NO22G00870.1, NO22G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00870.1
Unique NameNO22G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length947
Alignment locationchr22:276677..277623 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:276677..277623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00870.1 vs.
Match: XP_005853542.1 (hypothetical protein NGA_2120020, partial [Nannochloropsis gaditana CCMP526]; XP_005855988.1 hypothetical protein NGA_2120010, partial [Nannochloropsis gaditana CCMP526]; EKU20373.1 hypothetical protein NGA_2120010, partial [Nannochloropsis gaditana CCMP526]; EKU22818.1 hypothetical protein NGA_2120020, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.8 bits (569), Expect = 6.300e-55
Identity = 141/266 (53.01%), Postives = 168/266 (63.16%), Query Frame = 0 
Query:    1 MDLKQCLAILSGRGVCEHGSHEHNQPHTSTASSKTTEPLGQVIDLLSSVPPSSGTSNDKVDKDNA----DQAAAALSTEARAQASVAKLREGLAGLDVQGLIRAFRQAQEERAQAYQRFDEGLNKVLASRAFAEYDGLCAEATAGFAALSNLVNAVEHCLGAAPHERKVLAGLLRRVQTEEKEKLSLTAALHLETFRLATAVAGTTPMGGVSDGEGGAGAGEMTERDGREEMLLREGIKALDVRIGEVKGRINEILEELRYEVEEE 263
            MD  +C AIL+GR  CE GS  H   H S    +    LGQVIDL  S P S      +  ++ +    ++    LS EA+AQ SV KL+EGL  L V+ L++ FRQAQEER QAY  FD+GL ++L+SRAF EYD LCAEATA FA LSNLVNAV  CLG  P+ R VLA LLRR+Q EEKEKLSLTAALHLE FRLAT+                +GA      DGRE MLLREG + L+  I  V  RIN++LEE+RYE EEE
Sbjct:    6 MDFGKCSAILAGRKSCEVGSQRH---HHSEEEVQEGCLLGQVIDLRPSAPSSESVHACEPPQETSTHPSNKEETILSVEAQAQQSVHKLQEGLTALPVRELVKTFRQAQEERVQAYNFFDQGLAQILSSRAFTEYDALCAEATAKFAVLSNLVNAVAECLGRDPYNRVVLARLLRRIQAEEKEKLSLTAALHLEKFRLATSTC--------------SGAAGNENSDGREAMLLREGARRLETNIRHVVCRINDVLEEIRYEEEEE 254
The following BLAST results are available for this feature:
BLAST of NO22G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853542.16.300e-5553.01hypothetical protein NGA_2120020, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00870NO22G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00870.1NO22G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00870.1.cds1NO22G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00870.1 ID=NO22G00870.1|Name=NO22G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=947bp
AACTTGGCAACTGATATTCTATTTATATCTACATATCTCCAGCGATAAGA
GTTTCACACAGACTCTCTCTTGGCCACTCCCCACGAGCACAACCACAGTA
CAACAAGCAACTCTCACACTCTAACATGGATTTGAAGCAGTGTCTGGCCA
TCCTATCAGGGCGGGGCGTCTGCGAGCATGGCAGTCACGAGCACAATCAA
CCCCACACGTCAACAGCATCATCCAAGACGACGGAACCTTTGGGGCAAGT
CATTGACTTGCTGTCGTCCGTTCCTCCAAGTTCAGGTACCAGCAACGACA
AGGTGGACAAGGACAACGCTGATCAAGCAGCAGCAGCGCTGTCCACCGAG
GCTCGGGCGCAGGCGAGCGTGGCAAAATTGCGGGAGGGACTCGCGGGGTT
GGACGTGCAGGGCCTCATAAGAGCCTTTCGACAAGCTCAAGAAGAACGCG
CGCAGGCATACCAGCGATTCGATGAGGGTTTGAACAAGGTGCTGGCTTCC
CGGGCGTTTGCTGAATATGATGGGTTGTGTGCCGAGGCGACGGCGGGGTT
TGCAGCTTTGAGTAACCTGGTCAATGCCGTGGAGCATTGCCTAGGGGCAG
CCCCCCATGAGCGGAAGGTGTTGGCTGGGCTTCTCCGACGGGTGCAGACG
GAGGAAAAAGAGAAATTGTCCTTGACGGCGGCGTTACACTTGGAAACATT
TCGGCTCGCAACGGCGGTGGCGGGGACGACACCGATGGGGGGAGTGTCTG
ATGGTGAGGGAGGGGCAGGTGCCGGGGAGATGACGGAGAGGGATGGGAGG
GAAGAGATGTTGTTAAGGGAGGGCATCAAGGCACTTGATGTGAGGATAGG
GGAGGTAAAGGGTCGGATCAATGAGATCTTGGAAGAGTTGAGGTATGAGG
TAGAGGAGGAGTAGCTGTGAGTAAAGAAGAAAAAGATAAATAGAGGA
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protein sequence of NO22G00870.1

>NO22G00870.1-protein ID=NO22G00870.1-protein|Name=NO22G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MDLKQCLAILSGRGVCEHGSHEHNQPHTSTASSKTTEPLGQVIDLLSSVP
PSSGTSNDKVDKDNADQAAAALSTEARAQASVAKLREGLAGLDVQGLIRA
FRQAQEERAQAYQRFDEGLNKVLASRAFAEYDGLCAEATAGFAALSNLVN
AVEHCLGAAPHERKVLAGLLRRVQTEEKEKLSLTAALHLETFRLATAVAG
TTPMGGVSDGEGGAGAGEMTERDGREEMLLREGIKALDVRIGEVKGRINE
ILEELRYEVEEE*
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mRNA from alignment at chr22:276677..277623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00870.1 ID=NO22G00870.1|Name=NO22G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at chr22:276677..277623+ (Nannochloropsis oceanica)
AACTTGGCAACTGATATTCTATTTATATCTACATATCTCCAGCGATAAGA
GTTTCACACAGACTCTCTCTTGGCCACTCCCCACGAGCACAACCACAGTA
CAACAAGCAACTCTCACACTCTAACATGGATTTGAAGCAGTGTCTGGCCA
TCCTATCAGGGCGGGGCGTCTGCGAGCATGGCAGTCACGAGCACAATCAA
CCCCACACGTCAACAGCATCATCCAAGACGACGGAACCTTTGGGGCAAGT
CATTGACTTGCTGTCGTCCGTTCCTCCAAGTTCAGGTACCAGCAACGACA
AGGTGGACAAGGACAACGCTGATCAAGCAGCAGCAGCGCTGTCCACCGAG
GCTCGGGCGCAGGCGAGCGTGGCAAAATTGCGGGAGGGACTCGCGGGGTT
GGACGTGCAGGGCCTCATAAGAGCCTTTCGACAAGCTCAAGAAGAACGCG
CGCAGGCATACCAGCGATTCGATGAGGGTTTGAACAAGGTGCTGGCTTCC
CGGGCGTTTGCTGAATATGATGGGTTGTGTGCCGAGGCGACGGCGGGGTT
TGCAGCTTTGAGTAACCTGGTCAATGCCGTGGAGCATTGCCTAGGGGCAG
CCCCCCATGAGCGGAAGGTGTTGGCTGGGCTTCTCCGACGGGTGCAGACG
GAGGAAAAAGAGAAATTGTCCTTGACGGCGGCGTTACACTTGGAAACATT
TCGGCTCGCAACGGCGGTGGCGGGGACGACACCGATGGGGGGAGTGTCTG
ATGGTGAGGGAGGGGCAGGTGCCGGGGAGATGACGGAGAGGGATGGGAGG
GAAGAGATGTTGTTAAGGGAGGGCATCAAGGCACTTGATGTGAGGATAGG
GGAGGTAAAGGGTCGGATCAATGAGATCTTGGAAGAGTTGAGGTATGAGG
TAGAGGAGGAGTAGCTGTGAGTAAAGAAGAAAAAGATAAATAGAGGA
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Coding sequence (CDS) from alignment at chr22:276677..277623+

>NO22G00870.1 ID=NO22G00870.1|Name=NO22G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr22:276677..277623+ (Nannochloropsis oceanica)
ATGGATTTGAAGCAGTGTCTGGCCATCCTATCAGGGCGGGGCGTCTGCGA
GCATGGCAGTCACGAGCACAATCAACCCCACACGTCAACAGCATCATCCA
AGACGACGGAACCTTTGGGGCAAGTCATTGACTTGCTGTCGTCCGTTCCT
CCAAGTTCAGGTACCAGCAACGACAAGGTGGACAAGGACAACGCTGATCA
AGCAGCAGCAGCGCTGTCCACCGAGGCTCGGGCGCAGGCGAGCGTGGCAA
AATTGCGGGAGGGACTCGCGGGGTTGGACGTGCAGGGCCTCATAAGAGCC
TTTCGACAAGCTCAAGAAGAACGCGCGCAGGCATACCAGCGATTCGATGA
GGGTTTGAACAAGGTGCTGGCTTCCCGGGCGTTTGCTGAATATGATGGGT
TGTGTGCCGAGGCGACGGCGGGGTTTGCAGCTTTGAGTAACCTGGTCAAT
GCCGTGGAGCATTGCCTAGGGGCAGCCCCCCATGAGCGGAAGGTGTTGGC
TGGGCTTCTCCGACGGGTGCAGACGGAGGAAAAAGAGAAATTGTCCTTGA
CGGCGGCGTTACACTTGGAAACATTTCGGCTCGCAACGGCGGTGGCGGGG
ACGACACCGATGGGGGGAGTGTCTGATGGTGAGGGAGGGGCAGGTGCCGG
GGAGATGACGGAGAGGGATGGGAGGGAAGAGATGTTGTTAAGGGAGGGCA
TCAAGGCACTTGATGTGAGGATAGGGGAGGTAAAGGGTCGGATCAATGAG
ATCTTGGAAGAGTTGAGGTATGAGGTAGAGGAGGAGTAG
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Synonyms
Publications