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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:267758..271580 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00820.1 vs.
Match: EWM21413.1 (ring finger protein 10, partial [Nannochloropsis gaditana]) HSP 1 Score: 138.7 bits (348), Expect = 4.900e-29 Identity = 86/157 (54.78%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 94 FP-PSLPPCPICLDTPRAAQLTKCGHHFCAPCILRYLEEEHRVRRCPMCFESICQPDLRPVEAAEVCALPPSLPLPSRKPRSAEGGGACVRPSSLSHASSSKEGEREGGKEEGRLELWLLAREKGTLTPRVV-GGREGGKEAGQRRNRSISSTSETD 249
FP P LPPCPIC D PRAAQ+T+CGHH+CAPC+LRYLEEE VRRCPMC E I Q DLRP+EA PSLP S P SA PS S ++ S+E E E R++ LLAR KG+LTPRVV GG GG + R RS S SE +
Sbjct: 48 FPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHIHQSDLRPLEAWS-----PSLPASS-PPLSAS-------PSPPSSSAESEEAREEEAGREERVKFLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEE 191
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00820.1 ID=NO22G00820.1|Name=NO22G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3614bp CCGTTTCACTCGCATAGTTCTGTGTACCTCATATCCGGATATCGACTCTT TTTCATTATGTTTGCTTCCTTGCTCTTTCTCGTTTCTGCGTTTCGATGAC ATATCATCGCATACATGTCCGACCTACAATTTGGGCCACCTATTTCTCTG TCGTCGCCAGCACCAATTCGTGCAACGAGAAACCCATAGAGAGCGCCGAA ATTAATAAGCGCCTTCCCAAACAAATCTCTTTCCCTCTTGTCTACAAGAA AGAGTGGTCTTTTGCCTTTTCTATCCCTCATCTGTCCGACAGCAGCAGTC AGAAAATAACCCCACAAGGCCCAATCTAAATATTTATGCATCTAATTCTA CTTTTCACTCATCCAGTCCCCCACTTGCCTCTATCCTTGCTTCTCTAATT TCCTTCAACAACACCTTCTTAAACGTCGTCAAATCACTCGTCAAGGTCGC CTCAATATACTTCTTCACCAACTTCACATCTCCCAATTTCGCTATCGGCT TCGGCACTCTGTAGGAAATTGTTAACGCCATGTTTGTCATCCCAGGCTTG CGCTCCTCAAATGTCACCAATCCCTTATTTGGCAAGCCCGTCATACTCTC CCAGCTAATACACTCCCCGGGGTTTTCAATCGTATTGCGTGCTTTCCAGG CGACAGTAAAACCACGCGACTCCAACGTCCATTCCGAGATCCGCCCCACT TTATCCAGAAACTGCACGGAACGCAACCAGGGAGACCAGCGTGGGTGTTC TTCTAGTTGGGAGTAAAGGGCGTAGCAATCGGCGGGCGAGGCAGGCACTT CGATTTCAACCTTCGTGTCGACCCACGACTGAAGACGGGTGGTCCTTGAA TTTGTGTGGAGGGGGGAGGATGAGGAGATGGAGATGGAAGGAGAAGGTGG CGCGAGGAAGGCCGACGTGACGAGGAAAAGGTACTGAAGGAGGATGACGA GGAGAAGGGGAGGAGTGGTGACACGTGATGATGACATGGCCCGAAAAAGG GGTGGGAGGGGTAGACAAGCAACGGCGGCGGGAGCAGCGGCTATTGAGTG TGGTGGGATGATACAGGTGGTGAGGGTGGCTTACAATCATGGACTTAGAA GGCGTAGGGTTCGCTAAGCGTGGTCCAAAGCCACCCCACTCAATGGGCAA TGCTGCACGGTTGCTTGGCGACTCGCTGCCTTATCGCTCCTGCTCGGCCT CATCTTGATAAGTTGCTTCCCCGATAAAGTAGCAAGTACACCAAGCGCCG TTCCTGGATTGTTACGGGTATATGCTGACCGTGTTTTGCTTCGAGAACAG CGCTGCATGTGGATGACTGCGTGTATGCAGCAAGCGCGCGGCAAAGCAAA AGCAGTGTGTCGATGACGAGCGCCTCAATATTGGATAGTTTGGCACTAAC ACTCGCGCACCCGCGTTATGCCAGCGCATTCAGGCACCCAGAAGATCAGA CTTCACATCCAGCACCACCATCACAACAATATTCACAATTTTAAGCTGTG AGCGGGGCTGTGCGGTAGGATTCGTGCCTTCGCATTCTAATCAGCCAATC CCTCAAAATAAACCACATAACAGCGCGTGCCCAGTCCCCCCGGCAAGAAA GGAGAAGCATCCGTCTCTTTTGTCCAATCCTAAGCCCTTCAAAGCCACTC CTTCTTCTCCTTGACCGCCGTAATTGTGCGAGTGTGCATCGAGAAGTGAG GAGCAGCGAGCAACAGCAAGAAGCAGGCGAGCAACGTCAAACCTACCCTT TTTGCACCCCCCTCGACCATCGAGCATTTATCAAGATCTTGGTCTCGCTG ATCCTCTGTTGTGTGTTCGTCACATCCCAATACGTGTGTGAATCTACTCG GGTTCATCGACACGTCATACGCCTTAAACGCCTGCGCCCCACGCTACCTT CTACAAACGCGCTGCCCACATTGATCCAGGAGACATACGAGTGCGGAAGA GAAAACGATATTGACAGGAGTGACTTATCTGCATTCTCCTTTCCGCTGTC GTCCGTCTGCTTTTCCCTAGACTTCCAGAAGCAGCTCTATACCTCCCGCA AAAGCGAGAAGCAAACGTTGTCCGCACACGCTTGCTTACCGATCGTCGTC GTTGTCGTCGTTATCCATACGTCGACTCTCGTCCACGTCTTCTTTTCTCC CTTCCGTGCCCCCGTTAAATGAGTTTGTTGGACCTCGTCAATTTCCGCTA CGAACGATATGACGAGACACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAG CAGCAGCCAAACGACAGCACCACCACCACCATAAGAAGCACACCACCCTG CGTTCTCGCTCCAAGGAACACTTTCTGCAGACCAACTTCCGCTTTGTCCT CTCCCCCCTCGTCCCCCCTTCACATCCAGCCCTCTACGACGCCGACTCCC TTATCGACTGGGACTACGTCGACCTCGTTTACCTCCCCTCCTCCTCCTTC CCTCCCTCCCTCCCTCCCTGCCCAATCTGCCTCGACACTCCCCGTGCAGC GCAACTCACCAAGTGCGGCCACCACTTTTGTGCTCCTTGTATACTGAGAT ACCTGGAGGAGGAGCATAGAGTACGGCGTTGTCCGATGTGCTTCGAATCG ATCTGTCAACCAGACCTGAGGCCTGTGGAAGCCGCTGAAGTATGTGCCCT CCCTCCTTCCCTGCCTCTGCCTTCAAGAAAGCCTCGATCGGCAGAGGGGG GAGGGGCATGTGTGCGTCCTTCTTCCCTCTCTCATGCTTCGAGTTCGAAG GAGGGCGAGAGGGAGGGAGGGAAGGAGGAGGGGAGGTTGGAGTTATGGCT GCTGGCACGAGAGAAAGGGACTCTGACCCCTCGGGTGGTGGGAGGGAGGG AGGGAGGGAAGGAAGCAGGACAAAGACGGAATCGAAGCATCAGCAGTACC AGCGAAACCGACGACCTCGCAGAAGAAGAAGTGGAAAAAGAAGAGGGAAA ATCCCTTTCACCTTCCTCGCTGCCTCCCTCCTCCTCCTCCTCCTCCTCCT TACACCGCATCCTCCCGCTCGTGTCTACGCCCCACGCGGTATTCTCCCGC CTTCTCGCCTCCTCTCCCGACCACGAAACCGCCGCCCTTCTCCGCGAAGA AGACGAATTGAATCAACTCAGGTCTGAGACCGTCGGACTGGGTGACATGG AATGGATCCCCTTCATAGACGACGCACTTGCCCGTCTTGAAAAACGCAGG CGCACCTACATTGAACGCAGGACGAACAAGGGAGGGAGGGAGGGAGGGAG GGAGGGGGGAGTGCACCTCCCACCTGGCGCGATGCCGGCATCACCCAGGG GCGTGGGAGGGGGAAAGGGAGGAGGAAGAGAAAGAAGCATCTCGCCGCCA CGAAGTACCTCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACA ACAATCACAACAACAGGAACAGCAGCAATTTCAGCAGCAGCGCCCGCGAG GGCAGAGTGTCAGCTCGATTTCTTCAGGCGACTCAGTGGGAGACAGTGGA GGAAGAAGCAGCAGTAGCAGTAGCAGCGGGTTCTCAATCTTTCCCCCGTC CTCCTCCTCCCCCCCTCCGGGCCCTCCATCTCCTCGCCTAAAAACAGACC CTCGAAAAGTGTAG back to topprotein sequence of NO22G00820.1 >NO22G00820.1-protein ID=NO22G00820.1-protein|Name=NO22G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp MSLLDLVNFRYERYDETPQAAAAAAAAAAAKRQHHHHHKKHTTLRSRSKE HFLQTNFRFVLSPLVPPSHPALYDADSLIDWDYVDLVYLPSSSFPPSLPP CPICLDTPRAAQLTKCGHHFCAPCILRYLEEEHRVRRCPMCFESICQPDL RPVEAAEVCALPPSLPLPSRKPRSAEGGGACVRPSSLSHASSSKEGEREG GKEEGRLELWLLAREKGTLTPRVVGGREGGKEAGQRRNRSISSTSETDDL AEEEVEKEEGKSLSPSSLPPSSSSSSSLHRILPLVSTPHAVFSRLLASSP DHETAALLREEDELNQLRSETVGLGDMEWIPFIDDALARLEKRRRTYIER RTNKGGREGGREGGVHLPPGAMPASPRGVGGGKGGGRERSISPPRSTSSQ QQQQQQQQQQQQSQQQEQQQFQQQRPRGQSVSSISSGDSVGDSGGRSSSS SSSGFSIFPPSSSSPPPGPPSPRLKTDPRKV* back to topmRNA from alignment at chr22:267758..271580- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00820.1 ID=NO22G00820.1|Name=NO22G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3823bp|location=Sequence derived from alignment at chr22:267758..271580- (Nannochloropsis oceanica) CCGTTTCACTCGCATAGTTCTGTGTACCTCATATCCGGATATCGACTCTT
TTTCATTATGTTTGCTTCCTTGCTCTTTCTCGTTTCTGCGTTTCGATGAC
ATATCATCGCATACATGTCCGACCTACAATTTGGGCCACCTATTTCTCTG
TCGTCGCCAGCACCAATTCGTGCAACGAGAAACCCATAGAGAGCGCCGAA
ATTAATAAGCGCCTTCCCAAACAAATCTCTTTCCCTCTTGTCTACAAGAA
AGAGTGGTCTTTTGCCTTTTCTATCCCTCATCTGTCCGACAGCAGCAGTC
AGAAAATAACCCCACAAGGCCCAATCTAAATATTTATGCATCTAATTCTA
CTTTTCACTCATCCAGTCCCCCACTTGCCTCTATCCTTGCTTCTCTAATT
TCCTTCAACAACACCTTCTTAAACGTCGTCAAATCACTCGTCAAGGTCGC
CTCAATATACTTCTTCACCAACTTCACATCTCCCAATTTCGCTATCGGCT
TCGGCACTCTGTAGGAAATTGTTAACGCCATGTTTGTCATCCCAGGCTTG
CGCTCCTCAAATGTCACCAATCCCTTATTTGGCAAGCCCGTCATACTCTC
CCAGCTAATACACTCCCCGGGGTTTTCAATCGTATTGCGTGCTTTCCAGG
CGACAGTAAAACCACGCGACTCCAACGTCCATTCCGAGATCCGCCCCACT
TTATCCAGAAACTGCACGGAACGCAACCAGGGAGACCAGCGTGGGTGTTC
TTCTAGTTGGGAGTAAAGGGCGTAGCAATCGGCGGGCGAGGCAGGCACTT
CGATTTCAACCTTCGTGTCGACCCACGACTGAAGACGGGTGGTCCTTGAA
TTTGTGTGGAGGGGGGAGGATGAGGAGATGGAGATGGAAGGAGAAGGTGG
CGCGAGGAAGGCCGACGTGACGAGGAAAAGGTACTGAAGGAGGATGACGA
GGAGAAGGGGAGGAGTGGTGACACGTGATGATGACATGGCCCGAAAAAGG
GGTGGGAGGGGTAGACAAGCAACGGCGGCGGGAGCAGCGGCTATTGAGTG
TGGTGGGATGATACAGGTGGTGAGGGTGGCTTACAATCATGGACTTAGAA
GGCGTAGGGTTCGCTAAGCGTGGTCCAAAGCCACCCCACTCAATGGGCAA
TGCTGCACGGTTGCTTGGCGACTCGCTGCCTTATCGCTCCTGCTCGGCCT
CATCTTGATAAGTTGCTTCCCCGATAAAGTAGCAAGTACACCAAGCGCCG
TTCCTGGATTGTTACGGGTATATGCTGACCGTGTTTTGCTTCGAGAACAG
CGCTGCATGTGGATGACTGCGTGTATGCAGCAAGCGCGCGGCAAAGCAAA
AGCAGTGTGTCGATGACGAGCGCCTCAATATTGGATAGTTTGGCACTAAC
ACTCGCGCACCCGCGTTATGCCAGCGCATTCAGGCACCCAGAAGATCAGA
CTTCACATCCAGCACCACCATCACAACAATATTCACAATTTTAAGCTGTG
AGCGGGGCTGTGCGGTAGGATTCGTGCCTTCGCATTCTAATCAGCCAATC
CCTCAAAATAAACCACATAACAGCGCGTGCCCAGTCCCCCCGGCAAGAAA
GGAGAAGCATCCGTCTCTTTTGTCCAATCCTAAGCCCTTCAAAGCCACTC
CTTCTTCTCCTTGACCGCCGTAATTGTGCGAGTGTGCATCGAGAAGTGAG
GAGCAGCGAGCAACAGCAAGAAGCAGGCGAGCAACGTCAAACCTACCCTT
TTTGCACCCCCCTCGACCATCGAGCATTTATCAAGGTAAGACCCTTACAT
AACCCCTCCTACGAGCGCTACAAGGCCAGAATTCACTATAACATCTCGGT
AATGCCCTGTCTCTTCTTTAGATCTTGGTCTCGCTGATCCTCTGTTGTGT
GTTCGTCACATCCCAATACGTGTGTGAATCTACTCGGGTTCATCGACACG
TCATACGCCTTAAACGCCTGCGCCCCACGCTACCTTCTACAAACGCGCTG
CCCACATTGATCCAGGAGACATACGAGTGCGGAAGAGAAAACGATATTGA
CAGGAGTGACTTATCTGCATTCTCCTTTCCGCTGTCGTCCGTCTGCTTTT
CCCTAGACTTCCAGAAGCAGCTCTATACCTCCCGCAAAAGCGAGAAGCAA
ACGTTGTCCGCACACGCTTGCTTACCGATCGTCGTCGTTGTCGTCGTTAT
CCATACGTCGACTCTCGTCCACGTCTTCTTTTCTCCCTTCCGTGCCCCCG
TTAAATGAGTTTGTTGGACCTCGTCAATTTCCGCTACGAACGATATGACG
AGACACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAGCAGCAGCCAAACGA
CAGCACCACCACCACCATAAGAAGCACACCACCCTGCGTTCTCGCTCCAA
GGAACACTTTCTGCAGACCAAGTACGTATCAGGGAGAGAGCAAGAAAGTG
TAGGCGGAAGGGAAGACGAAATAGTGATCGTAGACTCATCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAACCCTCCCCCCAGCTTCCG
CTTTGTCCTCTCCCCCCTCGTCCCCCCTTCACATCCAGCCCTCTACGACG
CCGACTCCCTTATCGACTGGGACTACGTCGACCTCGTTTACCTCCCCTCC
TCCTCCTTCCCTCCCTCCCTCCCTCCCTGCCCAATCTGCCTCGACACTCC
CCGTGCAGCGCAACTCACCAAGTGCGGCCACCACTTTTGTGCTCCTTGTA
TACTGAGATACCTGGAGGAGGAGCATAGAGTACGGCGTTGTCCGATGTGC
TTCGAATCGATCTGTCAACCAGACCTGAGGCCTGTGGAAGCCGCTGAAGT
ATGTGCCCTCCCTCCTTCCCTGCCTCTGCCTTCAAGAAAGCCTCGATCGG
CAGAGGGGGGAGGGGCATGTGTGCGTCCTTCTTCCCTCTCTCATGCTTCG
AGTTCGAAGGAGGGCGAGAGGGAGGGAGGGAAGGAGGAGGGGAGGTTGGA
GTTATGGCTGCTGGCACGAGAGAAAGGGACTCTGACCCCTCGGGTGGTGG
GAGGGAGGGAGGGAGGGAAGGAAGCAGGACAAAGACGGAATCGAAGCATC
AGCAGTACCAGCGAAACCGACGACCTCGCAGAAGAAGAAGTGGAAAAAGA
AGAGGGAAAATCCCTTTCACCTTCCTCGCTGCCTCCCTCCTCCTCCTCCT
CCTCCTCCTTACACCGCATCCTCCCGCTCGTGTCTACGCCCCACGCGGTA
TTCTCCCGCCTTCTCGCCTCCTCTCCCGACCACGAAACCGCCGCCCTTCT
CCGCGAAGAAGACGAATTGAATCAACTCAGGTCTGAGACCGTCGGACTGG
GTGACATGGAATGGATCCCCTTCATAGACGACGCACTTGCCCGTCTTGAA
AAACGCAGGCGCACCTACATTGAACGCAGGACGAACAAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGGGAGTGCACCTCCCACCTGGCGCGATGCCGGCAT
CACCCAGGGGCGTGGGAGGGGGAAAGGGAGGAGGAAGAGAAAGAAGCATC
TCGCCGCCACGAAGTACCTCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACAATCACAACAACAGGAACAGCAGCAATTTCAGCAGCAGC
GCCCGCGAGGGCAGAGTGTCAGCTCGATTTCTTCAGGCGACTCAGTGGGA
GACAGTGGAGGAAGAAGCAGCAGTAGCAGTAGCAGCGGGTTCTCAATCTT
TCCCCCGTCCTCCTCCTCCCCCCCTCCGGGCCCTCCATCTCCTCGCCTAA
AAACAGACCCTCGAAAAGTGTAG back to topCoding sequence (CDS) from alignment at chr22:267758..271580- >NO22G00820.1 ID=NO22G00820.1|Name=NO22G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr22:267758..271580- (Nannochloropsis oceanica) ATGAGTTTGTTGGACCTCGTCAATTTCCGCTACGAACGATATGACGAGAC ACCTCAAGCAGCAGCAGCAGCTGCAGCCGCAGCAGCAGCCAAACGACAGC ACCACCACCACCATAAGAAGCACACCACCCTGCGTTCTCGCTCCAAGGAA CACTTTCTGCAGACCAACTTCCGCTTTGTCCTCTCCCCCCTCGTCCCCCC TTCACATCCAGCCCTCTACGACGCCGACTCCCTTATCGACTGGGACTACG TCGACCTCGTTTACCTCCCCTCCTCCTCCTTCCCTCCCTCCCTCCCTCCC TGCCCAATCTGCCTCGACACTCCCCGTGCAGCGCAACTCACCAAGTGCGG CCACCACTTTTGTGCTCCTTGTATACTGAGATACCTGGAGGAGGAGCATA GAGTACGGCGTTGTCCGATGTGCTTCGAATCGATCTGTCAACCAGACCTG AGGCCTGTGGAAGCCGCTGAAGTATGTGCCCTCCCTCCTTCCCTGCCTCT GCCTTCAAGAAAGCCTCGATCGGCAGAGGGGGGAGGGGCATGTGTGCGTC CTTCTTCCCTCTCTCATGCTTCGAGTTCGAAGGAGGGCGAGAGGGAGGGA GGGAAGGAGGAGGGGAGGTTGGAGTTATGGCTGCTGGCACGAGAGAAAGG GACTCTGACCCCTCGGGTGGTGGGAGGGAGGGAGGGAGGGAAGGAAGCAG GACAAAGACGGAATCGAAGCATCAGCAGTACCAGCGAAACCGACGACCTC GCAGAAGAAGAAGTGGAAAAAGAAGAGGGAAAATCCCTTTCACCTTCCTC GCTGCCTCCCTCCTCCTCCTCCTCCTCCTCCTTACACCGCATCCTCCCGC TCGTGTCTACGCCCCACGCGGTATTCTCCCGCCTTCTCGCCTCCTCTCCC GACCACGAAACCGCCGCCCTTCTCCGCGAAGAAGACGAATTGAATCAACT CAGGTCTGAGACCGTCGGACTGGGTGACATGGAATGGATCCCCTTCATAG ACGACGCACTTGCCCGTCTTGAAAAACGCAGGCGCACCTACATTGAACGC AGGACGAACAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAGTGCACCT CCCACCTGGCGCGATGCCGGCATCACCCAGGGGCGTGGGAGGGGGAAAGG GAGGAGGAAGAGAAAGAAGCATCTCGCCGCCACGAAGTACCTCTTCGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAATCACAACAACAGGA ACAGCAGCAATTTCAGCAGCAGCGCCCGCGAGGGCAGAGTGTCAGCTCGA TTTCTTCAGGCGACTCAGTGGGAGACAGTGGAGGAAGAAGCAGCAGTAGC AGTAGCAGCGGGTTCTCAATCTTTCCCCCGTCCTCCTCCTCCCCCCCTCC GGGCCCTCCATCTCCTCGCCTAAAAACAGACCCTCGAAAAGTGTAG back to top
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