
ATTTGGTCGATCAACGCCGCAGGCACTGTCGTACGGCCTGGCCCCAGAAC
TAGTCTCGGAGAGTGCGTGCGTATCACTTGCCTAGCCGCCTACGCAGTCT
CGGAAGGGGGGGCGGGTACAGAAGCAGCTGCGGCGGCTGCGGGACTTGCG
CAGGTGAACAAGCGAAAGAAACGGAAGCGTAAACATAAAGAGGAGGTGAA
GGAGGGGGGCGAAGAAGTGGTGCTGGGGCATGATAGGGGGATGCTCAGGC
ACGAGAAAATGTTGAAACAGCATAAAAAGGACAGGGCGAGCAAAGGCTCG
AGTGGGGTATCGCCATTTAAACAGAAAGAACCTATGGGCGAAGTGGGCAG
CAGCATTAGGGACGACAGCAGCAAGATTAGAGGGGAGAGAGCGAGGAAAC
CGCAACAGCAGCAGCAGCAGCACCAAGAGTCAAGCAAGAGTCAAGCAGGT
TTGTAGATCGTACGCAGGTCAATAGCTATGACATTTTTTTTTAGAAAAAG
CAGCACTATCAACAAGATAACGGGAAAAAAACGAGGAAGCCTTCTGCTGT
TAAGACTAGGAGCGGTGTCGTGAGTTTCTGACATTGAAATCAACTAAAAG
TACCGGGGGAGGGAGTGGAATGAGAAAAGAAAAACAGCTAGTATTTAATG
AATC back to topCoding sequence (CDS) from alignment at chr22:337935..340388- >NO22G01090.1 ID=NO22G01090.1|Name=NO22G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr22:337935..340388- (Nannochloropsis oceanica)
ATGCCGGCCCCTGGACCTCCTAGTGCAGCAACGACCGTCGTTAATGCCGG
GCCTCCTTTACAGCCACCTGCTTTTGCGCCCAAGACAATTTGCGTAGCTG
GTACCTATGACGGAGGCATTGTTGGTTGGGAAGTCCAGCGTAGGACCCAA
GACGCAACAGGGCCAGCAAAACCCGCGGCGCTCAAGATGACCTTCGCCTA
CACCCCCCACCAAGGCAGCGTCCGTTCCCTTGCCGTACCCAGGGGAGGTG
CGAAAGCAGGCCTCCTCCTTGTGTCGGGCGGAATGGACGAACACATCCGC
ATGTACGACCTGCGAAAAAGAGCGGAGGCCGGAGAGCTTCTCCACCATAA
GGGCACCATCACCGCCCTTGGCTTCGTGGGGTCATCCCACTTGCTGAGCG
GAAGCGAGGATGGCATGGTTTGCATTTGGCGTGTGTACGATTGGAGTTTG
TTGCACATTTTAGGAGGGCATAAAGGAGCTGTCACTGCGGTGGCTTTACA
TCCCTCGGGAAAGCTGGCCCTGTCCACCGGGCGAGATCGGAGTTTACGTC
TCTGGGATTTAGTCAAAGGCCGGTGTGCATATATCACCAAGTTGGAGGTA
GTGGCGGAGAGCGTGAAATGGTCGGAGGACGGGGAGGCATATGTCTTGCT
GTTGGGGGATCGTCGGTTGGAAGTTCGGCGGACGGCTGATAACAAGCCTA
CGGCCATCCTGGTCCACCCATCGCGGATTACCGCTCTGACATTCCTTCCT
TCCTCCTCCTCTTTCTCATCTTCGGATTCTTACGAGGAGGAGAAGGAGAA
GGAAAAAGGAAAGAAGCAGCAGCATGTGTTAACAGCGTGCGATGACTTGC
AGCTTCGGATTGTGGATGGAGCGAGTGGAGCTATCATCTCCAGTATAGAT
GTCACCCCCTTCTGTGGGCGAATCAAGGAAGCCGTGCTCTTGCACGGTAG
CAGTAGCAGTGGGGAGGGAGGAAGGGAGGTAGTGACGGCCTCATCGAATG
GGAAGATTGTTATTTGGTCGATCAACGCCGCAGGCACTGTCGTACGGCCT
GGCCCCAGAACTAGTCTCGGAGAGTGCGTGCGTATCACTTGCCTAGCCGC
CTACGCAGTCTCGGAAGGGGGGGCGGGTACAGAAGCAGCTGCGGCGGCTG
CGGGACTTGCGCAGGTGAACAAGCGAAAGAAACGGAAGCGTAAACATAAA
GAGGAGGTGAAGGAGGGGGGCGAAGAAGTGGTGCTGGGGCATGATAGGGG
GATGCTCAGGCACGAGAAAATGTTGAAACAGCATAAAAAGGACAGGGCGA
GCAAAGGCTCGAGTGGGGTATCGCCATTTAAACAGAAAGAACCTATGGGC
GAAGTGGGCAGCAGCATTAGGGACGACAGCAGCAAGATTAGAGGGGAGAG
AGCGAGGAAACCGCAACAGCAGCAGCAGCAGCACCAAGAGTCAAGCAAGA
GTCAAGCAGGTTTGTAG back to top
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