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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr22 | genome | chr22:267758..271580 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00820.2 vs.
Match: EWM21413.1 (ring finger protein 10, partial [Nannochloropsis gaditana]) HSP 1 Score: 138.7 bits (348), Expect = 4.900e-29 Identity = 86/157 (54.78%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 94 FP-PSLPPCPICLDTPRAAQLTKCGHHFCAPCILRYLEEEHRVRRCPMCFESICQPDLRPVEAAEVCALPPSLPLPSRKPRSAEGGGACVRPSSLSHASSSKEGEREGGKEEGRLELWLLAREKGTLTPRVV-GGREGGKEAGQRRNRSISSTSETD 249
FP P LPPCPIC D PRAAQ+T+CGHH+CAPC+LRYLEEE VRRCPMC E I Q DLRP+EA PSLP S P SA PS S ++ S+E E E R++ LLAR KG+LTPRVV GG GG + R RS S SE +
Sbjct: 48 FPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHIHQSDLRPLEAWS-----PSLPASS-PPLSAS-------PSPPSSSAESEEAREEEAGREERVKFLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEE 191
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00820.2 ID=NO22G00820.2|Name=NO22G00820.2|organism=Nannochloropsis oceanica|type=mRNA|length=3700bp
CCGTTTCACTCGCATAGTTCTGTGTACCTCATATCCGGATATCGACTCTT
TTTCATTATGTTTGCTTCCTTGCTCTTTCTCGTTTCTGCGTTTCGATGAC
ATATCATCGCATACATGTCCGACCTACAATTTGGGCCACCTATTTCTCTG
TCGTCGCCAGCACCAATTCGTGCAACGAGAAACCCATAGAGAGCGCCGAA
ATTAATAAGCGCCTTCCCAAACAAATCTCTTTCCCTCTTGTCTACAAGAA
AGAGTGGTCTTTTGCCTTTTCTATCCCTCATCTGTCCGACAGCAGCAGTC
AGAAAATAACCCCACAAGGCCCAATCTAAATATTTATGCATCTAATTCTA
CTTTTCACTCATCCAGTCCCCCACTTGCCTCTATCCTTGCTTCTCTAATT
TCCTTCAACAACACCTTCTTAAACGTCGTCAAATCACTCGTCAAGGTCGC
CTCAATATACTTCTTCACCAACTTCACATCTCCCAATTTCGCTATCGGCT
TCGGCACTCTGTAGGAAATTGTTAACGCCATGTTTGTCATCCCAGGCTTG
CGCTCCTCAAATGTCACCAATCCCTTATTTGGCAAGCCCGTCATACTCTC
CCAGCTAATACACTCCCCGGGGTTTTCAATCGTATTGCGTGCTTTCCAGG
CGACAGTAAAACCACGCGACTCCAACGTCCATTCCGAGATCCGCCCCACT
TTATCCAGAAACTGCACGGAACGCAACCAGGGAGACCAGCGTGGGTGTTC
TTCTAGTTGGGAGTAAAGGGCGTAGCAATCGGCGGGCGAGGCAGGCACTT
CGATTTCAACCTTCGTGTCGACCCACGACTGAAGACGGGTGGTCCTTGAA
TTTGTGTGGAGGGGGGAGGATGAGGAGATGGAGATGGAAGGAGAAGGTGG
CGCGAGGAAGGCCGACGTGACGAGGAAAAGGTACTGAAGGAGGATGACGA
GGAGAAGGGGAGGAGTGGTGACACGTGATGATGACATGGCCCGAAAAAGG
GGTGGGAGGGGTAGACAAGCAACGGCGGCGGGAGCAGCGGCTATTGAGTG
TGGTGGGATGATACAGGTGGTGAGGGTGGCTTACAATCATGGACTTAGAA
GGCGTAGGGTTCGCTAAGCGTGGTCCAAAGCCACCCCACTCAATGGGCAA
TGCTGCACGGTTGCTTGGCGACTCGCTGCCTTATCGCTCCTGCTCGGCCT
CATCTTGATAAGTTGCTTCCCCGATAAAGTAGCAAGTACACCAAGCGCCG
TTCCTGGATTGTTACGGGTATATGCTGACCGTGTTTTGCTTCGAGAACAG
CGCTGCATGTGGATGACTGCGTGTATGCAGCAAGCGCGCGGCAAAGCAAA
AGCAGTGTGTCGATGACGAGCGCCTCAATATTGGATAGTTTGGCACTAAC
ACTCGCGCACCCGCGTTATGCCAGCGCATTCAGGCACCCAGAAGATCAGA
CTTCACATCCAGCACCACCATCACAACAATATTCACAATTTTAAGCTGTG
AGCGGGGCTGTGCGGTAGGATTCGTGCCTTCGCATTCTAATCAGCCAATC
CCTCAAAATAAACCACATAACAGCGCGTGCCCAGTCCCCCCGGCAAGAAA
GGAGAAGCATCCGTCTCTTTTGTCCAATCCTAAGCCCTTCAAAGCCACTC
CTTCTTCTCCTTGACCGCCGTAATTGTGCGAGTGTGCATCGAGAAGTGAG
GAGCAGCGAGCAACAGCAAGAAGCAGGCGAGCAACGTCAAACCTACCCTT
TTTGCACCCCCCTCGACCATCGAGCATTTATCAAGGTAAGACCCTTACAT
AACCCCTCCTACGAGCGCTACAAGGCCAGAATTCACTATAACATCTCGGT
AATGCCCTGTCTCTTCTTTAGATCTTGGTCTCGCTGATCCTCTGTTGTGT
GTTCGTCACATCCCAATACGTGTGTGAATCTACTCGGGTTCATCGACACG
TCATACGCCTTAAACGCCTGCGCCCCACGCTACCTTCTACAAACGCGCTG
CCCACATTGATCCAGGAGACATACGAGTGCGGAAGAGAAAACGATATTGA
CAGGAGTGACTTATCTGCATTCTCCTTTCCGCTGTCGTCCGTCTGCTTTT
CCCTAGACTTCCAGAAGCAGCTCTATACCTCCCGCAAAAGCGAGAAGCAA
ACGTTGTCCGCACACGCTTGCTTACCGATCGTCGTCGTTGTCGTCGTTAT
CCATACGTCGACTCTCGTCCACGTCTTCTTTTCTCCCTTCCGTGCCCCCG
TTAAATGAGTTTGTTGGACCTCGTCAATTTCCGCTACGAACGATATGACG
AGACACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAGCAGCAGCCAAACGA
CAGCACCACCACCACCATAAGAAGCACACCACCCTGCGTTCTCGCTCCAA
GGAACACTTTCTGCAGACCAACTTCCGCTTTGTCCTCTCCCCCCTCGTCC
CCCCTTCACATCCAGCCCTCTACGACGCCGACTCCCTTATCGACTGGGAC
TACGTCGACCTCGTTTACCTCCCCTCCTCCTCCTTCCCTCCCTCCCTCCC
TCCCTGCCCAATCTGCCTCGACACTCCCCGTGCAGCGCAACTCACCAAGT
GCGGCCACCACTTTTGTGCTCCTTGTATACTGAGATACCTGGAGGAGGAG
CATAGAGTACGGCGTTGTCCGATGTGCTTCGAATCGATCTGTCAACCAGA
CCTGAGGCCTGTGGAAGCCGCTGAAGTATGTGCCCTCCCTCCTTCCCTGC
CTCTGCCTTCAAGAAAGCCTCGATCGGCAGAGGGGGGAGGGGCATGTGTG
CGTCCTTCTTCCCTCTCTCATGCTTCGAGTTCGAAGGAGGGCGAGAGGGA
GGGAGGGAAGGAGGAGGGGAGGTTGGAGTTATGGCTGCTGGCACGAGAGA
AAGGGACTCTGACCCCTCGGGTGGTGGGAGGGAGGGAGGGAGGGAAGGAA
GCAGGACAAAGACGGAATCGAAGCATCAGCAGTACCAGCGAAACCGACGA
CCTCGCAGAAGAAGAAGTGGAAAAAGAAGAGGGAAAATCCCTTTCACCTT
CCTCGCTGCCTCCCTCCTCCTCCTCCTCCTCCTCCTTACACCGCATCCTC
CCGCTCGTGTCTACGCCCCACGCGGTATTCTCCCGCCTTCTCGCCTCCTC
TCCCGACCACGAAACCGCCGCCCTTCTCCGCGAAGAAGACGAATTGAATC
AACTCAGGTCTGAGACCGTCGGACTGGGTGACATGGAATGGATCCCCTTC
ATAGACGACGCACTTGCCCGTCTTGAAAAACGCAGGCGCACCTACATTGA
ACGCAGGACGAACAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAGTGC
ACCTCCCACCTGGCGCGATGCCGGCATCACCCAGGGGCGTGGGAGGGGGA
AAGGGAGGAGGAAGAGAAAGAAGCATCTCGCCGCCACGAAGTACCTCTTC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAATCACAACAAC
AGGAACAGCAGCAATTTCAGCAGCAGCGCCCGCGAGGGCAGAGTGTCAGC
TCGATTTCTTCAGGCGACTCAGTGGGAGACAGTGGAGGAAGAAGCAGCAG
TAGCAGTAGCAGCGGGTTCTCAATCTTTCCCCCGTCCTCCTCCTCCCCCC
CTCCGGGCCCTCCATCTCCTCGCCTAAAAACAGACCCTCGAAAAGTGTAG back to topprotein sequence of NO22G00820.2 >NO22G00820.2-protein ID=NO22G00820.2-protein|Name=NO22G00820.2|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MSLLDLVNFRYERYDETPQAAAAAAAAAAAKRQHHHHHKKHTTLRSRSKE
HFLQTNFRFVLSPLVPPSHPALYDADSLIDWDYVDLVYLPSSSFPPSLPP
CPICLDTPRAAQLTKCGHHFCAPCILRYLEEEHRVRRCPMCFESICQPDL
RPVEAAEVCALPPSLPLPSRKPRSAEGGGACVRPSSLSHASSSKEGEREG
GKEEGRLELWLLAREKGTLTPRVVGGREGGKEAGQRRNRSISSTSETDDL
AEEEVEKEEGKSLSPSSLPPSSSSSSSLHRILPLVSTPHAVFSRLLASSP
DHETAALLREEDELNQLRSETVGLGDMEWIPFIDDALARLEKRRRTYIER
RTNKGGREGGREGGVHLPPGAMPASPRGVGGGKGGGRERSISPPRSTSSQ
QQQQQQQQQQQQSQQQEQQQFQQQRPRGQSVSSISSGDSVGDSGGRSSSS
SSSGFSIFPPSSSSPPPGPPSPRLKTDPRKV* back to topmRNA from alignment at chr22:267758..271580- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00820.2 ID=NO22G00820.2|Name=NO22G00820.2|organism=Nannochloropsis oceanica|type=mRNA|length=3823bp|location=Sequence derived from alignment at chr22:267758..271580- (Nannochloropsis oceanica)
CCGTTTCACTCGCATAGTTCTGTGTACCTCATATCCGGATATCGACTCTT
TTTCATTATGTTTGCTTCCTTGCTCTTTCTCGTTTCTGCGTTTCGATGAC
ATATCATCGCATACATGTCCGACCTACAATTTGGGCCACCTATTTCTCTG
TCGTCGCCAGCACCAATTCGTGCAACGAGAAACCCATAGAGAGCGCCGAA
ATTAATAAGCGCCTTCCCAAACAAATCTCTTTCCCTCTTGTCTACAAGAA
AGAGTGGTCTTTTGCCTTTTCTATCCCTCATCTGTCCGACAGCAGCAGTC
AGAAAATAACCCCACAAGGCCCAATCTAAATATTTATGCATCTAATTCTA
CTTTTCACTCATCCAGTCCCCCACTTGCCTCTATCCTTGCTTCTCTAATT
TCCTTCAACAACACCTTCTTAAACGTCGTCAAATCACTCGTCAAGGTCGC
CTCAATATACTTCTTCACCAACTTCACATCTCCCAATTTCGCTATCGGCT
TCGGCACTCTGTAGGAAATTGTTAACGCCATGTTTGTCATCCCAGGCTTG
CGCTCCTCAAATGTCACCAATCCCTTATTTGGCAAGCCCGTCATACTCTC
CCAGCTAATACACTCCCCGGGGTTTTCAATCGTATTGCGTGCTTTCCAGG
CGACAGTAAAACCACGCGACTCCAACGTCCATTCCGAGATCCGCCCCACT
TTATCCAGAAACTGCACGGAACGCAACCAGGGAGACCAGCGTGGGTGTTC
TTCTAGTTGGGAGTAAAGGGCGTAGCAATCGGCGGGCGAGGCAGGCACTT
CGATTTCAACCTTCGTGTCGACCCACGACTGAAGACGGGTGGTCCTTGAA
TTTGTGTGGAGGGGGGAGGATGAGGAGATGGAGATGGAAGGAGAAGGTGG
CGCGAGGAAGGCCGACGTGACGAGGAAAAGGTACTGAAGGAGGATGACGA
GGAGAAGGGGAGGAGTGGTGACACGTGATGATGACATGGCCCGAAAAAGG
GGTGGGAGGGGTAGACAAGCAACGGCGGCGGGAGCAGCGGCTATTGAGTG
TGGTGGGATGATACAGGTGGTGAGGGTGGCTTACAATCATGGACTTAGAA
GGCGTAGGGTTCGCTAAGCGTGGTCCAAAGCCACCCCACTCAATGGGCAA
TGCTGCACGGTTGCTTGGCGACTCGCTGCCTTATCGCTCCTGCTCGGCCT
CATCTTGATAAGTTGCTTCCCCGATAAAGTAGCAAGTACACCAAGCGCCG
TTCCTGGATTGTTACGGGTATATGCTGACCGTGTTTTGCTTCGAGAACAG
CGCTGCATGTGGATGACTGCGTGTATGCAGCAAGCGCGCGGCAAAGCAAA
AGCAGTGTGTCGATGACGAGCGCCTCAATATTGGATAGTTTGGCACTAAC
ACTCGCGCACCCGCGTTATGCCAGCGCATTCAGGCACCCAGAAGATCAGA
CTTCACATCCAGCACCACCATCACAACAATATTCACAATTTTAAGCTGTG
AGCGGGGCTGTGCGGTAGGATTCGTGCCTTCGCATTCTAATCAGCCAATC
CCTCAAAATAAACCACATAACAGCGCGTGCCCAGTCCCCCCGGCAAGAAA
GGAGAAGCATCCGTCTCTTTTGTCCAATCCTAAGCCCTTCAAAGCCACTC
CTTCTTCTCCTTGACCGCCGTAATTGTGCGAGTGTGCATCGAGAAGTGAG
GAGCAGCGAGCAACAGCAAGAAGCAGGCGAGCAACGTCAAACCTACCCTT
TTTGCACCCCCCTCGACCATCGAGCATTTATCAAGGTAAGACCCTTACAT
AACCCCTCCTACGAGCGCTACAAGGCCAGAATTCACTATAACATCTCGGT
AATGCCCTGTCTCTTCTTTAGATCTTGGTCTCGCTGATCCTCTGTTGTGT
GTTCGTCACATCCCAATACGTGTGTGAATCTACTCGGGTTCATCGACACG
TCATACGCCTTAAACGCCTGCGCCCCACGCTACCTTCTACAAACGCGCTG
CCCACATTGATCCAGGAGACATACGAGTGCGGAAGAGAAAACGATATTGA
CAGGAGTGACTTATCTGCATTCTCCTTTCCGCTGTCGTCCGTCTGCTTTT
CCCTAGACTTCCAGAAGCAGCTCTATACCTCCCGCAAAAGCGAGAAGCAA
ACGTTGTCCGCACACGCTTGCTTACCGATCGTCGTCGTTGTCGTCGTTAT
CCATACGTCGACTCTCGTCCACGTCTTCTTTTCTCCCTTCCGTGCCCCCG
TTAAATGAGTTTGTTGGACCTCGTCAATTTCCGCTACGAACGATATGACG
AGACACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAGCAGCAGCCAAACGA
CAGCACCACCACCACCATAAGAAGCACACCACCCTGCGTTCTCGCTCCAA
GGAACACTTTCTGCAGACCAAGTACGTATCAGGGAGAGAGCAAGAAAGTG
TAGGCGGAAGGGAAGACGAAATAGTGATCGTAGACTCATCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAACCCTCCCCCCAGCTTCCG
CTTTGTCCTCTCCCCCCTCGTCCCCCCTTCACATCCAGCCCTCTACGACG
CCGACTCCCTTATCGACTGGGACTACGTCGACCTCGTTTACCTCCCCTCC
TCCTCCTTCCCTCCCTCCCTCCCTCCCTGCCCAATCTGCCTCGACACTCC
CCGTGCAGCGCAACTCACCAAGTGCGGCCACCACTTTTGTGCTCCTTGTA
TACTGAGATACCTGGAGGAGGAGCATAGAGTACGGCGTTGTCCGATGTGC
TTCGAATCGATCTGTCAACCAGACCTGAGGCCTGTGGAAGCCGCTGAAGT
ATGTGCCCTCCCTCCTTCCCTGCCTCTGCCTTCAAGAAAGCCTCGATCGG
CAGAGGGGGGAGGGGCATGTGTGCGTCCTTCTTCCCTCTCTCATGCTTCG
AGTTCGAAGGAGGGCGAGAGGGAGGGAGGGAAGGAGGAGGGGAGGTTGGA
GTTATGGCTGCTGGCACGAGAGAAAGGGACTCTGACCCCTCGGGTGGTGG
GAGGGAGGGAGGGAGGGAAGGAAGCAGGACAAAGACGGAATCGAAGCATC
AGCAGTACCAGCGAAACCGACGACCTCGCAGAAGAAGAAGTGGAAAAAGA
AGAGGGAAAATCCCTTTCACCTTCCTCGCTGCCTCCCTCCTCCTCCTCCT
CCTCCTCCTTACACCGCATCCTCCCGCTCGTGTCTACGCCCCACGCGGTA
TTCTCCCGCCTTCTCGCCTCCTCTCCCGACCACGAAACCGCCGCCCTTCT
CCGCGAAGAAGACGAATTGAATCAACTCAGGTCTGAGACCGTCGGACTGG
GTGACATGGAATGGATCCCCTTCATAGACGACGCACTTGCCCGTCTTGAA
AAACGCAGGCGCACCTACATTGAACGCAGGACGAACAAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGGGAGTGCACCTCCCACCTGGCGCGATGCCGGCAT
CACCCAGGGGCGTGGGAGGGGGAAAGGGAGGAGGAAGAGAAAGAAGCATC
TCGCCGCCACGAAGTACCTCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACAATCACAACAACAGGAACAGCAGCAATTTCAGCAGCAGC
GCCCGCGAGGGCAGAGTGTCAGCTCGATTTCTTCAGGCGACTCAGTGGGA
GACAGTGGAGGAAGAAGCAGCAGTAGCAGTAGCAGCGGGTTCTCAATCTT
TCCCCCGTCCTCCTCCTCCCCCCCTCCGGGCCCTCCATCTCCTCGCCTAA
AAACAGACCCTCGAAAAGTGTAG back to topCoding sequence (CDS) from alignment at chr22:267758..271580- >NO22G00820.2 ID=NO22G00820.2|Name=NO22G00820.2|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr22:267758..271580- (Nannochloropsis oceanica)
ATGAGTTTGTTGGACCTCGTCAATTTCCGCTACGAACGATATGACGAGAC
ACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAGCAGCAGCCAAACGACAGC
ACCACCACCACCATAAGAAGCACACCACCCTGCGTTCTCGCTCCAAGGAA
CACTTTCTGCAGACCAACTTCCGCTTTGTCCTCTCCCCCCTCGTCCCCCC
TTCACATCCAGCCCTCTACGACGCCGACTCCCTTATCGACTGGGACTACG
TCGACCTCGTTTACCTCCCCTCCTCCTCCTTCCCTCCCTCCCTCCCTCCC
TGCCCAATCTGCCTCGACACTCCCCGTGCAGCGCAACTCACCAAGTGCGG
CCACCACTTTTGTGCTCCTTGTATACTGAGATACCTGGAGGAGGAGCATA
GAGTACGGCGTTGTCCGATGTGCTTCGAATCGATCTGTCAACCAGACCTG
AGGCCTGTGGAAGCCGCTGAAGTATGTGCCCTCCCTCCTTCCCTGCCTCT
GCCTTCAAGAAAGCCTCGATCGGCAGAGGGGGGAGGGGCATGTGTGCGTC
CTTCTTCCCTCTCTCATGCTTCGAGTTCGAAGGAGGGCGAGAGGGAGGGA
GGGAAGGAGGAGGGGAGGTTGGAGTTATGGCTGCTGGCACGAGAGAAAGG
GACTCTGACCCCTCGGGTGGTGGGAGGGAGGGAGGGAGGGAAGGAAGCAG
GACAAAGACGGAATCGAAGCATCAGCAGTACCAGCGAAACCGACGACCTC
GCAGAAGAAGAAGTGGAAAAAGAAGAGGGAAAATCCCTTTCACCTTCCTC
GCTGCCTCCCTCCTCCTCCTCCTCCTCCTCCTTACACCGCATCCTCCCGC
TCGTGTCTACGCCCCACGCGGTATTCTCCCGCCTTCTCGCCTCCTCTCCC
GACCACGAAACCGCCGCCCTTCTCCGCGAAGAAGACGAATTGAATCAACT
CAGGTCTGAGACCGTCGGACTGGGTGACATGGAATGGATCCCCTTCATAG
ACGACGCACTTGCCCGTCTTGAAAAACGCAGGCGCACCTACATTGAACGC
AGGACGAACAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAGTGCACCT
CCCACCTGGCGCGATGCCGGCATCACCCAGGGGCGTGGGAGGGGGAAAGG
GAGGAGGAAGAGAAAGAAGCATCTCGCCGCCACGAAGTACCTCTTCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAATCACAACAACAGGA
ACAGCAGCAATTTCAGCAGCAGCGCCCGCGAGGGCAGAGTGTCAGCTCGA
TTTCTTCAGGCGACTCAGTGGGAGACAGTGGAGGAAGAAGCAGCAGTAGC
AGTAGCAGCGGGTTCTCAATCTTTCCCCCGTCCTCCTCCTCCCCCCCTCC
GGGCCCTCCATCTCCTCGCCTAAAAACAGACCCTCGAAAAGTGTAG back to top
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