NO22G01000.1, NO22G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01000.1
Unique NameNO22G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr22:313880..315235 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:313880..315235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01000.1 vs.
Match: EWM21446.1 (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 367.5 bits (942), Expect = 5.400e-98
Identity = 201/383 (52.48%), Postives = 240/383 (62.66%), Query Frame = 0 
Query:   13 THVIRLLTRRCERGTSFPNTHALEAWAEKRSILLAHPHYTPLPRYTKSTIATCFSPDGHTFASTHGDHTVKLICFQTNRVLHTLTGHPRTPWTVKYHPCNPHLLASGCIGGQVRIWDTLAGRCLYRASLDLPIISLSFHPSPLPGTHLLAIATFHAIWLWPYETCAKPYNEWQTERLLRCVCFPPPDGRHILIGLGNATRTPPPQLLQQQQQQQQQHNQYLQHHQHTQPQQPQQKTFHLFIWDFDVQKAMTPRNKRPPMAPARQRRRRVQEADEEEDDHDEGGGREGGEGGGGDGQEGGGREGGRGRSRVTSTSAPPPPPPAAGPRVQYYSSPLSRPRPLIENALLYNDGGFDISGCGRILVTCAEFHPRDSVLG-PGRRGWG 395
            T+V++LL  R   G +     ALE+WAE+ S++ A  HY  LPR TKSTIATCFSPDG+  ASTHGDH+VKL+C+ T RVL  L GHPRTPWTVK+HP +P LLASGCIGGQVRIWD  +G CL+RA+LDLPIISLSFHPS   GT +LAIATFH+IWLWPY+TCA+PYNEWQTERLLRCVCFPPP GRHIL+GL N TRT P  ++Q+  +  +   +  +    T    P  KTFHLF WDFD +KAM PR +R PMAP R                        G  G GD + G G         + S+    P P                   L+E A+LYNDGG D+S CGR LVTCA+F   D +LG      WG
Sbjct:   10 TNVLQLLENRRRHGETGATQRALESWAERYSLVHAQAHYISLPRSTKSTIATCFSPDGNMLASTHGDHSVKLVCYHTRRVLRVLVGHPRTPWTVKFHPRSPRLLASGCIGGQVRIWDAESGHCLHRAALDLPIISLSFHPSTA-GTQILAIATFHSIWLWPYQTCARPYNEWQTERLLRCVCFPPPQGRHILVGLSNDTRTAPT-MMQRHSEDNESGGERDRGAGTTPAGSP--KTFHLFCWDFDAEKAMVPRARRTPMAPMR------------------------GRPGRGDEEVGEGSAPPVVMRHLYSSPLGRPRP-------------------LLEKAVLYNDGGMDVSACGRFLVTCAQFQRHDLILGSDSSEAWG 345
The following BLAST results are available for this feature:
BLAST of NO22G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21446.15.400e-9852.48WD40-repeat-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01000NO22G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01000.1NO22G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01000.1.cds1NO22G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01000.1.cds2NO22G01000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01000.1 ID=NO22G01000.1|Name=NO22G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGGGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATACG
GCTACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGCACG
CCCTCGAGGCTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACAC
TATACCCCCCTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTC
ACCCGACGGCCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAAC
TCATATGCTTCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCC
CGCACGCCTTGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGC
CTCAGGCTGTATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCC
GCTGTCTGTACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTT
CATCCCTCCCCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCA
TGCCATCTGGCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGT
GGCAGACAGAACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGC
CGACACATCTTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACA
GCTGCTCCAGCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCC
AGCACCATCAGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCAT
CTGTTCATATGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAA
ACGTCCTCCAATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAG
CAGACGAAGAGGAAGATGATCATGATGAAGGAGGGGGGAGAGAAGGAGGA
GAAGGAGGAGGAGGAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACG
AGGACGCAGCCGAGTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCG
CCGCAGGCCCACGTGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGG
CCACTAATCGAAAATGCCTTGCTGTACAATGACGGTGGCTTTGATATTTC
AGGGTGTGGAAGGATCTTGGTGACTTGTGCCGAGTTCCACCCGCGGGATT
CGGTGTTGGGGCCAGGGAGGAGAGGGTGGGGGGAGGAAGGGATAGCGGTG
GGGATGAAGGAGTGA
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protein sequence of NO22G01000.1

>NO22G01000.1-protein ID=NO22G01000.1-protein|Name=NO22G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MGSQHRKSRRPRTHVIRLLTRRCERGTSFPNTHALEAWAEKRSILLAHPH
YTPLPRYTKSTIATCFSPDGHTFASTHGDHTVKLICFQTNRVLHTLTGHP
RTPWTVKYHPCNPHLLASGCIGGQVRIWDTLAGRCLYRASLDLPIISLSF
HPSPLPGTHLLAIATFHAIWLWPYETCAKPYNEWQTERLLRCVCFPPPDG
RHILIGLGNATRTPPPQLLQQQQQQQQQHNQYLQHHQHTQPQQPQQKTFH
LFIWDFDVQKAMTPRNKRPPMAPARQRRRRVQEADEEEDDHDEGGGREGG
EGGGGDGQEGGGREGGRGRSRVTSTSAPPPPPPAAGPRVQYYSSPLSRPR
PLIENALLYNDGGFDISGCGRILVTCAEFHPRDSVLGPGRRGWGEEGIAV
GMKE*
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mRNA from alignment at chr22:313880..315235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01000.1 ID=NO22G01000.1|Name=NO22G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at chr22:313880..315235- (Nannochloropsis oceanica)
ATGGGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATACG
GCTACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGGTAG
GTTGTAGATAATGGTCGTTCGTCAATCAACCCATGTCACAATTCAATTAT
TATCCCTACCCCATACCGACTCCTCATCCTCCTCTTACCTTACCGCCCCT
CCTATCCTACCCCACCTCCTTCACTCGCGAACAAAAGCACGCCCTCGAGG
CTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACACTATACCCCC
CTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTCACCCGACGG
CCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAACTCATATGCT
TCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCCCGCACGCCT
TGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGCCTCAGGCTG
TATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCCGCTGTCTGT
ACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTTCATCCCTCC
CCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCATGCCATCTG
GCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGTGGCAGACAG
AACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGCCGACACATC
TTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACAGCTGCTCCA
GCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCCAGCACCATC
AGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCATCTGTTCATA
TGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAAACGTCCTCC
AATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAGCAGACGAAG
AGGAAGATGATCATGATGAAGGAGGGGGGAGAGAAGGAGGAGAAGGAGGA
GGAGGAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACGAGGACGCAG
CCGAGTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCGCCGCAGGCC
CACGTGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGGCCACTAATC
GAAAATGCCTTGCTGTACAATGACGGTGGCTTTGATATTTCAGGGTGTGG
AAGGATCTTGGTGACTTGTGCCGAGTTCCACCCGCGGGATTCGGTGTTGG
GGCCAGGGAGGAGAGGGTGGGGGGAGGAAGGGATAGCGGTGGGGATGAAG
GAGTGA
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Coding sequence (CDS) from alignment at chr22:313880..315235-

>NO22G01000.1 ID=NO22G01000.1|Name=NO22G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr22:313880..315235- (Nannochloropsis oceanica)
ATGGGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATACG
GCTACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGCACG
CCCTCGAGGCTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACAC
TATACCCCCCTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTC
ACCCGACGGCCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAAC
TCATATGCTTCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCC
CGCACGCCTTGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGC
CTCAGGCTGTATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCC
GCTGTCTGTACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTT
CATCCCTCCCCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCA
TGCCATCTGGCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGT
GGCAGACAGAACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGC
CGACACATCTTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACA
GCTGCTCCAGCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCC
AGCACCATCAGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCAT
CTGTTCATATGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAA
ACGTCCTCCAATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAG
CAGACGAAGAGGAAGATGATCATGATGAAGGAGGGGGGAGAGAAGGAGGA
GAAGGAGGAGGAGGAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACG
AGGACGCAGCCGAGTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCG
CCGCAGGCCCACGTGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGG
CCACTAATCGAAAATGCCTTGCTGTACAATGACGGTGGCTTTGATATTTC
AGGGTGTGGAAGGATCTTGGTGACTTGTGCCGAGTTCCACCCGCGGGATT
CGGTGTTGGGGCCAGGGAGGAGAGGGTGGGGGGAGGAAGGGATAGCGGTG
GGGATGAAGGAGTGA
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Synonyms
Publications