NO22G00350.1, NO22G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00350.1
Unique NameNO22G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr22:138922..140864 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:138922..140864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00350.1 vs.
Match: CBN76931.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 235.7 bits (600), Expect = 2.600e-58
Identity = 148/340 (43.53%), Postives = 204/340 (60.00%), Query Frame = 0 
Query:   82 EDIVLREEYLGGVMGLSQELSRHAIKKASALDVAAVARCRDLLTILNGKLLEFEFRNGGLRRKYDGVKWGLRRMEDLLYELSVVGV--------FPPSSLPPSVPAMETAEGAMEEDKND--PIVPLAALEGIRLRLSSFDEHREVVIKACRDIQKSSKNAIYSTHRSDYSKARSLLTSARAGMKQALRPSLLLHPSLRHTGSVESAMEEFAEAVLFLIWREEGRLAVREEVGEGGEEVKEGGMEVTPIEYVGGLVDLTGEVGRFAVARATAREVTAVEGCLETVMYVAGELVRSTLPGKVNKKMEGLRTNQKKLETLRYELALIQAGKGTVGGMEGAKE 412
            E+ V  +EYLG  M L+ ELSR+AI +AS LD +++  C  L   + G+L++F+ RNG LRRK+DGVK+ +R+++D+LYEL++VG                 S    E  E   E+ K +  P++     E IR+ ++ FDE RE VIK  RDIQK SK AIYS HR+D  KA   ++  R    + L P +   P LR  G+   +MEEFAEA L+ +W +E RLA R EVG    E           EY+GGL+DLTGE+ RFAVARAT R+   V+ CLETV+ +   +  + LPGK+ KK   L  + +KL+ + YELAL++AGKGTV G+ G  E
Sbjct:  195 EEEVADDEYLGAAMRLTSELSRYAITQASILDRSSILACASLCRGVFGELVQFDLRNGPLRRKFDGVKYDVRKVDDILYELALVGTGADEGDGNADEDGGGGSRKRKEREEEEEEQKKAEGGPVLDTEEFESIRVAMTYFDEKREAVIKRTRDIQKWSKMAIYSLHRADLKKAEKQISDCRTAA-EGLLPLIDETPRLR-MGAYSCSMEEFAEARLYELWLKEKRLATRAEVGLVNTE-----------EYLGGLLDLTGELNRFAVARATERDSVGVKECLETVLVIHEFVTLNALPGKLPKKKNELLNSLRKLQNMTYELALMKAGKGTVSGVSGLDE 521
The following BLAST results are available for this feature:
BLAST of NO22G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76931.12.600e-5843.53conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00350NO22G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00350.1NO22G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00350.1.cds1NO22G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00350.1.cds2NO22G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00350.1.cds3NO22G00350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00350.1.cds4NO22G00350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00350.1.cds5NO22G00350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00350.1.cds6NO22G00350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00350.1 ID=NO22G00350.1|Name=NO22G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ATGCCTTTCACTTCGGACCTCGTGCTGTCCATCCAGAAAGCGAACAATGG
CGACTTCGCCAGCATGCGCGAGAGCTTCGAAGAGAATGAAATTAAGCTCC
AGGCTCTTAATCCTCTAATGCGTAGTTTGCGGAATCAATTGTCGTATGCT
CTTCATGAGTTGCACGATGGGGCCGTGGAGGTTTCTGGTCCGCTCCTAGA
TGACGCCTTTGTCAAGGTGGACACAGTCCTCGAAATTGTCGGAGAGGACA
TCGTACTACGCGAAGAGTACCTGGGAGGTGTGATGGGTTTAAGCCAGGAG
CTATCTCGGCATGCGATTAAGAAAGCGTCGGCCTTGGATGTGGCGGCGGT
GGCAAGGTGCCGCGACCTTCTCACCATCCTGAATGGGAAACTTCTCGAAT
TTGAATTTCGCAATGGCGGCCTGCGTCGCAAATATGATGGGGTCAAGTGG
GGCCTTCGGCGTATGGAAGATCTCCTCTACGAGCTGTCGGTCGTCGGCGT
CTTCCCCCCTTCCTCCCTCCCGCCTTCGGTGCCAGCGATGGAAACGGCTG
AGGGTGCGATGGAAGAGGACAAGAATGACCCCATCGTCCCGTTGGCGGCG
CTCGAAGGCATTCGTCTCCGTCTCTCCTCCTTCGACGAACACCGAGAAGT
GGTCATCAAGGCCTGTCGTGACATCCAAAAGTCCAGCAAGAACGCCATCT
ACTCCACCCACCGCTCCGACTATTCCAAGGCTCGTTCCCTCCTCACTTCC
GCCCGGGCCGGCATGAAGCAAGCCCTCCGTCCCTCCCTCCTCCTCCACCC
ATCCCTTCGGCACACGGGCTCGGTGGAGAGTGCCATGGAAGAGTTTGCCG
AGGCCGTTTTGTTTTTGATCTGGAGAGAGGAAGGGCGCCTGGCCGTGCGG
GAGGAAGTAGGGGAGGGAGGTGAGGAGGTGAAGGAGGGAGGGATGGAAGT
GACCCCCATCGAGTACGTTGGGGGTTTGGTAGACCTGACGGGGGAGGTGG
GAAGGTTTGCGGTGGCACGGGCGACGGCGCGGGAGGTGACGGCGGTGGAA
GGATGCTTGGAGACAGTCATGTATGTGGCGGGAGAACTGGTGCGATCGAC
CCTGCCGGGCAAGGTGAACAAGAAGATGGAGGGGCTGCGGACGAATCAGA
AGAAGCTGGAGACGCTGCGGTATGAGCTAGCATTGATCCAGGCGGGGAAG
GGGACGGTAGGGGGAATGGAAGGGGCGAAAGAGAGGGGGGAGGGGATGAA
GGAAACGGAAGAGGAGTAA
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protein sequence of NO22G00350.1

>NO22G00350.1-protein ID=NO22G00350.1-protein|Name=NO22G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPFTSDLVLSIQKANNGDFASMRESFEENEIKLQALNPLMRSLRNQLSYA
LHELHDGAVEVSGPLLDDAFVKVDTVLEIVGEDIVLREEYLGGVMGLSQE
LSRHAIKKASALDVAAVARCRDLLTILNGKLLEFEFRNGGLRRKYDGVKW
GLRRMEDLLYELSVVGVFPPSSLPPSVPAMETAEGAMEEDKNDPIVPLAA
LEGIRLRLSSFDEHREVVIKACRDIQKSSKNAIYSTHRSDYSKARSLLTS
ARAGMKQALRPSLLLHPSLRHTGSVESAMEEFAEAVLFLIWREEGRLAVR
EEVGEGGEEVKEGGMEVTPIEYVGGLVDLTGEVGRFAVARATAREVTAVE
GCLETVMYVAGELVRSTLPGKVNKKMEGLRTNQKKLETLRYELALIQAGK
GTVGGMEGAKERGEGMKETEEE*
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mRNA from alignment at chr22:138922..140864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00350.1 ID=NO22G00350.1|Name=NO22G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at chr22:138922..140864+ (Nannochloropsis oceanica)
ATGCCTTTCACTTCGGACCTCGTGCTGTCCATCCAGAAAGCGAACAATGG
CGACTTCGCCAGCATGCGCGAGAGCTTCGAAGAGAATGAAATTAAGCTCC
AGGCTCTTAATCCTCTAATGCGTAGTTTGCGGAATCAATTGTCGTATGCT
CTTCATGAGTTGCACGATGGGGCCGTGGAGGTTTCTGGTCCGCTCCTAGA
TGACGCCTTTGTCAAGGTAAGACAGCGAAAAAGCAAATAAAATAGAGAGA
ACAACATAGCTATAAGTGGAGGAGGCATGCTGGGAATATCCTAAGCAAAA
ACAGTCAAGTCCTATAAGCATCTCCTCATCGCGTTCTTCCCTCCCTCCCT
CACCCATCAGGTGGACACAGTCCTCGAAATTGTCGGAGAGGACATCGTAC
TACGCGAAGGTTGGATCAGCGATATTCTGGATCTGATGGTTAAGACTCGG
GCGTTTCAATACTTCCTCTCGACAGGCCGGCTTCTCCCTCCCACCGATCT
TACCTTGACAGGAGGGAGGGGGGAGGAACGGAAGGAGGACGCGTACGGGA
TGAAGAGTACCTGGGAGGTGTGATGGGTTTAAGCCAGGAGCTATCTCGGC
ATGCGATTAAGAAAGCGTCGGCCTTGGATGTGGCGGCGGTGGCAAGGTTC
GGATGGAGAGAGGGAAGGAGGGGGTGGGTGGGTGGAAAGGTAGGAGGGCG
ATCGCCTTGTAAGCAGCCCCATATTTCTTGCATATACATAAATAACAAAT
ACAATATGTAATATGATTACAATAATTACACGCAGGTGCCGCGACCTTCT
CACCATCCTGAATGGGAAACTTCTCGAATTTGAATTTCGGTACGTCTTTC
CATCTGCCCTTCTTCTCTCCCTCTTACTTCCTTGCCGCCACCATTGATCC
CATCCGCACAACCCACTTCTCTCCCTCACTCCCTCCCTCCCTCTGCTCCA
GCAATGGCGGCCTGCGTCGCAAATATGATGGGGTCAAGTGGGGCCTTCGG
CGTATGGAAGATCTCCTCTACGAGCTGTCGGTCGTCGGCGTCTTCCCCCC
TTCCTCCCTCCCGCCTTCGGTGCCAGCGATGGAAACGGCTGAGGGTGCGA
TGGAAGAGGACAAGAATGACCCCATCGTCCCGTTGGCGGCGCTCGAAGGT
GTGGATGTGGGAACCTCGTGGAAGAAGCACAGACAGAGAGTTACCTCCTC
CTCTACTCCTCCTTTCTTTCTTCCTCTCTCACACTACCCTCCTACCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCTGCCCAGGCATTCGTCTCCGTCTCTC
CTCCTTCGACGAACACCGAGAAGTGGTCATCAAGGCCTGTCGTGACATCC
AAAAGTCCAGCAAGAACGCCATCTACTCCACCCACCGCTCCGACTATTCC
AAGGCTCGTTCCCTCCTCACTTCCGCCCGGGCCGGCATGAAGCAAGCCCT
CCGTCCCTCCCTCCTCCTCCACCCATCCCTTCGGCACACGGGCTCGGTGG
AGAGTGCCATGGAAGAGTTTGCCGAGGCCGTTTTGTTTTTGATCTGGAGA
GAGGAAGGGCGCCTGGCCGTGCGGGAGGAAGTAGGGGAGGGAGGTGAGGA
GGTGAAGGAGGGAGGGATGGAAGTGACCCCCATCGAGTACGTTGGGGGTT
TGGTAGACCTGACGGGGGAGGTGGGAAGGTTTGCGGTGGCACGGGCGACG
GCGCGGGAGGTGACGGCGGTGGAAGGATGCTTGGAGACAGTCATGTATGT
GGCGGGAGAACTGGTGCGATCGACCCTGCCGGGCAAGGTGAACAAGAAGA
TGGAGGGGCTGCGGACGAATCAGAAGAAGCTGGAGACGCTGCGGTATGAG
CTAGCATTGATCCAGGCGGGGAAGGGGACGGTAGGGGGAATGGAAGGGGC
GAAAGAGAGGGGGGAGGGGATGAAGGAAACGGAAGAGGAGTAA
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Coding sequence (CDS) from alignment at chr22:138922..140864+

>NO22G00350.1 ID=NO22G00350.1|Name=NO22G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr22:138922..140864+ (Nannochloropsis oceanica)
ATGCCTTTCACTTCGGACCTCGTGCTGTCCATCCAGAAAGCGAACAATGG
CGACTTCGCCAGCATGCGCGAGAGCTTCGAAGAGAATGAAATTAAGCTCC
AGGCTCTTAATCCTCTAATGCGTAGTTTGCGGAATCAATTGTCGTATGCT
CTTCATGAGTTGCACGATGGGGCCGTGGAGGTTTCTGGTCCGCTCCTAGA
TGACGCCTTTGTCAAGGTGGACACAGTCCTCGAAATTGTCGGAGAGGACA
TCGTACTACGCGAAGAGTACCTGGGAGGTGTGATGGGTTTAAGCCAGGAG
CTATCTCGGCATGCGATTAAGAAAGCGTCGGCCTTGGATGTGGCGGCGGT
GGCAAGGTGCCGCGACCTTCTCACCATCCTGAATGGGAAACTTCTCGAAT
TTGAATTTCGCAATGGCGGCCTGCGTCGCAAATATGATGGGGTCAAGTGG
GGCCTTCGGCGTATGGAAGATCTCCTCTACGAGCTGTCGGTCGTCGGCGT
CTTCCCCCCTTCCTCCCTCCCGCCTTCGGTGCCAGCGATGGAAACGGCTG
AGGGTGCGATGGAAGAGGACAAGAATGACCCCATCGTCCCGTTGGCGGCG
CTCGAAGGCATTCGTCTCCGTCTCTCCTCCTTCGACGAACACCGAGAAGT
GGTCATCAAGGCCTGTCGTGACATCCAAAAGTCCAGCAAGAACGCCATCT
ACTCCACCCACCGCTCCGACTATTCCAAGGCTCGTTCCCTCCTCACTTCC
GCCCGGGCCGGCATGAAGCAAGCCCTCCGTCCCTCCCTCCTCCTCCACCC
ATCCCTTCGGCACACGGGCTCGGTGGAGAGTGCCATGGAAGAGTTTGCCG
AGGCCGTTTTGTTTTTGATCTGGAGAGAGGAAGGGCGCCTGGCCGTGCGG
GAGGAAGTAGGGGAGGGAGGTGAGGAGGTGAAGGAGGGAGGGATGGAAGT
GACCCCCATCGAGTACGTTGGGGGTTTGGTAGACCTGACGGGGGAGGTGG
GAAGGTTTGCGGTGGCACGGGCGACGGCGCGGGAGGTGACGGCGGTGGAA
GGATGCTTGGAGACAGTCATGTATGTGGCGGGAGAACTGGTGCGATCGAC
CCTGCCGGGCAAGGTGAACAAGAAGATGGAGGGGCTGCGGACGAATCAGA
AGAAGCTGGAGACGCTGCGGTATGAGCTAGCATTGATCCAGGCGGGGAAG
GGGACGGTAGGGGGAATGGAAGGGGCGAAAGAGAGGGGGGAGGGGATGAA
GGAAACGGAAGAGGAGTAA
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Synonyms
Publications