NO22G00690.1, NO22G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00690.1
Unique NameNO22G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1944
Alignment locationchr22:233270..235359 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:233270..235359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00690.1 vs.
Match: CCA22856.1 (unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 188.0 bits (476), Expect = 6.600e-44
Identity = 126/329 (38.30%), Postives = 178/329 (54.10%), Query Frame = 0 
Query:   14 VDAQRAMLDEMMGMNRNLDNPDAEIADYRDERVCKQFLLGCCPHEVFSKTKIDLGQCERLHDEGLQQKFEADLKKEEEEWEGGREGGPVAEDRKRYERDLEMVLREYIYEADRKIARGRRRTDVPIGEQQQQQQHEQREPLSSQHQQLGGGGVGVGTLGVGGREGGRSDLSSNPEILRLQGEIEEVLAKAEAAGEEGEVDEAQELSEKAEELKRQKNKIQERLLAEGIEKGGMGGREGGHPGAKGPGGIPSLPPTSTAATTAPANAAAPSSSSSSSDPNQRLRVCDVCGAFLSISDNDKRLADHFGGKLHLGYVLLREKMKEIQDRRRE 343
            +DAQRA+LDE+MG NR+ D P+ EI DYRD RVCK FL G CPHE+F  TK+DLG+C +LH   L+ K+E D KK                               Y YE +R++ R     D  I   Q++ + ++                       G +     D+ +  E+L +  EI+EV+ KAE AG EG+VD + EL EK E+LK++K   Q   + + ++  G+G R    P     GG+    P          +   P +  +S+D NQ+LRVCDVCGAFLSI D+D+RLA+HFGGKLHLGY+ +R+K++EI + R+E
Sbjct:    1 MDAQRALLDELMGRNRDGDKPNDEIKDYRDRRVCKYFLCGLCPHELFQNTKMDLGECPKLHIPNLRTKYEKDPKKSSG----------------------------YEYELERELLRFISDLDKKIYRAQKRLEEQE-----------------------GSKAPSLMDVENCKEVLEITAEIQEVMLKAEEAGNEGQVDLSMELMEKVEDLKQKKADAQANAMLQSVQ--GVGAR----PPDYRKGGLEMKAP--------GLSELLPRNPLASTDVNQKLRVCDVCGAFLSIFDSDRRLANHFGGKLHLGYLQIRKKVEEIAELRQE 264
The following BLAST results are available for this feature:
BLAST of NO22G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCA22856.16.600e-4438.30unknown protein putative [Albugo laibachii Nc14][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00690NO22G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00690.1NO22G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00690.1.cds1NO22G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00690.1.cds2NO22G00690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00690.1 ID=NO22G00690.1|Name=NO22G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp
ACAGGCATTCTAGCTTTCCATAAGAGGAAGGGCCAGACGAGTCGAGGCAC
ATTTGTCTTCTAGCCAGGGAGGAGCTCGATCTCAAAGACCAGAGGAGGCC
AAGGAGCCATTCTCGTCAAGTCGGCCCCAATTGCAACAGCATCAGCATCG
CTCACCACCACTCCCACTGCGATTCCAGCCAGCAGCAGCAGTACGACGAT
ACACGATGGGTAAATGGGGAGGCCGCGCGGGACCTCTGTCGGGTGTGGAC
GCCCAACGGGCCATGCTTGACGAGATGATGGGCATGAATCGTAACCTGGA
CAACCCGGACGCGGAGATTGCGGACTATCGCGACGAGCGCGTCTGCAAGC
AGTTTCTCCTCGGTTGCTGCCCGCACGAAGTCTTCAGCAAGACCAAAATC
GATCTCGGGCAATGCGAGCGCCTCCATGACGAAGGCCTGCAACAGAAATT
TGAAGCCGACCTGAAGAAGGAAGAGGAGGAATGGGAGGGAGGGAGGGAGG
GAGGGCCCGTGGCAGAGGACAGGAAGAGGTATGAGAGAGACTTGGAAATG
GTGTTACGAGAGTATATTTATGAGGCGGATAGGAAGATAGCGAGGGGCCG
GAGGAGGACAGACGTTCCGATTGGTGAGCAGCAGCAGCAACAGCAGCATG
AACAGCGCGAGCCGCTATCGTCGCAGCATCAACAGCTGGGAGGAGGAGGA
GTTGGGGTGGGTACGCTTGGAGTAGGAGGAAGGGAGGGGGGAAGAAGTGA
CTTGTCGTCGAATCCGGAGATACTGAGATTACAGGGAGAGATCGAGGAGG
TGCTGGCCAAGGCAGAGGCAGCGGGGGAGGAAGGGGAGGTGGATGAAGCG
CAGGAGTTGAGCGAAAAAGCAGAAGAACTCAAGAGGCAGAAAAATAAAAT
TCAAGAAAGGTTGCTTGCGGAGGGTATTGAGAAAGGAGGGATGGGAGGGA
GAGAGGGAGGGCATCCAGGAGCGAAGGGCCCTGGTGGTATTCCATCCCTC
CCTCCTACCTCCACAGCTGCGACCACCGCTCCTGCTAATGCTGCCGCTCC
TTCTTCGTCATCGTCGTCGTCGGACCCGAACCAAAGGTTGCGGGTGTGTG
ATGTATGTGGAGCGTTTCTATCCATCAGTGACAACGACAAGCGACTGGCC
GACCATTTCGGAGGGAAGTTGCACTTGGGCTATGTCCTGTTGAGGGAGAA
GATGAAGGAGATCCAGGACAGAAGGAGGGAAGGGGGGAAAAGGAGGGGAA
GGGATGGGGGGGGTTCGGATGGTCCTGAAGGGGGCAGTTGGGGGGGAAGA
GGAGGAGGAGGAGGGGGGAGGGAGCGAGGTGGGAGGGGGAGGAGTGGAAG
TAGGGAGAGGGAGCGAAGAGGGGGACGGAGCAGGAGCAGGAGTCGGGAGA
GGGGGAGGGAGGGAGGGAGGGGAGGGAGGGATTATCGTGAAGATAGAGAG
AGGGAGCGTGGTGGAGGGGACAGGTATAGGGAAAGGGGGAGAGATCGAGA
TAACGGACGGGGAGGGAGGGATAGGAGTCGAAGCCGAAGTAGGGAGCGAG
GAGGGAGGAGGTATTGAGGGAAGAGGGTGAAGAGGAGCTGAGGGGTGAAA
GGCACGGGAAAGCAGGGCTGGGTGGCATCAGTTGAGACCCAAAGTAACAC
GCACCGCAATGCGGACAACAACATTGAGGCGGGCGATACTACTACTTGAA
AAGAGAACGAAACAAATATGTCTGAAAGGCTCTATCTTTCTCGTCTATGT
GCATGCGTTTAATTGGTGATAGAGTTGAGAGATTTTCCACACCAGCAGTC
GTGGCGTTCCCCGCTATCACCATGAGTCGACTTATGATGCGGAAATGATT
TTGGAAATACGCATTGAATGCTTTTTCCCTCGAAATGGAACGAAAACTCT
CCAACAATAGAAGTGCTTGCATTTTACTCGAAATGCGCTACCAT
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protein sequence of NO22G00690.1

>NO22G00690.1-protein ID=NO22G00690.1-protein|Name=NO22G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MGKWGGRAGPLSGVDAQRAMLDEMMGMNRNLDNPDAEIADYRDERVCKQF
LLGCCPHEVFSKTKIDLGQCERLHDEGLQQKFEADLKKEEEEWEGGREGG
PVAEDRKRYERDLEMVLREYIYEADRKIARGRRRTDVPIGEQQQQQQHEQ
REPLSSQHQQLGGGGVGVGTLGVGGREGGRSDLSSNPEILRLQGEIEEVL
AKAEAAGEEGEVDEAQELSEKAEELKRQKNKIQERLLAEGIEKGGMGGRE
GGHPGAKGPGGIPSLPPTSTAATTAPANAAAPSSSSSSSDPNQRLRVCDV
CGAFLSISDNDKRLADHFGGKLHLGYVLLREKMKEIQDRRREGGKRRGRD
GGGSDGPEGGSWGGRGGGGGGRERGGRGRSGSRERERRGGRSRSRSRERG
REGGRGGRDYREDRERERGGGDRYRERGRDRDNGRGGRDRSRSRSRERGG
RRY*
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mRNA from alignment at chr22:233270..235359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00690.1 ID=NO22G00690.1|Name=NO22G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at chr22:233270..235359+ (Nannochloropsis oceanica)
ACAGGCATTCTAGCTTTCCATAAGAGGAAGGGCCAGACGAGTCGAGGCAC
ATTTGTCTTCTAGCCAGGGAGGAGCTCGATCTCAAAGACCAGAGGAGGCC
AAGGAGCCATTCTCGTCAAGTCGGCCCCAATTGCAACAGCATCAGCATCG
CTCACCACCACTCCCACTGCGATTCCAGCCAGCAGCAGCAGTACGACGAT
ACACGATGGGTAAATGGGGAGGCCGCGCGGGACCTCTGTCGGGTGTGGAC
GCCCAACGGGCCATGCTTGACGAGATGATGGGCATGAATCGTAACCTGGA
CAACCCGGACGCGGAGATTGCGGACTATCGCGACGAGGTACGTCTTCTGG
TAGCATGTGCCCATCCCTTTTAAATCTATTTCTACACCTTGGCTCTGGGT
AGACAAGCCTTTTGGGATAGCGCTACGTGCCTGCCGGTCTTGCTTCCCCT
CTCCACTTCACACCAACCCCTTTCCCCATACAGCGCGTCTGCAAGCAGTT
TCTCCTCGGTTGCTGCCCGCACGAAGTCTTCAGCAAGACCAAAATCGATC
TCGGGCAATGCGAGCGCCTCCATGACGAAGGCCTGCAACAGAAATTTGAA
GCCGACCTGAAGAAGGAAGAGGAGGAATGGGAGGGAGGGAGGGAGGGAGG
GCCCGTGGCAGAGGACAGGAAGAGGTATGAGAGAGACTTGGAAATGGTGT
TACGAGAGTATATTTATGAGGCGGATAGGAAGATAGCGAGGGGCCGGAGG
AGGACAGACGTTCCGATTGGTGAGCAGCAGCAGCAACAGCAGCATGAACA
GCGCGAGCCGCTATCGTCGCAGCATCAACAGCTGGGAGGAGGAGGAGTTG
GGGTGGGTACGCTTGGAGTAGGAGGAAGGGAGGGGGGAAGAAGTGACTTG
TCGTCGAATCCGGAGATACTGAGATTACAGGGAGAGATCGAGGAGGTGCT
GGCCAAGGCAGAGGCAGCGGGGGAGGAAGGGGAGGTGGATGAAGCGCAGG
AGTTGAGCGAAAAAGCAGAAGAACTCAAGAGGCAGAAAAATAAAATTCAA
GAAAGGTTGCTTGCGGAGGGTATTGAGAAAGGAGGGATGGGAGGGAGAGA
GGGAGGGCATCCAGGAGCGAAGGGCCCTGGTGGTATTCCATCCCTCCCTC
CTACCTCCACAGCTGCGACCACCGCTCCTGCTAATGCTGCCGCTCCTTCT
TCGTCATCGTCGTCGTCGGACCCGAACCAAAGGTTGCGGGTGTGTGATGT
ATGTGGAGCGTTTCTATCCATCAGTGACAACGACAAGCGACTGGCCGACC
ATTTCGGAGGGAAGTTGCACTTGGGCTATGTCCTGTTGAGGGAGAAGATG
AAGGAGATCCAGGACAGAAGGAGGGAAGGGGGGAAAAGGAGGGGAAGGGA
TGGGGGGGGTTCGGATGGTCCTGAAGGGGGCAGTTGGGGGGGAAGAGGAG
GAGGAGGAGGGGGGAGGGAGCGAGGTGGGAGGGGGAGGAGTGGAAGTAGG
GAGAGGGAGCGAAGAGGGGGACGGAGCAGGAGCAGGAGTCGGGAGAGGGG
GAGGGAGGGAGGGAGGGGAGGGAGGGATTATCGTGAAGATAGAGAGAGGG
AGCGTGGTGGAGGGGACAGGTATAGGGAAAGGGGGAGAGATCGAGATAAC
GGACGGGGAGGGAGGGATAGGAGTCGAAGCCGAAGTAGGGAGCGAGGAGG
GAGGAGGTATTGAGGGAAGAGGGTGAAGAGGAGCTGAGGGGTGAAAGGCA
CGGGAAAGCAGGGCTGGGTGGCATCAGTTGAGACCCAAAGTAACACGCAC
CGCAATGCGGACAACAACATTGAGGCGGGCGATACTACTACTTGAAAAGA
GAACGAAACAAATATGTCTGAAAGGCTCTATCTTTCTCGTCTATGTGCAT
GCGTTTAATTGGTGATAGAGTTGAGAGATTTTCCACACCAGCAGTCGTGG
CGTTCCCCGCTATCACCATGAGTCGACTTATGATGCGGAAATGATTTTGG
AAATACGCATTGAATGCTTTTTCCCTCGAAATGGAACGAAAACTCTCCAA
CAATAGAAGTGCTTGCATTTTACTCGAAATGCGCTACCAT
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Coding sequence (CDS) from alignment at chr22:233270..235359+

>NO22G00690.1 ID=NO22G00690.1|Name=NO22G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr22:233270..235359+ (Nannochloropsis oceanica)
ATGGGTAAATGGGGAGGCCGCGCGGGACCTCTGTCGGGTGTGGACGCCCA
ACGGGCCATGCTTGACGAGATGATGGGCATGAATCGTAACCTGGACAACC
CGGACGCGGAGATTGCGGACTATCGCGACGAGCGCGTCTGCAAGCAGTTT
CTCCTCGGTTGCTGCCCGCACGAAGTCTTCAGCAAGACCAAAATCGATCT
CGGGCAATGCGAGCGCCTCCATGACGAAGGCCTGCAACAGAAATTTGAAG
CCGACCTGAAGAAGGAAGAGGAGGAATGGGAGGGAGGGAGGGAGGGAGGG
CCCGTGGCAGAGGACAGGAAGAGGTATGAGAGAGACTTGGAAATGGTGTT
ACGAGAGTATATTTATGAGGCGGATAGGAAGATAGCGAGGGGCCGGAGGA
GGACAGACGTTCCGATTGGTGAGCAGCAGCAGCAACAGCAGCATGAACAG
CGCGAGCCGCTATCGTCGCAGCATCAACAGCTGGGAGGAGGAGGAGTTGG
GGTGGGTACGCTTGGAGTAGGAGGAAGGGAGGGGGGAAGAAGTGACTTGT
CGTCGAATCCGGAGATACTGAGATTACAGGGAGAGATCGAGGAGGTGCTG
GCCAAGGCAGAGGCAGCGGGGGAGGAAGGGGAGGTGGATGAAGCGCAGGA
GTTGAGCGAAAAAGCAGAAGAACTCAAGAGGCAGAAAAATAAAATTCAAG
AAAGGTTGCTTGCGGAGGGTATTGAGAAAGGAGGGATGGGAGGGAGAGAG
GGAGGGCATCCAGGAGCGAAGGGCCCTGGTGGTATTCCATCCCTCCCTCC
TACCTCCACAGCTGCGACCACCGCTCCTGCTAATGCTGCCGCTCCTTCTT
CGTCATCGTCGTCGTCGGACCCGAACCAAAGGTTGCGGGTGTGTGATGTA
TGTGGAGCGTTTCTATCCATCAGTGACAACGACAAGCGACTGGCCGACCA
TTTCGGAGGGAAGTTGCACTTGGGCTATGTCCTGTTGAGGGAGAAGATGA
AGGAGATCCAGGACAGAAGGAGGGAAGGGGGGAAAAGGAGGGGAAGGGAT
GGGGGGGGTTCGGATGGTCCTGAAGGGGGCAGTTGGGGGGGAAGAGGAGG
AGGAGGAGGGGGGAGGGAGCGAGGTGGGAGGGGGAGGAGTGGAAGTAGGG
AGAGGGAGCGAAGAGGGGGACGGAGCAGGAGCAGGAGTCGGGAGAGGGGG
AGGGAGGGAGGGAGGGGAGGGAGGGATTATCGTGAAGATAGAGAGAGGGA
GCGTGGTGGAGGGGACAGGTATAGGGAAAGGGGGAGAGATCGAGATAACG
GACGGGGAGGGAGGGATAGGAGTCGAAGCCGAAGTAGGGAGCGAGGAGGG
AGGAGGTATTGA
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Synonyms
Publications